Association of DREB Genes and Microsatellite Markers Linked to NAX2 with Salt Tolerance in CIMMYT-derived Triticale, Wheat and Rye Genotypes

Abdel–Hamid AM. 2014. Physiological and molecular markers for salt tolerance in four barley cultivars. Eur. Sci. J. ESJ. 2014 Jan 31: 10(3) Agrawal PK, Agrawal P, Reddy MK, Sopory SK. 2006. Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep. 25: 1263–1247 Agarwal P, Agarwal PK, Nair S, Sopory SK, Reddy MK. 2007. Stress–inducible DREB2A transcription factor from Pennisetum glaucum is a phosphoprotein and its phosphorylation negatively regulates its DNA–binding activity. Mol. Genet. Genomics 277: 189–198 Arzani A. 2008. Improving salinity tolerance in crop plants: a biotechnological view. In Vitro Cell Dev. Biol. Plant. 44: 373–383 Badea C. 2012. Identification of dehydration tolerance in triticale (×Triticosecale Wittmack) seedlings. Ms.C thesis. Department of Agriculture, Food and Nutritional Science. Edmonton, Alberta–Batool N, Ilyas N, Shahzad A, Arshad M, Ul–Hassan F. 2016. Evaluation of Wheat genotypes on the basis of physiological indices under salt stress. Pure Appl. Biol. 5: 1183–1192 Bhutta WM, Amjad M. 2015. Molecular characterization of salinity tolerance in wheat (Triticum aestivum L.). Archives Agron. Soil Sci. 16: 1641–1648 Blum A. 2014. The abiotic stress response and adaptation of triticale–A Review. Cereal Res. Commun. 42: 359–375 Boyd CE. 1999. Water Quality: An Introduction. The Netherlands: Kluwer Academic Publishers Group. ISBN. 0–7923–7853–9 Bousba R, Baum M, Djekoune A, Labadidi S, Djighly A. 2012. Screening for drought tolerance using molecular markers and phenotypic diversity in durum wheat genotypes. World Appl. Sci. J. 16: 1219–1226 Budak H, Hussain B, Khan Z, Ozturk NZ, Ullah N. 2015. From genetics to functional genomics: improvement in drought signaling and tolerance in wheat. Front. Plant Sci. 6: 1–13 Byrt CS, Platten JD, Spielmeyer W, James RA, Lagudah ES, Dennis ES, Tester M, Munns R. 2007. HKT1:5–like cations transporters linked to Na+ exclusion loci in wheat, NAX2 and Knak1[OA]. Plant Physiol. 143: 1918–1928 Chen JQ, Meng XP, Zhang Y, Xia M, Wang XP. 2008. Overexpression of OsDREB genes lead to enhanced drought tolerance in rice. Biotechnol Lett. 30: 2191–2198 Chinnusamy V, Schumaker K, Zhu J. 2004. Molecular genetic perspectives on cross–talk and specificity in abiotic stress signalling in plants. J. Exp. Bot. 55: 225–236 Diaz de Leonَ JL, Escoppinichi R, Geraldo N, Castellanos T, Mujeeb–Kazi A, Rodِer MS. 2011. Quantitative trait loci associated with salinity tolerance in field grown bread wheat. Euphytica 181: 371–383 Egawa C, Kobayashi F, Ishibashi M, Nakamura T, Nakamura C, Takumi, S. 2006. Differential regulation of transcript accumulation and alternative splicing of a DREB2 homolog under abiotic stress conditions in common wheat. Genes Genet. Syst. 81: 77–91 Fernandez GCJ. 1992. Effective selection criteria for assessing plant stress tolerance In: Adaptation of Food Crops to Temperature and Water Stress, CG Kuo (ed.), AVRDC. Shanhua. Taiwan 257–270 Fioj Kordasht R, Heidari B, Dadkhodaie A. 2016. Investigation of triticale and wheat performance under dry land conditions on the basis of variations in agronomic and morphological traits. J. Adv. Biol. Biotechnol. 7: 1–9 Fischer RA, Maurer R. 1978. Drought resistance in spring wheat cultivars. Part 1: grain yield response. Aust. J. Agric. Res. 29: 897–912 Frankenberger WT, Tabatabai MA, Adriano DC, Doner HE. 1996. Bromine, chlorine, and fluorine. 833–868 Fujita Y, Fukuouka H, Yano H. 2009. Identification of wheat cultivars using EST–SSR markers. Breed. Sci. 59: 159–167 Gao F, Chen JM, Xiong AS, Peng RH, Liu JG, Cai B, Yao QH. 2009. Isolation and characterization of a novel AP2/EREBP–type transcription factor OsAP211 in Oryza sativa. Biol. Planta. 53: 643–649 Genc Y, Oldach K, Verbyla AP, Lott G, Hassan M., Tester M, Wallwork H, McDonald G.K. 2010. Sodium exclusion QTL associated with improved seedling growth in bread wheat under salinity stress. Theor. Appl. Genet. 121: 877–894 Giunta F, Motzo R. 2004. Sowing rate and cultivar affect total biomass and grain yield of spring triticale (×Triticosecale Wittmack) grain in a Mediterranean–type environment. Field Crops Res. 87: 193–197 Gorham J, Wyn Jones RG, Bristol A. 1990. Partial characterization of the trait for enhanced K+–Na+ discrimination in the D genome of wheat. Planta. 180: 590–597 Gutha LR, Reddy AR. 2008. Rice DREB 1B promoter shows distinct stress–specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance. Plant Mol. Biol. 68: 533–555 Hasan A, Hafiz HR, Siddiqui N, Khatun M, Islam R, Al–Mamun A. 2015. Evaluation of wheat genotypes for salt tolerance based on some physiological traits. J. Crop Sci. Plant Breed. 18: 333–340 Helmke PA, Sparks DL. 1996. Lithium, sodium, potassium, rubidium, and cesium. p. 551–574. In D. L. Sparks et al. (ed.) Methods of Soil Analysis. Part III. 3rd Ed. Am. Soc. Agron., Madison, WI Huang Sh, Spielmeyer W, Lagudah S, James RA, Platten JD, Dennis ES, Munns R. 2006. A sodium transporter (HKT7) is a candidate for NAX1, a gene for salt tolerance in durum wheat. Plant Physiol. 142: 1718–1727 Hussain SS, Kayani MA, Amjad M. 2011. Transcription factors as tools to engineer enhanced drought tolerance in plants. Americ. Ins. Chem. Engin. 27: 297–306 Imran QM, Kamran M, Ur Rehman S, Ghafoor A, Falak N, Kim K, Lee I, Yun BW, Jami M. 2016. GA Mediated OsZAT–12 Expression Improves Salt Resistance of Rice. Int. J. Agric. Biol. 18: 1814–9596 James RA, Rivelli AR, Munns R, von Caemmerer S. 2002. Factors affecting CO2 assimilation, leaf injury and growth in salt–stressed durum wheat. Func. Plant Biol. 29: 1393–1403 James RA, Davenport RJ, Munns R. 2006. Physiological characterization of two genes for Na+ exclusion in durum wheat: NAX1 and NAX2. Plant Physiol. 142: 1537–1547 Johnson RA, Wichern DW. 1982. Applied Multivariate Statistical Analysis. Prentice Hall. New Jersey 07458. 794 Kobayashi F, Ishibashi M, Takumi S. 2008. Transcriptional activation of COR/LEA genes and increase in abiotic stress tolerance through expression of a wheat DREB2 homolog in transgenic tobacco. Transgenic Res. 17: 755–767 Koebner RMD, Martin PK. 1996. High levels of salt tolerance revealed in triticale. Triticale: Today Tomorrow. Kluwer Academic Publishers. 429–436 Kuleung C, Baenziger PS, Dweikat I. 2004. Transferability of SSR markers among wheat, rye, and triticale. Theor. Appl. Genet. 108: 1147–1150 Larter EN. 2009. Triticale. The Canadian Encyclopedia. Lata C, Prasad M. 2011. Role of DREBs in regulation of abiotic stress responses in plants. J. Exp. Botany 62: 4731–4748 Luo MC, Dubcovsky J, Goyal S, Dvorak J. 1996. Engineering of interstitial foreign chromosome segments containing the K+/Na+ selectivity gene Knal by sequential homoeologous recombination in durum wheat. Theor. Appl. Genet. 92: 1180–1184 Medina J, Catala R, Salinas J. 2011. The CBFs: three Arabidopsis transcription factors to cold acclimate. Plant Sci. 180: 3–11 Mondini L, Nachit MM, Porceddu E, Pagnotta M. 2011. HRM technology for the identification and characterization of INDEL and SNP mutations in genes involved in drought and salt tolerance of durum wheat. Plant Genet. Res.: Charact. Utiliz. 9: 166–169 Mondini L, Nachit MM, Pagnotta M. 2014. Allelic variants in durum wheat (Triticum turgidum L. var. durum) DREB genes conferring tolerance to abiotic stresses. Mol. Genet. Genomics 290(2): 531–44. doi: 10.1007/s00438–014–0933–2 Nakashima K, Ito Y, Yamaguchi–Shinozaki K. 2009. Transcriptional regulatory networks in response to abiotic stresses in arabidopsis and grasses. Plant Physiol. 149: 88–95 Nayak SN, Balaji J, Upadhyaya HD, Hash CT, Kishor PBK, Chattopadhyay D, Rodriquez LM., Blair MW, Baum M, McNally K, This D, Hoisington DA, Varshney RK. 2009. Isolation and sequence analysis of DREB2A homologues in three cereal and two legume species. Plant Sci. 177: 460–467 Nelson JC, Sorrells ME, Van–Deynze A.E, Lu YH, Atkinson M, Bernard M, Leroy P, Faris JD, Anderson JA. 1995. Molecular mapping of wheat: major genes and rearrangements in homoeologous groups 4, 5, and 7. Genetics 141: 721–731 Pandey B, Sharma P, Saini M, Pandey DM, Sharma I. 2014. Isolation and characterization of dehydration–responsive element–binding factor 2 (DREB2) from Indian wheat (Triticum aestivum L.) cultivars. Aust. J. Crop Sci. 8: 44–54 Richards LA. (1954). Diagnosis and improvement of saline and alkaline soils. U. S. Salinity Laboratory Staff. USDA. Hand book No. 60. Washington, D C. 160 pp Rohlf FJ. 2001. Comparative methods for the analysis of continuous variables: geometric interpretations. Evolution 55: 2143–2160 Röder MS, Plaschke J, Konig SU, Borner A, Sorrells ME, Tanksley SD, Ganal MW 1995. Abundance, variability and chromosomal location of microsatellites in wheat. Mol. Gen. Genet. 246: 327–333 Rosielle AA, Hamblin I. 1981. Theoretical aspects of selection for yield in stress and non–stress environments. Crop Sci. 21: 43–46 Saghai–Maroof MA, Soliman KM, Jorgensen RA, Allard R W. 1984. Ribosomal DNA spacer–length polymorphism in barely: mendelian inheritance, chromosomal location, and population dynamics. Proceedings of the National Academy of Sciences of the United States of American. 81: 8014–8018 Shalaby EE, Epstein E, Qualset CO. 1993. Variation in salt tolerance among some wheat and triticale genotypes. J. Agron. Crop Sci. 171: 298–304 Shi Y, Gao L, Wu Z, Zhang X, Wang M, Zhang C, Zhang F, Zhou Y, Li Z. 2017. Genome–wide association study of salt tolerance at the seed germination stage in rice. BMC Plant Biol. 17: 92 Swindell WR. 2006. The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana. Genetics. 174: 1811–1824 Tahmasebi S, Heidari B, Pakniyat H, Jalal Kamali M. 2014. Independent and combined effects of heat and drought stress in the SeriM82/Babax bread wheat population. Plant Breed. 133: 702–711 Tahmasebi S, Heidari B, Pakniyat H, Dadkhodaie A. 2015. Consequences of 1BL/1RS translocation on agronomic and physiological traits in wheat. Cereal Res. Commun. 43: 554–566 Tilley M. 2004. PCR amplification of wheat sequences from DNA extracted during milling and baking. Cereal Chem. 81: 44–47 Tondelli A, Francia E, Barabaschi D, Aprile A, Skinner JS, Stockinger EJ, Stanca AM, Pecchioni N. 2006. Mapping regulatory genes as candidates for cold and drought stress tolerance in barley. Theor. Appl. Genet. 112: 445–454 Wang Z, Gerstein M, Snyder M. 2009. RNA–Seq: a revolutionary tool for transcriptomics. Nature Rev. Genet. 10: 57–63 Watanabe FS, Olsen SR. 1965. Test of an ascorbic acid method for determining phosphorus in water and NaHCO3 extracts from soil. Soil Sci. Soc. Am. Proc. 29: 677–678 Wei B, Jing R, Wang C, Chen, J, Mao X, Chang X, Jia J. 2009. DREB1 genes in wheat (Triticum aestivum L.): Development of functional markers and gene mapping based on SNPs. Mol. Breed. 23: 13–22 Xu ZS, Ni ZY, Liu L, Nie LN, Li LC, Chen M, Ma YZ. 2008b. Characterization of the TaAIDFa gene encoding a CRT/DRE–binding factor responsive to drought, high–salt, and cold stress in wheat. Mol. Genet. Genomics 280: 497–508 Yamaguchi–Shinozaki K, Shinozaki K. 1993. Characterization of the expression of a desiccation–responsive rd29 gene of Arabidopsis thaliana and analysis of its promoter in transgenic plants. Mol. General Genet. 236: 331–340