Cephalochordates: A window into vertebrate origins

Current Topics in Developmental Biology - Tập 141 - Trang 119-147 - 2021
Linda Z. Holland1, Nicholas D. Holland1
1Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, United States

Tài liệu tham khảo

Adachi, 2012, Development of head and trunk mesoderm in the dogfish, Scyliorhinus torazame: I. Embryology and morphology of the head cavities and related structures, Evolution and Development, 14, 234, 10.1111/j.1525-142X.2012.00542.x Adachi, 2012, Development of the head and trunk mesoderm in the dogfish, Scyliorhinus torazame: II. Comparison of gene expression between the head mesoderm and somites with reference to the origin of the vertebrate head, Evolution and Development, 14, 257, 10.1111/j.1525-142X.2012.00543.x Albuixech-Crespo, 2017, Molecular regionalization of the developing amphioxus neural tube challenges major partitions of the vertebrate brain, PLoS Biology, 15, 10.1371/journal.pbio.2001573 Aldea, 2019, Genetic regulation of amphioxus somitogenesis informs the evolution of the vertebrate head mesoderm, Nature Ecology and Evolution, 3, 1233, 10.1038/s41559-019-0933-z Ariëns Kappers, 1960, Vol. 1, 135 Ataliotis, 2005, XTbx1 is a transcriptional activator involved in head and pharyngeal arch development in Xenopus laevis, Developmental Dynamics, 232, 979, 10.1002/dvdy.20276 Balfour, 1876, On the development of elasmobranch fishes. From stages B to G, Journal of Anatomy and Physiology, 10, 672 Balfour, 1877, The development of elasmobranch fishes, Journal of Anatomy and Physiology, 11, 406 Balfour, 1885, Vols. 1&2, 591 Bertrand, 2011, Amphioxus FGF signaling predicts the acquisition of vertebrate morphological traits, Proceedings of the National Academy of Sciences of the United States of America, 108, 9160, 10.1073/pnas.1014235108 Bone, 1959, The central nervous system in larval acraniates, Quarterly Journal of Microscopical Science, 100, 509 Bone, 1960, The central nervous system in amphioxus, Journal of Comparative Nerurology, 115, 27, 10.1002/cne.901150105 Bronner, 2015, On the crest of becoming vertebrate, Nature, 527, 311, 10.1038/nature15645 Bronner, 2012, Development and evolution of the neural crest: An overview, Developmental Biology, 366, 2, 10.1016/j.ydbio.2011.12.042 Castro, 2006, A Gbx homeobox gene in amphioxus: Insights into ancestry of the ANTP class and evolution of the midbrain/hindbrain boundary, Developmental Biology, 295, 40, 10.1016/j.ydbio.2006.03.003 Conway Morris, 2014, A primitive fish from the Cambrian of North America, Nature, 512, 419, 10.1038/nature13414 Costa, 1834, 90 De Robertis, 1990, Homeobox genes and the vertebrate body plan, Scientific American, 263, 46, 10.1038/scientificamerican0790-46 Delsuc, 2006, Tunicates and not cephalochordates are the closest living relatives of the vertebrates, Nature, 439, 965, 10.1038/nature04336 Delsuc, 2018, A phylogenomic framework and timescale for comparative studies of tunicates, BMC Biology, 16, 39, 10.1186/s12915-018-0499-2 Delsuc, 2008, Additional molecular support for the new chordate phylogeny, Genesis, 46, 592, 10.1002/dvg.20450 Dohrn, 1885, Studien zur Urgeschichte des Wirbelthierkorpers. VIII. Die Thyroidea bei Petromyzon, Amphioxus und Tunicaten, Vol. 6, 1 Gans, 1993, Evolutionary origin of the vertebrate skull, 1 Gans, 1983, Neural crest and the origin of vertebrates: A new head, Science, 220, 268, 10.1126/science.220.4594.268 Gilland, 1992, 306 Glardon, 1998, Isolation and developmental expression of the amphioxus Pax-6 gene (AmphiPax-6): Insights into eye and photoreceptor evolution, Development, 125, 2701, 10.1242/dev.125.14.2701 Gomes, 1985, In situ hybridization with biotinylated DNA probes: A rapid diagnostic test for adenovirus upper respiratory infections, Journal of Virological Methods, 12, 105, 10.1016/0166-0934(85)90012-6 Goodrich, 1902, On the structure of the excretory organs of amphioxus, Quarterly Journal of Microscopical Science, 45, 493 Goodrich, 1909, On the structure of the excretory organs of amphioxus. Parts 2–4, Quarterly Journal of Microscopical Science, 54, 185 Guner-Ataman, 2018, Failed progenitor specification underlies the cardiopharyngeal phenotypes in a zebrafish model of 22q11.2 deletion syndrome, Cell Reports, 24, 1342, 10.1016/j.celrep.2018.06.117 Hatschek, 1892, Die Metamerie des Amphioxus und des Ammocoetes, Verhandlungen der Anatomischen Gesellschaft, 6, 136 Hennig, 1973, Molecular hybridization of DNA and RNA in situ, 1, 10.1016/S0074-7696(08)60214-4 Herdman, 1904, Ascidians and amphioxus, 35 Holland, 2009, Chordate roots of the vertebrate nervous system: Expanding the molecular toolkit, Nature Reviews Neruroscience, 10, 736, 10.1038/nrn2703 Holland, 2013, Evolution of new characters after whole genome duplications: Insights from amphioxus, Seminars in Cell and Developmental Biology, 24, 101, 10.1016/j.semcdb.2012.12.007 Holland, 2017, The long and winding path to understanding kidney structure in amphioxus—A review, International Journal of Developmental Biology, 61, 683, 10.1387/ijdb.170196nh Holland, 2020, Hunting needles in a haystack: Migrating precursors of epidermal sensory neurons in amphioxus found with serial blockface scanning electron microscopy (SBSEM), Acta Zoologica Stockholm Holland, 2000, Developmental expression of AmphiWnt1, an amphioxus gene in the Wnt1/wingless subfamily, Development Genes and Evolution, 210, 522, 10.1007/s004270000089 Holland, 2001, Evolution of neural crest and placodes: Amphioxus as a model for the ancestral chordate, Journal of Anatomy, 199, 85, 10.1046/j.1469-7580.199.parts1-2.8.x Holland, 2008, The amphioxus and the evolution of head segmentation, Integrative and Comparative Biology, 48, 630, 10.1093/icb/icn060 Holland, 1993, Engrailed expression during development of a lamprey, Lampetra japonica—A possible clue to homologies between agnathan and gnathostome muscles of the mandibular arch, Development, Growth & Differentiation, 35, 153, 10.1111/j.1440-169X.1993.00153.x Holland, 1992, An amphioxus homeobox gene: Sequence conservation, spatial expression during development and insights into vertebrate evolution, Development, 116, 653, 10.1242/dev.116.3.653 Holland, 1997, Sequence and embryonic expression of the amphioxus engrailed gene (AmphiEn): The metameric pattern of transcription resembles that of its segment-polarity homolog in Drosophila, Development, 124, 1723, 10.1242/dev.124.9.1723 Holland, 1996, Sequence and developmental expression of AmphiDll, an amphioxus Distal-less gene transcribed in the ectoderm, epidermis and nervous system: Insights into evolution of craniate forebrain and neural crest, Development, 122, 2911, 10.1242/dev.122.9.2911 Holland, 2002, Epidermal receptor development and sensory pathways in vitally stained amphioxus (Branchiostoma floridae), Acta Zooligica Stockholm, 83, 309, 10.1046/j.1463-6395.2002.00120.x Huxley, 1875, Preliminary note upon the brain and skull of Amphioxus lanceolatus, Proceedings of the Royal Society of London, 23, 127, 10.1098/rspl.1874.0017 Igawa, 2017, Evolutionary history of the extant amphioxus lineage with shallow-branching diversification, Scientific Reports, 7, 1157, 10.1038/s41598-017-00786-5 Irie, 2018, The phylum vertebrata: A case for zoological recognition, Zoological Letters, 4, 32, 10.1186/s40851-018-0114-y Irimia, 2010, Conserved developmental expression of Fezf in chordates and Drosophila and the origin of the zona limitans intrathalamica (ZLI) brain organizer, EvoDevo, 1, 7, 10.1186/2041-9139-1-7 Jacobson, 1988, Somitomeres: Mesodermal segments of vertebrate embryos, Development, 104, 209, 10.1242/dev.104.Supplement.209 Janvier, 2011, Comparative anatomy: All vertebrates do have vertebrae, Current Biology, 21, R661, 10.1016/j.cub.2011.07.014 Kaltenbach, 2009, Developmental expression of the three iroquois genes of amphioxus (BfIrxA, BfIrxB, and BfIrxC) with special attention to the gastrula organizer and anteroposterior boundaries in the central nervous system, Gene Expression Patterns, 9, 329, 10.1016/j.gep.2009.02.003 Kaltenbach, 2009, The origin and migration of the earliest-developing sensory neurons in the peripheral nervous system of amphioxus, Evolution and Development, 11, 142, 10.1111/j.1525-142X.2009.00315.x Kingsbury, 1920, The developmental origin of the notochord, Science, 51, 190, 10.1126/science.51.1312.190.b Kluge, 2005, Anatomical and molecular reinvestigation of lamprey endostyle development provides new insight into thyroid gland evolution, Development Genes and Evolution, 215, 32, 10.1007/s00427-004-0450-0 Knecht, 2002, Induction of the neural crest: A multigene process, Nature Reviews. Genetics, 3, 453, 10.1038/nrg819 Kokubo, 2010, Mechanisms of heart development in the Japanese lamprey, Lethenteron japonicum, Evolution and Development, 12, 34, 10.1111/j.1525-142X.2009.00389.x Koltzoff, 1902, Entwickelungsgeschichte des Kofes von Petromyzon planeri, Bulletin de la Société Impériale des Naturalistes de Moscou N. S., 15, 259 Kon, 2007, Phylogenetic position of a whale-fall lancelet (Cephalochordata) inferred from whole mitochondrial genome sequences, BMC Evolutionary Biology, 7, 1, 10.1186/1471-2148-7-127 Koop, 2014, Roles of retinoic acid and Tbx1/10 in pharyngeal segmentation: Amphioxus and the ancestral chordate condition, EvoDevo, 5, 36, 10.1186/2041-9139-5-36 Kowalevsky, 1867, Entwickelungsgeschichte des Amphioxus lanceolatus, 11, 1 Kozmik, 1999, Characterization of an amphioxus paired box gene, AmphiPax2/5/8: Developmental expression patterns in optic support cells, nephridium, thyroid-like structures and pharyngeal gill slits, but not in the midbrain-hindbrain boundary region, Development, 126, 1295, 10.1242/dev.126.6.1295 Kuratani, 2016, What are head cavities?—A history of studies on vertebrate head segmentation, Zoological Science, 33, 213, 10.2108/zs150181 Lacalli, 1996, Frontal eye circuitry, rostral sensory pathways, and brain organization in amphioxus larvae: Evidence from 3D reconstructions, Philosophical Transactions of the Royal Society B, 351, 243, 10.1098/rstb.1996.0022 Lacalli, 2004, Sensory systems in amphioxus: A window on the ancestral chordate condition, Brain, Behavior and Evolution, 64, 148, 10.1159/000079744 Lacalli, 2018, Amphioxus, motion detection, and the evolutionary origin of the vertebrate retinotectal map, EvoDevo, 9, 6, 10.1186/s13227-018-0093-2 Lacalli, 1999, A reexamination of the epithelial sensory cells of amphioxus (Branchiostoma), Acta Zoologica Stockholm, 80, 125, 10.1046/j.1463-6395.1999.80220005.x Lara-Ramírez, 2017, The structure, splicing, synteny and expression of lamprey COE genes and the evolution of the COE gene family in chordates, Development Genes and Evolution, 227, 319, 10.1007/s00427-017-0591-6 Mahadevan, 2004, Developmental expression of the amphioxus Tbx1/10 gene illuminates the evolution of vertebrate branchial arches and sclerotome, Development Genes and Evolution, 214, 559, 10.1007/s00427-004-0433-1 Mallatt, 1996, Ventilation and the origin of jawed vertebrates: A new mouth, Zoological Journal of the Linnean Society, 117, 329, 10.1111/j.1096-3642.1996.tb01658.x Mallatt, 2013, Pikaia gracilens Walcott: Stem chordate, or already specialized in the Cambrian?, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320, 247, 10.1002/jez.b.22500 Mallatt, 1998, 28S and 18S rDNA sequences support the monophyly of lampreys and hagfishes, Molecular Biology and Evolution, 15, 1706, 10.1093/oxfordjournals.molbev.a025897 Martik, 2019, Evolution of the new head by gradual acquisition of neural crest regulatory circuits, Nature, 574, 675, 10.1038/s41586-019-1691-4 Mayr, 1963 McGinnis, 1984, A homologous protein-coding sequence in drosophila homeotic genes and its conservation in other metazoans, Cell, 37, 403, 10.1016/0092-8674(84)90370-2 Meier, 1979, Development of the chick embryo mesoblast: Formation of the embryonic axis and establishment of the metameric pattern, Developmental Biology, 73, 25, 10.1016/0012-1606(79)90135-0 Meulemans, 2004, Gene-regulatory interactions in neural crest evolution and development, Developmental Cell, 7, 291, 10.1016/j.devcel.2004.08.007 Neal, 1918, Neuromeres and metamers, Journal of Morphology, 31, 292, 10.1002/jmor.1050310203 Nicol, 1991, Cell counts and maps in the larval central nervous system of the ascidian Ciona intestinalis (L.), The Journal of Comparative Neurology, 309, 415, 10.1002/cne.903090402 Noden, 2005, Relations and interactions between cranial mesoderm and neural crest populations, Journal of Anatomy, 207, 575, 10.1111/j.1469-7580.2005.00473.x Nohara, 2005, Evolution of the mitochondrial genome in Cephalochordata as inferred from complete nucleotide sequences from two Epigonichthys species, Journal of Molecular Evolution, 60, 526, 10.1007/s00239-004-0238-x Olsson, 1955, Structure and development of Reissner's fibre in the caudal end of amphioxus and some lower vertebrates, Acta Zoologica Stockholm, 36, 167, 10.1111/j.1463-6395.1955.tb00379.x Olsson, 2005, Vertebrate head development: Segmentation, novelties, and homology, Theory in Biosciences, 124, 145, 10.1007/BF02814481 Olsson, 1994, The infundibular organ of the lancelet (Branchiostoma lanceolatum, Acrania): An immunocytochemical study, Cell and Tissue Research, 277, 107, 10.1007/BF00303086 Ota, 2018, Recent advances in hagfish developmental biology in a historical context: Implications for understanding the evolution of the vertebral elements, 615 Ota, 2011, Identification of vertebra-like elements and their possible differentiation from sclerotomes in the hagfish, Nature Communications, 2, 1, 10.1038/ncomms1355 Ota, 2007, Hagfish embryology with reference to the evolution of the neural crest, Nature, 446, 672, 10.1038/nature05633 Pallas, 1774 Parker, 2019, An atlas of anterior Hox gene expression in the embryonic sea lamprey head: Hox-code evolution in vertebrates, Developmental Biology, 453, 19, 10.1016/j.ydbio.2019.05.001 Pauling, 1963, Chemical paleogenetics. Molecular “restoration studies” of extinct forms of life, Acta Chemica Scandavica, 17, S9, 10.3891/acta.chem.scand.17s-0009 Piotrowski, 2003, The zebrafish van gogh mutation disrupts tbx1, which is involved in the DiGeorge deletion syndrome in humans, Development, 130, 5043, 10.1242/dev.00704 Prummel, 2019, A conserved regulatory program initiates lateral plate mesoderm emergence across chordates, Nature Communications, 10, 10.1038/s41467-019-11561-7 Pu, 1981, Anatomical and physiological characteristics of pineal photoreceptor cell in the larval lamprey, Petromyzon marinus, Journal of Neurophysiology, 46, 1018, 10.1152/jn.1981.46.5.1018 Rasmussen, 1991, The decline of recapitulationism in early twentieth-century biology: Disciplinary conflict and consensus of the battleground of theory, Journal of the History of Biology, 24, 51, 10.1007/BF00130474 Rasmussen, 2007, Amphioxus AmphiDelta: Evolution of Delta protein structure, segmentation, and neurogenesis, Genesis, 45, 113, 10.1002/dvg.20278 Romer, 1956, 486 Ruiz, 1991, Some considerations on the fine structure of rhabdomeric photoreceptors in the amphioxus, Branchiostoma lanceolatum (Cephalochordata), Journal für Hirnforschung, 32, 159 Ruppert, 1994, Evolutionary origin of the vertebrate nephron, American Zoologist, 34, 542, 10.1093/icb/34.4.542 Sauka-Spengler, 2002, Embryonic expression of Tbx1, a DiGeorge syndrome candidate gene, in the lamprey Lampetra fluviatilis, Gene Expression Patterns, 2, 99, 10.1016/S0925-4773(02)00301-5 Schlosser, 2017, From so simple a beginning—What amphioxus can teach us about placode evolution, International Journal of Developmental Biology, 61, 633, 10.1387/ijdb.170127gs Schubert, 2006, A retinoic acid-Hox hierarchy controls both anterior/posterior patterning and neuronal specification in the developing central nervous system of the cephalochordate amphioxus, Developmental Biology, 296, 190, 10.1016/j.ydbio.2006.04.457 Schubert, 2000, Characterization of amphioxus AmphiWnt8: Insights into the evolution of patterning of the embryonic dorsoventral axis, Evolution and Development, 2, 85, 10.1046/j.1525-142x.2000.00047.x Scott, 1984, Structural relationships among genes that control development: Sequence homology between the Antennapedia, Ultrabithorax, and fushi tarazu loci of Drosophila, Proceedings of the National Academy of Sciences of the United States of America, 81, 4115, 10.1073/pnas.81.13.4115 Sharman, 1999, An amphioxus Msx gene expressed predominantly in the dorsal neural tube, Development Genes and Evolution, 209, 260, 10.1007/s004270050251 Simakov, 2020, Deeply conserved synteny resolves early events in vertebrate evolution, Nature Ecology and Evolution, 4, 820, 10.1038/s41559-020-1156-z Smith, 2015, Changes in gene expression and cell shape characterise stages of epibranchial placode-derived neuron maturation in the chick, Journal of Anatomy, 227, 89, 10.1111/joa.12333 Sterba, 1983, Immunocytochemical investigations of the infundibular organ in amphioxus (Branchiostoma lanceolatum; Cephalochordata), Acta Zoologica Stockholm, 64, 149, 10.1111/j.1463-6395.1983.tb00793.x Stokes, 1995, Ciliary hovering in larval lancelets (= amphioxus), Biological Bulletin, 188, 231, 10.2307/1542300 Stokes, 1995, Embryos and larvae of a lancelet, Branchiostoma floridae, from hatching through metamorphosis—Growth in the laboratory and external morphology, Acta Zoolologica Stockholm, 76, 105, 10.1111/j.1463-6395.1995.tb00986.x Subirana, 2020, Asymmetron lucayanum: How many species are valid?, PLoS One, 15, 10.1371/journal.pone.0229119 Sugii, 2017, The Dlx5-FGF10 signaling cascade controls cranial neural crest and myoblast interaction during oropharyngeal patterning and development, Development, 144, 4037 Tautz, 1989, A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback, Chromosoma, 98, 81, 10.1007/BF00291041 Tiecke, 2007, Identification and developmental expression of two Tbx1/10-related genes in the agnathan Lethenteron japonicum, Development Genes and Evolution, 217, 691, 10.1007/s00427-007-0181-0 Venkatesh, 2014, Elephant shark genome provides unique insights into gnathostome evolution, Nature, 505, 174, 10.1038/nature12826 Vyas, 2019, Vertebrate cranial mesoderm: Developmental trajectory and evolutionary origin, Cellular and Molecular Life Sciences, 77, 1933, 10.1007/s00018-019-03373-1 Wada, 1994, Details of the evolutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA, Proceedings of the National Academy of Sciences of the United States of America, 91, 1801, 10.1073/pnas.91.5.1801 Wang, 2019, Gene profiling of head mesoderm in early zebrafish development: Insights into the evolution of cranial mesoderm, EvoDevo, 10, 14, 10.1186/s13227-019-0128-3 Willey, 1894, 316 Williams, 1996, Old head on young shoulders, Nature, 383, 490, 10.1038/383490a0 Yue, 2016, Conserved noncoding elements in the most distant genera of cephalochordates: The Goldilocks principle, Genome Biology and Evolution, 8, 2387, 10.1093/gbe/evw158 Yue, 2014, The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: A window into chordate evolution, Genome Biolology and Evolution, 6, 2681, 10.1093/gbe/evu212 Zieger, 2018, Retinoic acid signaling and neurogenic niche regulation in the developing peripheral nervous system of the cephalochordate amphioxus, Cellular and Molecular Life Sciences, 75, 2407, 10.1007/s00018-017-2734-3 Zuckerkandl, 1965, Molecules as documents of evolutionary history, Journal of Theoretical Biology, 8, 357, 10.1016/0022-5193(65)90083-4