Ancient DNA Reveals Prehistoric Gene-Flow from Siberia in the Complex Human Population History of North East Europe
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Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The History and Geography of Human Genes Princeton Univ. Press, Princeton NJ.
M Richards, 1996, Paleolithic and Neolithic lineages in the European mitochondrial gene pool, Am J Hum Genet, 59, 185
M Richards, 1998, Phylogeography of mitochondrial DNA in Western Europe, Ann Hum Genet, 62, 241, 10.1046/j.1469-1809.1998.6230241.x
M Richards, 2000, Tracing European founder lineages in the Near Eastern mtDNA pool, Am J Hum Genet, 67, 1251, 10.1016/S0002-9297(07)62954-1
A Achilli, 2004, The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool, Am J Hum Genet, 75, 910, 10.1086/425590
L Pereira, 2005, High-resolution mtDNA evidence for the late-glacial resettlement of Europe from an Iberian refugium, Genome Res, 15, 19, 10.1101/gr.3182305
B Malyarchuk, 2008, Mitochondrial DNA phylogeny in Eastern and Western Slavs, Mol Biol Evol, 25, 1651, 10.1093/molbev/msn114
M Pala, 2009, Mitochondrial haplogroup U5b3: a distant echo of the epipaleolithic in Italy and the legacy of the early Sardinians, Am J Hum Genet, 84, 814, 10.1016/j.ajhg.2009.05.004
M Pala, 2012, Mitochondrial DNA signals of late glacial recolonization of Europe from near eastern refugia, Am J Hum Genet, 90, 915, 10.1016/j.ajhg.2012.04.003
B Bramanti, 2009, Genetic discontinuity between local hunter-gatherers and central Europe's first farmers, Science, 326, 137, 10.1126/science.1176869
H Malmström, 2009, Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians, Curr Biol, 19, 1758, 10.1016/j.cub.2009.09.017
J Krause, 2010, A complete mtDNA genome of an early modern human from Kostenki, Russia, Curr Biol, 20, 231, 10.1016/j.cub.2009.11.068
M Sampietro, 2007, Palaeogenetic evidence supports a dual model of Neolithic spreading into Europe, Proc Biol Sci, 274, 2161, 10.1098/rspb.2007.0465
W Haak, 2010, Ancient DNA from European early Neolithic farmers reveals their near eastern affinities, PLoS Biol, 8, e1000536, 10.1371/journal.pbio.1000536
M Lacan, 2011, Ancient DNA reveals male diffusion through the Neolithic Mediterranean route, Proc Natl Acad Sci U S A, 108, 9788, 10.1073/pnas.1100723108
M Lacan, 2011, Ancient DNA suggests the leading role played by men in the Neolithic dissemination, Proc Natl Acad Sci U S A, 108, 18255, 10.1073/pnas.1113061108
C Gamba, 2011, Ancient DNA from an Early Neolithic Iberian population supports a pioneer colonization by first farmers, Mol Ecol, 21, 45, 10.1111/j.1365-294X.2011.05361.x
M Hervella, 2012, Ancient DNA from Hunter-Gatherer and Farmer Groups from Northern Spain Supports a Random Dispersion Model for the Neolithic Expansion into Europe, PLoS ONE, 7, e34417, 10.1371/journal.pone.0034417
JI Svendsen, 2004, Late quaternary ice sheet history of Northern Eurasia, Quat Sc Rev, 1229, 10.1016/j.quascirev.2003.12.008
J Kozlowski, 1984, The paleohistory of circumpolar arctic colonization, Arctic, 37, 359, 10.14430/arctic2220
P Dolukhanov, 1997, The Pleistocene-Holocene transition in Northern Eurasia: Environmental changes and human adaptations, Quat Internat, 181, 10.1016/S1040-6182(96)00051-1
V Shumkin, 1990, On the ethnogenesis of the Sami: An archaeological view, Acta Borealia, 7, 3, 10.1080/08003839008580387
TD Price, 1991, The Mesolithic of Northern Europe, Annu Rev Anthropol, 20, 211, 10.1146/annurev.an.20.100191.001235
K Jacobs, 1995, Returning to Oleni' ostrov: Social, Economic, and Skeletal Dimensions of a Boreal Forest Mesolithic Cemetery, J Anthropol Archaeol, 14, 359, 10.1006/jaar.1995.1018
M Zvelebil, 1991, The transition to farming in Eastern and Northern Europe, J W Prehist, 5, 233, 10.1007/BF00974991
Forte A, Oram R, Pedersen F (2005) Viking Empires. Cambridge University Press.
O Balanovsky, 2008, Two sources of the Russian patrilineal heritage in their Eurasian context, Am J Hum Genet, 82, 236, 10.1016/j.ajhg.2007.09.019
Grousset R (1970) The Empire of the Steppes: History of Central Asia. Rutgers University Press.
Sammallahti P (1998) The Saami languages: an introduction. Davvi Girji, Kárásjohka/Karasjoki, Vaasa.
K Tambets, 2004, The Western and Eastern roots of the Saami-the story of genetic “outliers” told by mitochondrial DNA and Y chromosomes, Am J Hum Genet, 74, 661, 10.1086/383203
L Beckman, 1998, Transferrin variants as markers of migrations and admixture between populations in the Baltic Sea region, Hum Hered, 48, 185, 10.1159/000022800
R Andrews, 1999, Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA, Nat Genet, 23, 147, 10.1038/13779
A Sajantila, 1995, Genes and languages in Europe: an analysis of mitochondrial lineages, Genome Res, 5, 42, 10.1101/gr.5.1.42
L Pliss, 2006, Mitochondrial DNA portrait of Latvians: towards the understanding of the genetic structure of Baltic-speaking populations, Ann Hum Genet, 70, 439, 10.1111/j.1469-1809.2005.00238.x
M Ingman, 2007, A recent genetic link between Sami and the Volga-Ural region of Russia, Eur J Hum Genet, 15, 115, 10.1038/sj.ejhg.5201712
A Achilli, 2005, Saami and Berbers–an unexpected mitochondrial DNA link, Am J Hum Genet, 76, 883, 10.1086/430073
T Lappalainen, 2008, Migration waves to the Baltic Sea region, Ann Hum Genet, 72, 337, 10.1111/j.1469-1809.2007.00429.x
K Jacobs, 1992, Human population differentiation in the peri-Baltic Mesolithic: the odontometrics of Oleneostrovskii mogilnik (Karelia), Human Evolution, 7, 33, 10.1007/BF02436411
VG Moiseyev, 2012, Early Metal Age Crania from Bolshoy Oleniy Island, Barents Sea, Archaeology, Ethnology and Anthropology of Eurasia, 40, 145, 10.1016/j.aeae.2012.05.018
DC Wallace, 1999, Mitochondrial DNA variation in human evolution and disease, Gene, 238, 211, 10.1016/S0378-1119(99)00295-4
M Ingman, 2000, Mitochondrial genome variation and the origin of modern humans, Nature, 408, 708, 10.1038/35047064
N Maca-Meyer, 2001, Major genomic mitochondrial lineages delineate early human expansions, BMC Genet, 2, 13, 10.1186/1471-2156-2-13
C Herrnstadt, 2002, Reduced-median-network analysis of complete mitochondrial DNA coding region sequences for the major African, Asian, and European haplogroups, Am J Hum Genet, 70, 1152, 10.1086/339933
D Mishmar, 2003, Natural selection shaped regional mtDNA variation in humans, Proc Natl Acad Sci U S A, 100, 171, 10.1073/pnas.0136972100
QP Kong, 2003, Phylogeny of East Asian mitochondrial DNA lineages inferred from complete sequences, Am J Hum Genet, 73, 671, 10.1086/377718
C Anderson, 2005, Serial SimCoal: a population genetics model for data from multiple populations and points in time, Bioinformatics, 21, 1733, 10.1093/bioinformatics/bti154
MA Beaumont, 2002, Approximate Bayesian computation in population genetics, Genetics, 162, 2025, 10.1093/genetics/162.4.2025
H Akaike, 1974, A new look at the statistical model identification, IEEE Trans Automat Contr, 19, 716, 10.1109/TAC.1974.1100705
Burnham KP, Anderson DR (2002) Model selection and multimodel inference: A practical information-theoretic approach, 2nd edition. New York: Springer.
D Posada, 2004, Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests, Syst Biol, 53, 793, 10.1080/10635150490522304
M Derenko, 2007, Phylogeographic analysis of mitochondrial DNA in northern Asian populations, Am J Hum Genet, 81, 1025, 10.1086/522933
C Keyser-Tracqui, 2003, Nuclear and mitochondrial DNA analysis of a 2,000-year-old necropolis in the Egyin Gol Valley of Mongolia, Am J Hum Genet, 73, 247, 10.1086/377005
C Keyser, 2009, Ancient DNA provides new insights into the history of south Siberian Kurgan people, Hum Genet, 126, 395, 10.1007/s00439-009-0683-0
F Sánchez-Quinto, 2012, Genomic Affinities of Two 7,000-Year-Old Iberian Hunter-Gatherers, Curr Biol
P Skoglund, 2012, Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe, Science, 336, 466, 10.1126/science.1216304
DM Behar, 2012, A “Copernican” reassessment of the human mitochondrial DNA tree from its root, Am J Hum Genet, 90, 675, 10.1016/j.ajhg.2012.03.002
EL Loogväli, 2004, Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia, Mol Biol Evol, 21, 2012, 10.1093/molbev/msh209
S Hartz, 2010, New AMS-dates for the Upper Volga Mesolithic and the origin of microblade technology in Europe, Quartär, 57, 155
VA Zakh, 2010, Climate and Environmental Dynamics of the Mid- to Late Holocene Settlement in the Tobol-Ishim Forest-Steppe Region, West Siberia, Quatern Int, 220, 95, 10.1016/j.quaint.2009.09.010
M Derenko, 2010, Origin and post-glacial dispersal of mitochondrial DNA haplogroups C and D in Northern Asia, PLoS ONE, 5, e15214, 10.1371/journal.pone.0015214
B Malyarchuk, 2010, Mitogenomic diversity in Tatars from the Volga-Ural region of Russia, Mol Biol Evol, 27, 2220, 10.1093/molbev/msq065
AA Velichko, 2009, Progressively cooler, drier interglacials in southern Russia through the Quaternary: Evidence from the Sea of Azov region, Quatern Int, 198, 204, 10.1016/j.quaint.2008.06.005
AA Vybornov, 2008, New data on radiocarbon chronology of Neolithic ceramics from the Volga-Kama region, Archaeology, Ethnology and Anthropology of Eurasia, 36, 15, 10.1016/j.aeae.2009.03.002
Gronenborn D (2009) Transregional culture contacts and the neolithization process in Northern Central Europe. In: Jordan P, Zvelebil M, editors. Ceramics before Farming: the Origins and Dispersal of Pottery among Hunter-Gatherers of Northern Eurasia from 16 000 BP. London: University College London Institute of Archaeology Publications, Left Coast Press. pp. 527–550.
Hommel P (2009) Hunter Gatherer Pottery: an Emerging 14C Chronology. In: Jordan P, Zvelebil M, editors. Ceramics before Farming: the Origins and Dispersal of Pottery among Hunter-Gatherers of Northern Eurasia from 16 000 BP. London: University College London Institute of Archaeology Publications, Left Coast Press.
HV Hunt, 2011, Genetic diversity and phylogeography of broomcorn millet (Panicum miliaceum L.) across Eurasia, Mol Ecol, 20, 4756, 10.1111/j.1365-294X.2011.05318.x
MD Frachetti, 2011, Migration Concepts in Central Eurasian Archaeology, Annu Rev Anthropol, 40, 195, 10.1146/annurev-anthro-081309-145939
L Klassen, 2004, Jade und Kupfer. Untersuchungen zum Neolithisierungsprozeß im westlichen Ostseeraum unter besonderer Berücksichtigung der Kulturentwicklung Europas 5500-3500 BC, Jysk Arkæologisk Selskabs
Hartz S, Lübke H, Terberger T (2007) From fish and seal to sheep and cattle: new research into the process of neolithization in northern Germany. In: Whittle A, Cummings V, editors. Going Over: the Mesolithic-Neolithic Transition in North-West Europe. London: Proceedings of the British Academy 144. pp. 567–594.
Larsson L (2007) Mistrust traditions, consider innovations? The Mesolithic-Neolithic transition in Southern Scandinavia. In: Whittle A, Cummings V, editors. Going Over: the Mesolithic-Neolithic Transition in North-West Europe. London: Proceedings of the British Academy 144. pp. 85–104.
Gronenborn D (2011) Early pottery in Afroeurasia - Origins and possible routes of dispersal. In: Hartz S, Lüth F, Terberger T, editors. Early Pottery in the Baltic - Dating, Origin, and social Context, International Workshop at Schleswig from 20th to 21st October 2006. Bericht der Römisch-Germanischen Kommission 89. pp. 59–88.
M Zvelebil, 2006, Mobility, contact, and exchange in the Baltic Sea basin 6000–2000 BC, J Anthropol Archaeol, 25, 178, 10.1016/j.jaa.2005.11.003
H Piezonka, 2008, Neue AMS-Daten zur frühneolithischen Keramikentwicklung in der nordosteuropäischen Waldzone, Est J Archaeol, 12, 67, 10.3176/arch.2008.2.01
Skandfer M (2009) History as if Neolithisation mattered: the transition to Late Stone Age in northern Fennoscandia. In: Glørstad H, Prescott C, editors. Neolithisation as if History Mattered Process of Neolithisation in North-Western Europe, Neolithisation as if History Mattered. Lindome: Bricoleur Press. pp. 85–104.
Matiskainen H (2011) The adoption of pottery in Mesolithic Finland - Sources of impulses, when and why? In: Hartz S, Lüth F, Terberger T, editors. Early Pottery in the Baltic - Dating, Origin, and social Context, International Workshop at Schleswig from 20th to 21st October 2006. Bericht der Römisch-Germanischen Kommission 89. pp. 181–192.
B Malyarchuk, 2010, The peopling of Europe from the mitochondrial haplogroup U5 perspective, PLoS ONE, 5, e10285, 10.1371/journal.pone.0010285
N von Cramon-Taubadel, 2011, Craniometric data support a mosaic model of demic and cultural Neolithic diffusion to outlying regions of Europe, Proc Biol Sci, 278, 2874, 10.1098/rspb.2010.2678
Gurina NN (1956) Oleneostrovski Mogil'nik. In Materialy i Issledovaniya po Arkheologgi SSSR. Moscow: Nauka, Akademia Nauk SSSR.
J O'Shea, 1984, Oleneostrovskii Mogilnik: Reconstructing Social and Economic Organisation of Prehistoric Hunter-Fishers in Northern Russia, J Anthropol Archaeol, 1, 1, 10.1016/0278-4165(84)90011-4
Wood R (2006) Chronometric and paleodietary studies at the Mesolithic and Neolithic burial ground of Minino, NW Russia. Dissertation for the MSc in archaeological Science. Oxford University.
Oshibkina SV (1999) Tanged Point Industries in the North-West of Russia. In: Kozlowski SK, Gurba J, Zaliznyak LL, editors. Tanged Points Cultures in Europe. Lublin.
W Haak, 2005, Ancient DNA from the first European farmers in 7500-year-old Neolithic sites, Science, 310, 1016, 10.1126/science.1118725
Bandelt HJ (2006) Estimation of Mutation Rates and Coalescence Times: Some Caveats. In: Bandelt HJ, Macaulay V, Richards M. Mitochondrial DNA and the evolution of Homo sapiens. Berlin: Springer-Verlag. pp. 64.
S Pääbo, 2004, Genetic analyses from ancient DNA, Annu Rev Genet, 38, 645, 10.1146/annurev.genet.37.110801.143214
JP Noonan, 2005, Genomic sequencing of Pleistocene cave bears, Science, 309, 597, 10.1126/science.1113485
H Malmström, 2007, More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA behavior to identify authentic ancient human DNA, Mol Biol Evol, 24, 998, 10.1093/molbev/msm015
CJ Adler, 2010, Survival and recovery of DNA from ancient teeth and bones, J Archaeol Sci, 38, 956, 10.1016/j.jas.2010.11.010
L Excoffier, 2005, Arlequin ver. 3.0: An integrated software package for population genetics data analysis, Evolutionary Bioinformatics Online, 1, 47
S Ho, 2008, The crucial role of calibration in molecular date estimates for the peopling of the Americas, Am J Hum Genet, 83, 142, 10.1016/j.ajhg.2008.06.014