Abundant genetic diversity of the wild rice Zizania latifolia in central China revealed by microsatellites

Annals of Applied Biology - Tập 161 Số 2 - Trang 192-201 - 2012
Yudong Chen1, Hai-Jia Chu1, H. Liu2, Y.‐L. Liu1
1Key Laboratory of Aquatic Plant and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China
2Institute of Hydroecology Ministry of Water Resources and Chinese Academy of Sciences Wuhan Hubei China

Tóm tắt

Abstract

Wild rice Zizania latifolia is a perennial emergent aquatic plant widely distributed across China. Wild populations of Z. latifolia are important to aquatic ecosystems and are valuable genetic resources for breeding. However, they have been faced with significant habitat losses in recent decades. For 10 nuclear microsatellites, high levels of genetic diversity (HE = 0.572–0.636) were found across seven surveyed populations from central China. The main factors responsible for that were its long life history and predominant outcrossing reproductive system. Low genetic differentiation among populations was found based on Wright's FST = 0.098. Similarly, AMOVA analysis showed only 7.73% of the total molecular variation was attributed to inter‐population differentiation. The weak population structure of Z. latifolia could be due to high gene flow mediated by water or birds (Nm = 2.30, M = 2.18). Importantly, most populations exhibited mutation‐drift disequilibrium, suggesting a recent population decline. Based on the results, wild populations of Z. latifolia are expected to lose genetic diversity and increase genetic structure in future generations. Therefore, conservation management is urgently needed to maintain the genetic resources of Z. latifolia.

Từ khóa


Tài liệu tham khảo

10.1007/s10709-005-4916-4

10.1007/BF03030575

10.1139/g05-097

10.1016/j.aquabot.2007.08.002

10.1111/j.1365-2427.2008.02165.x

10.1016/j.bse.2010.12.016

10.1016/j.bse.2011.07.013

10.1098/rspb.1999.0918

10.1093/genetics/144.4.2001

10.1073/pnas.91.8.3166

10.1007/s10592-005-9073-x

DuvallM.R.(1987) A systematic evaluation of the genusZizania(Poaceae). PhD Thesis. University of Minnesota Minnesota USA.

10.1038/sj.hdy.6801001

10.2307/2656649

10.1046/j.1365-294X.2003.01702.x

10.1111/j.1365-294X.2004.02108.x

10.1111/j.1365-294X.2005.02758.x

10.1007/s00122-002-1027-9

GoudetJ.(2001) FSTAT ver 2.9.3 A program to estimate and test gene diversities and fixation indices.http://www.unil.ch/izea/softwares/fstat.html

10.1139/g01-050

10.1007/s10722-006-9102-8

10.1098/rstb.1996.0112

10.1007/s00606-008-0096-x

10.1016/j.aquabot.2006.09.007

10.1111/j.1558-5646.1999.tb03767.x

10.1126/science.163.3864.276

10.1016/S0006-3207(01)00259-2

10.1046/j.1523-1739.1999.98278.x

LiW.(1995) Studies on aquatic vegetation and its succession in Honghu Lake. PhD Thesis. Institute of Hydrobiology the Chinese Academy of Sciences Wuhan China.

10.1016/j.aquabot.2004.07.003

Liu L., 2002, 16

10.3732/ajb.92.6.990

10.1111/j.1095-8312.1998.tb01520.x

MillerM.P.(1997)Tools for population genetics analysis (TFPGA). Verson 1.3. A Windows program for the analysis of allozyme and molecular population genetic data. Computer software distributed by author.

10.1086/282771

10.1007/BF02551462

10.1111/j.1365-294X.2004.02141.x

10.1046/j.1523-1739.1998.012003502.x

10.1023/A:1015293530776

10.1111/j.1471-8286.2005.01155.x

10.1093/jhered/90.4.502

10.1002/jsfa.4557

10.1111/j.1755-0998.2008.02357.x

10.1111/j.1558-5646.1989.tb04220.x

10.1139/b89-255

Schneider S., 2000, Arlequin: A Software for Population Genetics Data Analysis, Version 2.0

10.1093/molbev/msi082

10.1111/j.1558-5646.1989.tb02587.x

10.1007/s00122-003-1380-3

SPSS, 2008, Statistical Software Package,

Sun Y.R., 1905, Correct Meaning of the Book of Rites of the Zhou Dynasty

10.1046/j.1365-294X.2003.01898.x

Terrell E., 1997, Taxonomy of North American species of Zizania (Poaceae), Sida, 17, 533

10.1111/j.1471-8286.2004.00684.x

10.1038/hdy.2008.61

10.3732/ajb.91.5.682

10.1007/s10722-009-9498-z

Xie P., 1999, Threats to biodiversity in Chinese inland waters, Ambio, 26, 674

XuH. (2006) A study on the recent 20 years' change ofZizania latifoliacommunity in Liangzi lake by using remote sensed images. Master Thesis. Central China Normal University Wuhan China.

Xu S.B., 2002, A simple and rapid method used for silver staining and gel preservation, Hereditas (Beijing), 24, 335

10.1007/s00122-008-0717-3

10.1016/j.ympev.2009.11.018

Xu Z., 2003, The Records of Yangtze River—Preventing and Controlling Flood

Yang Y.F., 1999, Study on the structures of clone population Zizania latifolia in wetland of the Songnen Plain of China, Acta Prataculturae Sinca, 8, 66

10.1111/j.1469-8137.2007.02175.x

10.1038/hdy.1993.136

Zhang X.F., 2006, Socioeconomic Studies in the Regions to the South of Yangtze River, 170

10.1007/s00122-003-1251-y