Biochemical characterization of NfsA, the Escherichia coli major nitroreductase exhibiting a high amino acid sequence homology to Frp, a Vibrio harveyi flavin oxidoreductase

Journal of Bacteriology - Tập 178 Số 15 - Trang 4508-4514 - 1996
Shuhei Zenno1, Hideaki Koike1, Ajit Kumar1, R. Jayaraman1, Masaru Tanokura1, Kaoru Saigo1
1Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Bunkyo-ku, Japan

Tóm tắt

We identified the nfsA gene, encoding the major oxygen-insensitive nitroreductase in Escherichia coli, and determined its position on the E. coli map to be 19 min. We also purified its gene product, NfsA, to homogeneity. It was suggested that NfsA is a nonglobular protein with a molecular weight of 26,799 and is associated tightly with a flavin mononucleotide. Its amino acid sequence is highly similar to that of Frp, a flavin oxidoreductase from Vibrio harveyi (B. Lei, M. Liu, S. Huang, and S.-C. Tu, J. Bacteriol. 176:3552-3558, 1994), an observation supporting the notion that E. coli nitroreductase and luminescent-bacterium flavin reductase families are intimately related in evolution. Although no appreciable sequence similarity was detected between two E. coli nitroreductases, NfsA and NfsB, NfsA exhibited a low level of the flavin reductase activity and a broad electron acceptor specificity similar to those of NfsB. NfsA reduced nitrofurazone by a ping-pong Bi-Bi mechanism possibly to generate a two-electron transfer product.

Từ khóa


Tài liệu tham khảo

Bachmann , B. J. 1990 . Linkage map of Escherichia coli K-12, edition 8 . Microbiol. Rev. 54 : 130 - 197 .

Bradford , M. M. 1976 . A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding . Anal. Biochem. 72 : 248 - 254 .

Brew , K. , J. H. Shaper , K. W. Olsen , I. P. Trayer , and R. L. Hill . 1975 . Cross-linking of the components of lactose synthetase with dimethylpimelimidate . J. Biol. Chem. 250 : 1434 - 1444 .

Bryant , C. , and M. DeLuca . 1991 . Purification and characterization of an oxygen-insensitive NAD(P)H nitroreductase from Enterobacter cloacae . J. Biol. Chem. 266 : 4119 - 4125 .

Bryant , D. W. , D. R. McCalla , M. Leeksma , and P. Laneuville . 1981 . Type I nitroreductases of Escherichia coli . Can. J. Microbiol. 27 : 81 - 86 .

Chou , P. Y. , and G. D. Fasman . 1978 . Empirical predictions of protein conformation. Annu . Rev. Biochem. 47 : 25 - 76 .

Chung , C. T. , S. L. Niemela , and R. H. Miller . 1989 . One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution . Proc. Natl. Acad. Sci. USA 86 : 2172 - 2175 .

Gavin , J. J. , F. F. Ebetino , R. Freedman , and W. E. Waterbury . 1966 . The aerobic degradation of 1-(5-nitrofurrylideneamino)-2-imidazolidinone (NF246) by Escherichia coli . Arch. Biochem. Biophys. 113 : 399 - 404 .

Hastings , J. W. , C. J. Potrikus , S. C. Gupta , M. Kurfurst , and J. C. Makemson . 1985 . Biochemistry and physiology of bioluminescent bacteria . Adv. Microb. Physiol. 26 : 235 - 291 .

Inouye , S. , S. Zenno , Y. Sakaki , and F. I. Tsuji . 1991 . High-level expression and purification of apoaequorin . Protein Expr. Purif. 2 : 122 - 126 .

Jablonski , E. , and M. DeLuca . 1977 . Purification and properties of the NADH and NADPH specific FMN oxidoreductases from Beneckea harveyi . Biochemistry 16 : 2932 - 2936 .

Jablonski , E. , and M. DeLuca . 1978 . Studies of the control of Iuminescence in Beneckea harveyi: properties of the NADH and NADPH:FMN oxidoreductases . Biochemistry 17 : 672 - 678 .

Kang , W. - K. , T. Icho , S. Isono , M. Kitakawa , and K. Isono . 1989 . Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12 . Mol. Gen. Genet. 217 : 281 - 288 .

Kohara , Y. , K. Akiyama , and K. Isono . 1987 . The physical map of whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library . Cell 50 : 495 - 508 .

Kumar , A. N. , and R. Jayaraman . 1991 . Molecular cloning, characterization and expression of a nitrofuran reductase gene of Escherichia coli . J. Biosci. 16 : 145 - 159 .

Kyte , J. , and R. F. Doolittle . 1982 . A simple method for displaying the hydropathic character of a protein . J. Mol. Biol. 157 : 105 - 132 .

Laemmli , U. K. 1970 . Cleavage of structural proteins during the assembly of the head of bacteriophage T4 . Nature (London) 227 : 680 - 685 .

Lei , B. , M. Liu , S. Huang , and S. -C. Tu . 1994 . Vibrio harveyi NADPH-flavin oxidoreductase: cloning, sequencing and overexpression of the gene and purification and characterization of the cloned enzyme . J. Bacteriol. 176 : 3552 - 3558 .

McCalla , D. R. , C. Kaiser , and M. H. L. Green . 1978 . Genetics of nitrofurazone resistance in Escherichia coli . J. Bacteriol. 133 : 10 - 16 .

Messing , J. , and J. Vieira . 1982 . A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments . Gene 19 : 269 - 276 .

Ohnishi , K. , Y. Niimura , K. Yokoyama , M. Hidaka , H. Masaki , T. Uchimura , H. Suzuki , T. Uozumi , M. Kozaki , K. Komagata , and T. Nishino . 1994 . Purification and analysis of a flavoprotein functional as NADH oxidase from Amphibacillus xylanus overexpressed in Escherichia coli . J. Biol. Chem. 269 : 31418 - 31423 .

Peterson , F. J. , R. P. Mason , J. Hovsepian , and J. L. Holtzman . 1979 . Oxygen-sensitive and -insensitive nitroreduction by Escherichia coli and rat hepatic microsomes . J. Biol. Chem. 254 : 4009 - 4014 .

Rosenberg , M. , and D. Court . 1979 . Regulatory sequences involved in the promotion and termination of RNA transcription. Annu . Rev. Genet. 13 : 319 - 353 .

Sambrook J. E. F. Fritsch and T. Maniatis. 1989. Molecular cloning: a laboratory manual 2nd ed. Cold Spring Harbor Laboratory Press Cold Spring Harbor N.Y.

Schwartz R. M. and M. O. Dayhoff. 1978. Matrices for detecting distant relationships p. 353-358. In M. O. Dayhoff (ed.) Atlas of protein sequence and structure vol. 5 suppl. 3. National Biochemical Research Foundation Washington D.C.

Shine , J. , and L. Dalgarno . 1974 . The 3~-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites . Proc. Natl. Acad. Sci. USA 71 : 1342 - 1346 .

Uemori , T. , Y. Ishino , K. Fujita , K. Asada , and I. Kato . 1993 . Cloning of the DNA polymerase gene of Bacillus caldotenax and characterization of the gene product . J. Biochem. 113 : 401 - 410 .

Zenno , S. , H. Koike , M. Tanokura , and K. Saigo . 1996 . Conversion of NfsB, a minor Escherichia coli nitroreductase, to a flavin reductase similar in biochemical properties to FRase I, the major flavin reductase in Vibrio fischeri, by a single amino acid substitution . J. Bacteriol. 178 : 4731 - 4733 .

Zenno S. H. Koike M. Tanokura and K. Saigo. Gene cloning purification and characterization of NfsB a minor oxygen-insensitive nitroreductase from Escherichia coli similar in biochemical properties to FRase I the major flavin reductase in Vibrio fischeri. J. Biochem. in press.

Zenno , S. , and K. Saigo . 1994 . Identification of the genes encoding NAD(P)H-flavin oxidoreductases that are similar in sequence to Escherichia coli Fre in four species of Iuminous bacteria: Photorhabdus Iuminescens, Vibrio fischeri, Vibrio harveyi, and Vibrio orientalis . J. Bacteriol. 176 : 3544 - 3551 .

Zenno , S. , K. Saigo , H. Kanoh , and S. Inouye . 1994 . Identification of the gene encoding the major NAD(P)H-flavin oxidoreductase of the bioluminescent bacterium Vibrio fischeri ATCC 7744 . J. Bacteriol. 176 : 3536 - 3543 .