Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
Tóm tắt
We designed a panel of four 16S rRNA-targeted oligonucleotide probes specific for bacteria of the phylum cytophaga-flavobacter-bacteroides (CFB). Probes CF319a and CF319b are targeted to members of the flavobacteria-cytophaga group and the genus
Từ khóa
Tài liệu tham khảo
Amann, 1990a, Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations, Appl Environ Microbiol, 56, 1919, 10.1128/AEM.56.6.1919-1925.1990
Amann, 1990b, Fluorescent oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology, J Bacteriol, 172, 762, 10.1128/JB.172.2.762-770.1990
Amann, 1991, Identification in situ and phylogeny of uncultured bacterial endosymbionts, Nature, 351, 161, 10.1038/351161a0
Amann, 1992, Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms, Appl Environ Microbiol, 58, 614, 10.1128/AEM.58.2.614-623.1992
Bauwens, 1981, Improvements in the taxonomy of Flavobacterium by DNA-RNA hybridization, The Flavobacterium-Cytophaga Group, 27
Bergey, 1923, Genus II. Flavobacterium gen. nov, Bergey’s Manual of Determinative Bacteriology, 97
Brosius, 1981, Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli, J Mol Biol, 148, 107, 10.1016/0022-2836(81)90508-8
Burggraf, 1994, Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes, Appl Environ Microbiol, 60, 3112, 10.1128/AEM.60.9.3112-3119.1994
Callies, 1980, Deoxyribonucleic acid relatedness of some menaquinone producing Flavobacterium and Cytophaga strains, Antonie Eeeuwenhoek, 46, 41, 10.1007/BF00422227
Collins, 1985, Reclassification of Bacteroides microfusus (Kaneuchi and Mitsuoka) in a new genus Rikenella, as Rikenella microfusus comb nov, Syst Appl Microbio, 16, 79, 10.1016/S0723-2020(85)80015-1
Ehrmann, 1992, Species specific oligonucleotide probe for the identification of Streptococcus thermo-philus, Syst Appl Microbiol, 15, 453, 10.1016/S0723-2020(11)80221-3
Fox, 1977, Comparative cataloging of 16S ribosomal ribonucleic acid molecular approach to procaryotic systematics, Int J Syst Bacteriol, 27, 44, 10.1099/00207713-27-1-44
Gherna, 1992, A partial phylogenetic analysis of the ‘Flavobacter-Bacteroides ’ phylum: basis for taxonomic restructuring, Syst Appl Microbiol, 15, 513, 10.1016/S0723-2020(11)80110-4
Giovannoni, 1988, Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells, J Bacteriol, 170, 720, 10.1128/JB.170.2.720-726.1988
Güde, 1980, Occurrence of Cytophagas in sewage plants, Appl Environ Microbiol, 39, 756, 10.1128/AEM.39.4.756-763.1980
Holdeman, 1976, Human fecal flora: variation in bacterial composition within individuals and a possible effect on emotional stress, Appl Environ Microbiol, 31, 359, 10.1128/AEM.31.3.359-375.1976
Holmes, 1984, Genus Flavobacterium, Bergey’s Manual of Systematic Bacteriology, 353
Kuritza, 1985, Use of a species-specific DNA hybridization probe for enumerating Bacteroides vulgatus in human feces, Appl Environ Microbiol, 50, 958, 10.1128/AEM.50.4.958-964.1985
Kuritza, 1986, Enumeration of polysaccharide-degrading Bacteroides species in human feces by using species-specific DNA probes, Appl Environ Microbiol, 51, 385, 10.1128/AEM.51.2.385-390.1986
Ludwig, 1994, Bacterial phylogeny based on 16S and 23S rRNA sequence analysis, FEMS Microbiol Rep, 15, 155, 10.1111/j.1574-6976.1994.tb00132.x
Mannheim, 1981, Taxonomically useful test procedures pertaining to bacterial lipoquinones and associated functions, with special reference to Flavobacterium and Cytophaga, The Flavobacterium-Cytophaga Group, 115
Manz, 1992, Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions, Syst Appl Microbiol, 15, 593, 10.1016/S0723-2020(11)80121-9
Manz, 1993, In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes, Appl Environ Microbiol, 59, 2293, 10.1128/AEM.59.7.2293-2298.1993
Manz, 1994, In situ characterization of the microbial consortia active in two wastewater treatment plants, Water Res, 28, 1715, 10.1016/0043-1354(94)90243-7
Moore, 1974, Human fecal flora: the normal flora of 20 Japanese-Hawaiians, Appl Microbiol, 27, 961, 10.1128/AM.27.5.961-979.1974
Moore, 1978, Some current concepts in intestinal bacteriology, Am J Clin Nutr, 31, S33, 10.1093/ajcn/31.10.S33
Oyaizu, 1981, Chemotaxonomic and phenotypic characterization of the strains of species in the F lavobacterium-Cytophaga complex, J Gen Appl Microbiol, 27, 57, 10.2323/jgam.27.57
Paster, 1985, A phylogenetic grouping of the Bacteroides, Cytophagas, and certain Flavobacteria, Syst Appl Microbiol, 6, 34, 10.1016/S0723-2020(85)80008-4
Paster, 1994, Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp, and related bacteria. J Bacteriol, 176, 725, 10.1128/JB.176.3.725-732.1994
Pike, 1975, Aerobic bacteria, Ecological Aspects of Used Water Treatment, 1, 1
Pipes, 1978, Microbiology of activated sludge bulking, Adv Appl Microbiol, 24, 85, 10.1016/S0065-2164(08)70637-3
Reichenbach, 1989, Order 1, In Bergey’s Manual of Systematic Bacteriology, 3, 2011
Reichenbach, 1981, The flexirubin-type pigments, chemosystematically useful compounds, The Flavobacterium-Cytophaga Group, 101
Roberts, 1987, Chromosomal DNA probes for the identification of Bacteroides species, J Gen Microbiol, 133, 1423
Roller, 1994, In situ probing of Gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides, Microbiology, 140, 2849, 10.1099/00221287-140-10-2849
Salyers, 1984, Bacteroides of the human lower intestinal tract, Annu Rev Microbiol, 38, 293, 10.1146/annurev.mi.38.100184.001453
Schleifer, 1993, Nucleic acid probes, Handbook of New Bacterial Systematics, 464
Shah, 1992, The genus Bacteroides and related taxa, The Procaryotes, 3593, 10.1007/978-1-4757-2191-1_34
Shah, 1988, Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroidesgingivalis, and Bacteroides endodon-talis in a new genus, Porphyromonas, Int J Syst Bacteriol, 38, 128, 10.1099/00207713-38-1-128
Shah, 1989, Proposal to restrict the genus Bacteroides (Castellani and Chalmers) to Bacteroidesfragilis and closely related species, Int J Syst Bacteriol, 39, 85, 10.1099/00207713-39-1-85
Shewan, 1983, Taxonomy (and ecology) of Flavobacterium and related genera, Annu Rev Microbiol, 37, 233, 10.1146/annurev.mi.37.100183.001313
Spring, 1992, Phylogenetic diversity and identification of nonculturable magnetotactic bacteria, Syst Appl Microbiol, 15, 116, 10.1016/S0723-2020(11)80147-5
Stahl, 1991, Development and application of nucleic acid probes in bacterial systematics, Sequencing and Hybridisation Techniques in Bacterial Systematics, 205
Trebesius, 1994, Identification of whole fixed bacterial cells with nonradioactive 23S rRNA-targeted polynucleotide probes, Appl Environ Microbiol, 60, 3228, 10.1128/AEM.60.9.3228-3235.1994
Wagner, 1993, Probing activated sludge with oligonucleotides specific for proteobacteria', inadequacy of culture-dependent methods for describing microbial community structure. Appl Environ Microbiol, 59, 1520
Winogradsky, 1929, Études sur la microbiologie du sol, Sur la dégradation de la cellulose dans le sol. Ann Inst Pasteur, 43, 549
Woese, 1990a, Phylogenetic placement of Spirosomaceae, Syst Appl Microbiol, 13, 19, 10.1016/S0723-2020(11)80175-X
Woese, 1990b, The flexibacter-flavobacter connection, Syst Appl, MicrobiolTh, 161, 10.1016/S0723-2020(11)80163-3