Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system

BMC Microbiology - Tập 16 Số 1 - 2016
Emilie Cardona1,2, Yannick Gueguen1,3, Kévin Magré1, Bénédicte Lorgeoux1, David Piquemal4, Fabien Pierrat4, Florian Noguier4, Denis Saulnier1
1Ecosystèmes Insulaires Océaniens (UMR 241)
2Lagons, Ecosystèmes et Aquaculture Durable en Nouvelle-Calédonie
3Interactions Hôtes-Pathogènes-Environnements
4ACOBIOM

Tóm tắt

Từ khóa


Tài liệu tham khảo

Avnimelech Y. Biofloc Technology - a practical guide book. Baton Rouge: The World Aquaculture Society; 2009.

Aguilera-Rivera D, Prieto-Davo A, Escalante K, Chavez C, Cuzon G, Gaxiola G. Probiotic effect of floc on Vibrios in the pacific white shrimp Litopenaeus vannamei. Aquaculture. 2014;424:215–9.

Ekasari J, Azhar MH, Surawidjaja EH, Nuryati S, De Schryver P, Bossier P. Immune response and disease resistance of shrimp fed biofloc grown on different carbon sources. Fish Shellfish Immunol. 2014;41(2):332–39.

Zhao P, Huang J, Wang XH, Song XL, Yang CH, Zhang XG, Wang GC. The application of bioflocs technology in high-intensive, zero exchange farming systems of Marsupenaeus japonicas. Aquaculture. 2012;354:97–106.

Xu WJ, Pan LQ. Enhancement of immune response and antioxidant status of Litopenaeus vannamei juvenile in biofloc-based culture tanks manipulating high C/N ratio of feed input. Aquaculture. 2013;412:117–24.

Luo P, Hu C, Xie Z, Zhang L, Ren C, Xu Y. PCR-DGGE analysis of bacterial community composition in brackish water Litopenaeus vannamei culture system. J Trop Oceanogr. 2006;25:49–53.

Kirchman DL. The ecology of Cytophaga–Flavobacteria in aquatic environments. FEMS Microbiol Ecol. 2002;39(2):91–100.

Kersters K, De Vos P, Gillis M, Swings J, Vandamme P, Stackebrandt E. Introduction to the Proteobacteria. The Prokaryotes. In: Proteobacteria: Alpha and Beta Subclasses, vol. 5. 2006. p. 3–37.

Woebken D, Fuchs BM, Kuypers MM, Amann R. Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl Environ Microbiol. 2007;73(14):4648–57.

Ramette A. Multivariate analyses in microbial ecology. FEMS Microbiol Ecol. 2007;62(2):142–60.

Bland JA, Brock TD. The marine bacterium Leucothrix mucor as an algal epiphyte. Mar Biol. 1973;23(4):283–92.

Gutiérrez-Salazar GJ, Molina-Garza ZJ, Hernández-Acosta M, García-Salas JA, Mercado-Hernández R, Galaviz-Silva L. Pathogens in Pacific white shrimp (Litopenaeus vannamei Boone, 1931) and their relationship with physicochemical parameters in three different culture systems in Tamaulipas, Mexico. Aquaculture. 2011;321(1):34–40.

Gao DW, Tao Y, An R. Digested sewage treatment using membrane-based process at different hydraulic retention times. Desalination. 2012;286:187–92.

Cytryn E, Van Rijn J, Schramm A, Gieseke A, de Beer D, Minz D. Identification of bacteria potentially responsible for oxic and anoxic sulfide oxidation in biofilters of a recirculating mariculture system. Appl Environ Microbiol. 2005;71(10):6134–41.

Hjelm M, Riaza A, Formoso F, Melchiorsen J, Gram L. Seasonal incidence of autochthonous antagonistic Roseobacter spp. and Vibrionaceae strains in a turbot larva (Scophthalmus maximus) rearing system. Appl Environ Microbiol. 2004;70(12):7288–94.

Dang H, Lovell CR. Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes. Appl Environ Microbiol. 2000;66(2):467–75.

Dang H, Lovell CR. Numerical dominance and phylotype diversity of marine Rhodobacter species during early colonization of submerged surfaces in coastal marine waters as determined by 16S ribosomal DNA sequence analysis and fluorescence in situ hybridization. Appl Environ Microbiol. 2002;68(2):496–504.

Lightner DV, Redman RM. Shrimp diseases and current diagnostic methods. Aquaculture. 1988;164(1):201–20.

Ruangpan L, Kitao T. Vibrio bacteria isolated from black tiger shrimp, Penaeus monodon Fabricius. J Fish Dis. 1991;14(3):383–8.

Karunasagar I, Pai R, Malathi GR, Karunasagar I. Mass mortality of Penaeus monodon larvae due to antibiotic-resistant Vibrio harveyi infection. Aquaculture. 1994;128(3):203–9.

Mohney LL, Lightner DV, Bell TA. An Epizootic of Vibriosis in Ecuadorian Pond‐Reared Penaeus vannamei Boone (Crustacea: Decapoda). J World Aquacult Soc. 1994;25(1):116–25.

Saulnier D, Haffner P, Goarant C, Levy P, Ansquer D. Experimental infection models for shrimp vibriosis studies: a review. Aquaculture. 2000;191:134–44.

Sung HH, Hsu SF, Chen CK, Ting YY, Chao WL. Relationships between disease outbreak in cultured tiger shrimp (Penaeus monodon) and the composition of Vibrio communities in pond water and shrimp hepatopancreas during cultivation. Aquaculture. 2001;192(2):101–10.

Bourne DG, Young N, Webster N, Payne M, Salmon M, Demel S, Hall M. Microbial community dynamics in a larval aquaculture system of the tropical rock lobster, Panulirus ornatus. Aquaculture. 2004;242(1):31–51.

Webster NS, Bourne DG, Hall M. Vibrionaceae infection in phyllosomas of the tropical rock lobster Panulirus ornatus as detected by fluorescence in situ hybridisation. Aquaculture. 2006;255(1):173–8.

Fouz B, Toranzo AE, Milan M, Amaro C. Evidence that water transmits the disease caused by the fish pathogen Photobacterium damselae subsp. damselae. J Appl Microbiol. 2000;88(3):531–5.

Crab R, Lambert A, Defoirdt T, Bossier P, Verstraete W. The application of bioflocs technology to protect brine shrimp (Artemia franciscana) from pathogenic Vibrio harveyi. J Appl Microbiol. 2010;109(5):1643–9.

Defoirdt T, Boon N, Sorgeloos P, Verstraete W, Bossier P. Quorum sensing and quorum quenching in Vibrio harveyi: lessons learned from in vivo work. ISME J. 2007;2(1):19–26.

Rappé MS, Connon SA, Vergin KL, Giovannoni SJ. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature. 2002;418(6898):630–3.

Fodelianakis S, Papageorgiou N, Pitta P, Kasapidis P, Karakassis I, Ladoukakis ED. The pattern of change in the abundances of specific bacterioplankton groups is consistent across different nutrient-enriched habitats in crete. Appl Environ Microbiol. 2014;80(13):3784–92.

Gatesoupe FJ. The use of probiotics in aquaculture. Aquaculture. 1999;180(1):147–65.

Liu H, Wang L, Liu M, Wang B, Jiang K, Ma S, Li Q. The intestinal microbial diversity in Chinese shrimp (Fenneropenaeus chinensis) as determined by PCR–DGGE and clone library analyses. Aquaculture. 2011;317(1):32–6.

Chaiyapechara S, Rungrassamee W, Suriyachay I, Kuncharin Y, Klanchui A, Karoonuthaisiri N, Jiravanichpaisal P. Bacterial community associated with the intestinal tract of P. monodon in commercial farms. Microb Ecol. 2012;63(4):938–53.

Rungrassamee W, Klanchui A, Chaiyapechara S, Maibunkaew S, Tangphatsornruang S, Jiravanichpaisal P, Karoonuthaisiri N. Bacterial population in intestines of the black tiger shrimp (Penaeus monodon) under different growth stages. PLoS One. 2013;8(4):e60802.

Zhang M, Sun Y, Chen K, Yu N, Zhou Z, Chen L, Du Z, Li E. Characterization of the intestinal microbiota in Pacific white shrimp, Litopenaeus vannamei, fed diets with different lipid sources. Aquaculture. 2014;434:449–55.

Johnson CN, Barnes S, Ogle J, Grimes DJ, Chang YJ, Peacock AD, Kline L. Microbial community analysis of water, foregut, and hindgut during growth of pacific White Shrimp, Litopenaeus vannamei, in closed‐system aquaculture. J World Aquacult Soc. 2008;39(2):251–8.

Harris JM. The presence, nature, and role of gut microflora in aquatic invertebrates: a synthesis. Microb Ecol. 1993;25(3):195–231.

Wang CZ, Lin GR, Yan T, Zheng ZP, Chen B, Sun FL. The cellular community in the intestine of the shrimp Penaeus penicillatus and its culture environments. Fish Sci. 2014;80(5):1001–7.

Holmes RM, Aminot A, Kerouel R, Hooker BA, Peterson BJ. A simple and precise method for measuring ammonium in marine and freshwater ecosystems. Can J Fish Aquat Sci. 1999;56(10):1801–8.

Bendschneider K, Robinson RJ. A new spectrophotometric method for the determination of nitrite in sea water. J Mar Res. 1952;11:87–96.

Holm-Hansen O, Lorenzen CJ, Holmes PE, Strickland JDH. Fluorometric determination of chlorophyll. Journal du Conseil Conseil International Pour l’Exploitation de la Mer. 1965;30:3–15.

Wilson K. In: Ausubel FM et al., editors. Preparation of genomic DNA from bacteria. Current protocols in molecular biology, chapter 2. New York: Wiley & Sons, Inc; 2001.

Caporaso JG, Lauber CL, Walters WA, Berg-lyons D, Lozupone CA, Turnbaugh PJ, Turnbaugh PJ, Fierer N, Knight R. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci. 2011;108(1):4516–22.