Application of bacteriophage in rapid detection of Escherichia coli in foods

WHO, 2015 Carstens, 2019, Multistate outbreaks of foodborne illness in the United States associated with fresh produce from 2010 to 2017, Front Microbiol, 10, 2667, 10.3389/fmicb.2019.02667 Hoffmann, 2012, Annual cost of illness and quality-adjusted life year losses in the United States due to 14 foodborne pathogens, J Food Protect, 75, 1292, 10.4315/0362-028X.JFP-11-417 Dewey-Mattia, 2018, Surveillance for foodborne disease outbreaks - United States, 2009-2015, MMWR Surveill Summ, 67, 1, 10.15585/mmwr.ss6710a1 Gonzalez-Escalona, 2019, Shiga toxin-producing Escherichia coli, 289 Bain, 2014, Fecal contamination of drinking-water in low- and middle-income countries: a systematic review and meta-analysis, PLoS Med, 11, 10.1371/journal.pmed.1001644 Salmond, 2015, A century of the phage: past, present and future, Nat Rev Microbiol, 13, 777, 10.1038/nrmicro3564 Stone, 2019, Understanding and exploiting phage-host interactions, Viruses, 11, 567, 10.3390/v11060567 Wei, 2021, Advances in typing and identification of foodborne pathogens, Curr Opin Food Sci, 37, 52, 10.1016/j.cofs.2020.09.002 Principi, 2019, Advantages and limitations of bacteriophages for the treatment of bacterial infections, Front Pharmacol, 10, 513, 10.3389/fphar.2019.00513 Bai, 2016, Biocontrol and rapid detection of food-borne pathogens using bacteriophages and endolysins, Front Microbiol, 7, 10.3389/fmicb.2016.00474 Law, 2020, Phage therapy: primer and role in the treatment of MDROs, Curr Infect Dis Rep, 22, 10.1007/s11908-020-00742-x Endersen, 2020, The use of bacteriophages for food safety, Curr Opin Food Sci, 36, 1, 10.1016/j.cofs.2020.10.006 Foddai, 2020, Methods for detection of viable foodborne pathogens: current state-of-art and future prospects, Appl Microbiol Biotechnol, 104, 4281, 10.1007/s00253-020-10542-x Bhunia, 2014, One day to one hour: how quickly can foodborne pathogens be detected?, Fut Microbiol, 9, 935, 10.2217/fmb.14.61 Zhao, 2014, Advances in rapid detection methods for foodborne pathogens, J Microbiol Biotechnol, 24, 297, 10.4014/jmb.1310.10013 Richter, 2018, Recent advances in bacteriophage-based methods for bacteria detection, Drug Discov Today, 23, 448, 10.1016/j.drudis.2017.11.007 Sheng, 2019, A transcription aptasensor: amplified, label-free and culture-independent detection of foodborne pathogens via light-up RNA aptamers, Chem Commun, 55, 10096, 10.1039/C9CC05036A Ding, 2017, A multiplex RT-PCR assay for S. aureus, L. monocytogenes, and Salmonella spp. detection in raw milk with pre-enrichment, Front Microbiol, 8, 10.3389/fmicb.2017.00989 Zhao, 2013, Rapid detection of viable Escherichia coli O157 by coupling propidium monoazide with loop-mediated isothermal amplification, J Microbiol Biotechnol, 23, 1708, 10.4014/jmb.1306.06003 Schmelcher, 2014, Application of bacteriophages for detection of foodborne pathogens, Bacteriophage, 4, 10.4161/bact.28137 Paczesny, 2020, Recent progress in the detection of bacteria using bacteriophages: a review, Viruses, 12, 845, 10.3390/v12080845 Yang, 2020, Rapid detection of Escherichia coli using bacteriophage-induced lysis and image analysis, PLoS One, 15 Tilton, 2019, Nanophotonic device in combination with bacteriophages for enhancing detection sensitivity of Escherichia coli in simulated wash water, Anal Lett, 52, 2203, 10.1080/00032719.2019.1604726 He, 2017, Highly specific bacteriophage-affinity strategy for rapid separation and sensitive detection of viable Pseudomonas aeruginosa, Anal Chem, 89, 1916, 10.1021/acs.analchem.6b04389 Zhang, 2019, Catechol and zwitterion-bifunctionalized poly(ethylene glycol) based ultrasensitive antifouling electrochemical aptasensor for the quantification of adenosine triphosphate in biological media, Sens Actuators B: Chem, 288, 469, 10.1016/j.snb.2019.03.027 Wei, 2019, Bacteriophages as potential tools for detection and control of Salmonella spp. in food systems, Microorganisms, 7, 570, 10.3390/microorganisms7110570 Oliveira, 2012, Bacteriophage amplification assay for detection of Listeria spp. using virucidal laser treatment, Braz J Microbiol, 43, 1128, 10.1590/S1517-83822012000300040 Zhang, 2016, The use of a novel nanoluc-based reporter phage for the detection of Escherichia coli O157:H7, Sci Rep, 6 Martelet, 2015, Phage amplification and immunomagnetic separation combined with targeted mass spectrometry for sensitive detection of viable bacteria in complex food matrices, Anal Chem, 87, 5553, 10.1021/ac504508a Wang, 2016, Rapid screening of waterborne pathogens using phage-mediated separation coupled with real-time PCR detection, Anal Bioanal Chem, 408, 4169, 10.1007/s00216-016-9511-2 Oda, 2004, Rapid detection of Escherichia coli O157:H7 by using green fluorescent protein-labeled PP01 bacteriophage, Appl Environ Microb, 70, 527, 10.1128/AEM.70.1.527-534.2004 Zhang, 2017, Rapid and selective detection of E. coli O157:H7 combining phagomagnetic separation with enzymatic colorimetry, Food Chem, 234, 332, 10.1016/j.foodchem.2017.05.013 Janczuk, 2017, Bacteriophage-based bioconjugates as a flow cytometry probe for fast bacteria detection, Bioconjug Chem, 28, 419, 10.1021/acs.bioconjchem.6b00596 Srivastava, 2015, Highly sensitive and specific detection of E. coli by a SERS nanobiosensor chip utilizing metallic nanosculptured thin films, Analyst, 140, 3201, 10.1039/C5AN00209E Sedki, 2020, Non-lytic M13 phage-based highly sensitive impedimetric cytosensor for detection of coliforms, Biosens Bioelectron, 148, 10.1016/j.bios.2019.111794 Anany, 2011, Biocontrol of Listeria monocytogenes and Escherichia coli O157:H7 in meat by using phages immobilized on modified cellulose membranes, Appl Environ Microb, 77, 6379, 10.1128/AEM.05493-11 Richter, 2016, Ordering of bacteriophages in the electric field: application for bacteria detection, Sens Actuators B: Chem, 224, 233, 10.1016/j.snb.2015.09.042 Piuri, 2013, Generation of affinity-tagged fluoromycobacteriophages by mixed assembly of phage capsids, Appl Environ Microb, 79, 5608, 10.1128/AEM.01016-13 Tolba, 2010, Oriented immobilization of bacteriophages for biosensor applications, Appl Environ Microb, 76, 528, 10.1128/AEM.02294-09 Zhou, 2017, Charge-directed immobilization of bacteriophage on nanostructured electrode for whole-cell electrochemical biosensors, Anal Chem, 89, 5734, 10.1021/acs.analchem.6b03751 Xu, 2020, The synergy of chemical immobilization and electrical orientation of T4 bacteriophage on a micro electrochemical sensor for low-level viable bacteria detection via Differential Pulse Voltammetry, Biosens Bioelectron, 151, 10.1016/j.bios.2019.111914 Bhardwaj, 2016, Bacteriophage immobilized graphene electrodes for impedimetric sensing of bacteria (Staphylococcus arlettae), Anal Biochem, 505, 18, 10.1016/j.ab.2016.04.008 Tripathi, 2012, Long period grating based biosensor for the detection of Escherichia coli bacteria, Biosens Bioelectron, 35, 308, 10.1016/j.bios.2012.03.006 Hagens, 2010, Bacteriophage for biocontrol of foodborne pathogens: calculations and considerations, Curr Pharm Biotechnol, 11, 58, 10.2174/138920110790725429 England, 2016, NanoLuc: a small luciferase is brightening up the field of bioluminescence, Bioconjug Chem, 27, 1175, 10.1021/acs.bioconjchem.6b00112 Su, 2020, Novel NanoLuc substrates enable bright two-population bioluminescence imaging in animals, Nat Methods, 17, 852, 10.1038/s41592-020-0889-6 Hinkley, 2020, A syringe-based biosensor to rapidly detect low levels of Escherichia coli (ECOR13) in drinking water using engineered bacteriophages, Sensors (Basel), 20, 10.3390/s20071953 Zurier, 2020, Engineering biorthogonal phage-based nanobots for ultrasensitive, in situ bacteria detection, ACS Appl Bio Mate, 3, 5824, 10.1021/acsabm.0c00546 Hall, 2012, Engineered luciferase reporter from a deep sea shrimp utilizing a novel imidazopyrazinone substrate, ACS Chem Biol, 7, 1848, 10.1021/cb3002478 Kim, 2017, Sensitive detection of viable Escherichia coli O157:H7 from foods using a luciferase-reporter phage phiV10lux, Int J Food Microbiol, 254, 11, 10.1016/j.ijfoodmicro.2017.05.002 Wisuthiphaet, 2019, Rapid detection of Escherichia coli in beverages using genetically engineered bacteriophage T7, AMB Express, 9, 55, 10.1186/s13568-019-0776-7 Karoui, 2011, Fluorescence spectroscopy measurement for quality assessment of food systems—a review, Food Bioprocess Technol, 4, 364, 10.1007/s11947-010-0370-0 Hoang, 2015, Rapid and simple colorimetric detection of Escherichia coli O157:H7 in apple juice using a novel recombinant bacteriophage-based Method, Biocontrol Sci, 20, 99, 10.4265/bio.20.99 Burnham, 2014, Towards rapid on-site phage-mediated detection of generic Escherichia coli in water using luminescent and visual readout, Anal Bioanal Chem, 406, 5685, 10.1007/s00216-014-7985-3 Howard-Varona, 2017, Lysogeny in nature: mechanisms, impact and ecology of temperate phages, ISME J, 11, 1511, 10.1038/ismej.2017.16 FDA, 2017, Chapter 4: enumeration of Escherichia coli and the coliform bacteria Makarova, 2011, Evolution and classification of the CRISPR–Cas systems, Nat Rev Microbiol, 9, 467, 10.1038/nrmicro2577 Touchon, 2011, CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection, J Bacteriol, 193, 2460, 10.1128/JB.01307-10 Kropinski, 2012, Endemic bacteriophages: a cautionary tale for evaluation of bacteriophage therapy and other interventions for infection control in animals, Virol J, 9, 207, 10.1186/1743-422X-9-207 Perry, 2009, Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen, FEMS Microbiol Lett, 292, 182, 10.1111/j.1574-6968.2009.01511.x Koskella, 2013, Understanding bacteriophage specificity in natural microbial communities, Viruses, 5, 806, 10.3390/v5030806 Lennon, 2020, Bacteriophages specific to Shiga toxin-producing Escherichia coli exist in goat feces and associated environments on an organic produce farm in Northern California, USA, PLoS One, 15, 10.1371/journal.pone.0234438 Oats, 2018 Farrokhzad, 2014 Vinay, 2015, Phage-based fluorescent biosensor prototypes to specifically detect enteric bacteria such as E. coli and Salmonella enterica typhimurium, PLoS One, 10, 10.1371/journal.pone.0131466 Wang, 2017, Electrochemical detection of Escherichia coli from aqueous samples using engineered phages, Anal Chem, 89, 1650, 10.1021/acs.analchem.6b03752