A stochastic model of the emergence of autocatalytic cycles
Tóm tắt
Từ khóa
Tài liệu tham khảo
Cornish-Bowden A, Cardenas ML: Self-organization at the origin of life. Journal of theoretical biology 2008,252(3):411–8. 10.1016/j.jtbi.2007.07.035
Stano P, Luisi PL: Achievements and open questions in the self-reproduction of vesicles and synthetic minimal cells. Chemical communications (Cambridge, England) 2010,46(21):3639–53. 10.1039/b913997d
Schrum JP, Zhu TF, Szostak JW: The Origins of Cellular Life. Cold Spring Harbor perspectives in biology 2010,2(9):a002212. 10.1101/cshperspect.a002212
Budin I, Szostak JW: Expanding Roles for Diverse Physical Phenomena During the Origin of Life. Annual review of biophysics 2010, 39: 245–63. 10.1146/annurev.biophys.050708.133753
Miller SL: A production of amino acids under possible primitive Earth conditions. Science 1953, 117: 528–529. 10.1126/science.117.3046.528
Cairns-Smith G: Genetic Takeover and the Mineral Origins of Life. New York: Cambridge University Press; 1982.
Kauffman SA: Autocatalytic sets of proteins. J Theor Biol 1986, 119: 1–24. 10.1016/S0022-5193(86)80047-9
Kalapos MP: The energetics of the reductive citric acid cycle in the pyrite-pulled surface metabolism in the early stage of evolution. Journal of theoretical biology 2007,248(2):251–8. 10.1016/j.jtbi.2007.05.001
Orgel LE: The implausibility of metabolic cycles on the prebiotic Earth. PLoS biology 2008, 6: e18. 10.1371/journal.pbio.0060018
Powner MW, Gerland B, Sutherland JD: Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions. Nature 2009,459(7244):239–42. 10.1038/nature08013
Lee DH, Granja JR, Martinez JA, Severin K, Ghadri MR: A self-replicating peptide. Nature 1996,382(6591):525–8. 10.1038/382525a0
Lee DH, Severin K, Yokobayashi Y, Ghadiri MR: Emergence of symbiosis in peptide self-replication through a hypercyclic network. Nature 1997,390(6660):591–4. 10.1038/37569
Issac R, Chmielewski J: Approaching Exponential Growth with a Self-Replicating Peptide. Journal of the American Chemical Society 2002,124(24):6808–6809. 10.1021/ja026024i
Bachmann PA, Luisi PL, Lang J: Autocatalytic self-replicating micelles as models for prebiotic structures. Nature 1992,357(6373):57–59. 10.1038/357057a0
Segre D, Lancet D, Kedem O, Pilpel Y: Graded Autocatalysis Replication Domain (GARD): kinetic analysis of self-replication in mutually catalytic sets. Orig Life Evol Biosph 1998,28(4–6):501–514.
Müller UF: Re-creating an RNA world. Cellular and molecular life sciences : CMLS 2006,63(11):1278–93. 10.1007/s00018-006-6047-1
De Lucrezia D, Anella F, Chiarabelli C: Question 5: on the chemical reality of the RNA world. Orig Life Evol Biosph 2007,37(4–5):379–385. 10.1007/s11084-007-9098-x
Anastasi C, Buchet FF, Crowe MA, Parkes AL, Powner MW, Smith JM, Sutherland JD: RNA: prebiotic product, or biotic invention? Chemistry & biodiversity 2007,4(4):721–39. 10.1002/cbdv.200790060
Talini G, Gallori E, Maurel MC: Natural and unnatural ribozymes: back to the primordial RNA world. Research in microbiology 2009,160(7):457–65. 10.1016/j.resmic.2009.05.005
Rios AC, Tor Y: Model systems: how chemical biologists study RNA. Current opinion in chemical biology 2009,13(5–6):660–8. 10.1016/j.cbpa.2009.09.028
Costanzo G, Pino S, Ciciriello F, Di Mauro E: Generation of long RNA chains in water. The Journal of biological chemistry 2009,284(48):33206–16. 10.1074/jbc.M109.041905
Ogasawara H, Yoshida A, Imai E, Honda H, Hatori K, Matsuno K: Synthesizing oligomers from monomeric nucleotides in simulated hydrothermal environments. Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life 2000,30(6):519–26. 10.1023/A:1026539708173
Mitsuzawa S, Watanabe SI: Continuous growth of autocatalytic sets. Bio Systems 2001, 59: 61–9. 10.1016/S0303-2647(00)00145-3
Dyson FJ: Origins of life. Cambridge: Cambridge University Press; 1985.
Eigen M, Schuster P: The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle. Die Naturwissenschaften 1977,64(11):541–65. 10.1007/BF00450633
Eigen M, Schuster P: The Hypercycle: a Principle of Natural Self-Organisation, Part C. Naturwissenschaften 1978,65(7):341–369. 10.1007/BF00439699
Eigen M, Schuster P: The Hypercycle: a Principle of Natural Self-Organisation, Part B. Naturwissenschaften 1978, 65: 7–41. 10.1007/BF00420631
Jain S, Krishna S: Autocatalytic set and the growth of complexity in an evolutionary model. Phys Rev Lett 1998, 81: 5684–5687. 10.1103/PhysRevLett.81.5684
Kaneko K: Life: An Introduction to Complex Systems Biology (Understanding Complex Systems). Secaucus, NJ, USA: Springer-Verlag New York, Inc; 2006.
Hordijk W, Hein J, Steel M: Autocatalytic Sets and the Origin of Life. Entropy 2010,12(7):1733–1742. 10.3390/e12071733
Hordijk W, Steel M: Detecting autocatalytic, self-sustaining sets in chemical reaction systems. Journal of theoretical biology 2004,227(4):451–461. 10.1016/j.jtbi.2003.11.020
Mossel E, Steel M: Random biochemical networks: the probability of self-sustaining autocatalysis. Journal of theoretical biology 2005,233(3):327–36. 10.1016/j.jtbi.2004.10.011
Farmer J, Kauffman S: Autocatalytic replication of polymers. Physica D: Nonlinear Phenomena 1986, 220: 50–67.
Packard NH, Perelson AS: The immune system, adaptation, and machine learning. Physica D 1986,22(2):187–204.
Bagley RJ, Farmer JD, Kauffman SA, Packard NH, Perelson AS, Stadnyk IM: Modeling adaptive biological systems. Bio Systems 1989,23(2–3):113–37. discussion 138 10.1016/0303-2647(89)90016-6
Bagley R, Farmer JD: Spontaneous emergence of a metabolism. Artificial Life II. Santa Fe Institute Studies in the Sciences of Complexity 1992, X: 93–141.
Steel M: The emergence of a self-catalysing structure in abstract origin-of-life models. Applied Mathematics Letters 2000,13(3):91–95. 10.1016/S0893-9659(99)00191-3
Ferris JP, Hill AR, Liu R, Orgel LE: Synthesis of long prebiotic oligomers on mineral surfaces. Nature 1996,381(6577):59–61. 10.1038/381059a0
Lifson S: On the crucial stages in the origin of animate matter. Journal of molecular evolution 1997, 44: 1–8. 10.1007/PL00006115
Gorlero M, Wieczorek R, Adamala K, Giorgi A, Schininà ME, Stano P, Luisi PL: Ser-His catalyses the formation of peptides and PNAs. FEBS letters 2009, 583: 153–6. 10.1016/j.febslet.2008.11.052
Filisetti A, Serra R, Villani M, Carletti T, Füchslin RM, Poli I: Quando un insieme di reazioni e' autocatalitico? In Modelli, sistemi e applicazioni di Vita Artficiale e computazione evolutiva. Edited by: Miglino O. Fridericiana Editrice Universitaria; 2009:83–89.
Kauffman SA: Reinventing the sacred : a new view of science, reason and religion. Basic Books, New York; 2008.
Filisetti A, Serra R, Villani M, Füchslin RM, Packard NH, Kauffman SA, Poli I: A stochastic model of autocatalytic reaction networks. Proceedings of the European Conference on Complex Systems (ECCS), Lisbon 2010.