A novel targeted proteomics method for identification and relative quantitation of difference in nitration degree of OGDH between healthy and diabetic mouse

Mann, 2003, Proteomic analysis of post-translational modifications, Nat. Biotechnol., 21, 255, 10.1038/nbt0303-255

Witze, 2007, Mapping protein post-translational modifications with mass spectrometry, Nat. Methods, 4, 798, 10.1038/nmeth1100

Nørregaard Jensen, 2004, Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry, Curr. Opin. Colloid Interface Sci., 8, 33

Nelles, 2014, Plasma levels of HDL and carotenoids are lower in Alzheimer's disease patients with vascular comorbidities but plasma protein nitration and oxidation is unaffected (P3. 205), Neurology, 40, 399

Chavarría, 2013, Oxidation and nitration of α-synuclein and their implications in neurodegenerative diseases, Arch. Biochem. Biophys., 533, 25, 10.1016/j.abb.2013.02.009

Thomson, 2012, Immunoglobulins against tyrosine-nitrated epitopes in coronary artery disease, Circulation, 126, 2392, 10.1161/CIRCULATIONAHA.112.103796

Xu, 2012, Tyrosine nitration of PA700 links proteasome activation to endothelial dysfunction in mouse models with cardiovascular risk factors, PloS One, 7, e29649, 10.1371/journal.pone.0029649

Turko, 2001, Diabetes-associated nitration of tyrosine and inactivation of succinyl-CoA: 3-oxoacid CoA-transferase, Am. J. Physiol. Heart Circ. Physiol., 281, H2289, 10.1152/ajpheart.2001.281.6.H2289

Cai, 2005, Inhibition of superoxide generation and associated nitrosative damage is involved in metallothionein prevention of diabetic cardiomyopathy, Diabetes, 54, 1829, 10.2337/diabetes.54.6.1829

Giasson, 2000, Oxidative damage linked to neurodegeneration by selective α-synuclein nitration in synucleinopathy lesions, Science, 290, 985, 10.1126/science.290.5493.985

Butterfield, 2007, Elevated levels of 3-nitrotyrosine in brain from subjects with amnestic mild cognitive impairment: implications for the role of nitration in the progression of Alzheimer's disease, Brain Res., 1148, 243, 10.1016/j.brainres.2007.02.084

Moya, 2012, Immunohistochemical expression and nitration of MnSOD in the adrenal gland and the carotid body of rats exposed to chronic intermittent hypoxia, R. FASEB J., 26, 897.896

Stevens, 2008, Factors that contribute to the misidentification of tyrosine nitration by shotgun proteomics, Mol. Cell. Proteomics, 7, 2442, 10.1074/mcp.M800065-MCP200

Shi, 2011, Inactivation and reactivation of the mitochondrial α-ketoglutarate dehydrogenase complex, J. Biol. Chem., 286, 17640, 10.1074/jbc.M110.203018

McCormack, 2012, Increased α-synuclein phosphorylation and nitration in the aging primate substantia nigra, Cell. Death Dis., 3, e315, 10.1038/cddis.2012.50

Radi, 2004, Nitric oxide, oxidants, and protein tyrosine nitration, P. Natl. Acad. Sci. USA, 101, 4003, 10.1073/pnas.0307446101

Danielson, 2009, Preferentially increased nitration of α-synuclein at tyrosine-39 in a cellular oxidative model of Parkinson's disease, Anal. Chem., 81, 7823, 10.1021/ac901176t

Liu, 2004, A model for random sampling and estimation of relative protein abundance in shotgun proteomics, Anal. Chem., 76, 4193, 10.1021/ac0498563

Wolters, 2001, An automated multidimensional protein identification technology for shotgun proteomics, Anal. Chem., 73, 5683, 10.1021/ac010617e

Castro-Gamero, 2014, Shotgun Proteomics, 295, 10.1007/978-1-4939-0685-7_20

Dremina, 2011, A methodology for simultaneous fluorogenic derivatization and boronate affinity enrichment of 3-nitrotyrosine-containing peptides, Anal. Biochem., 418, 184, 10.1016/j.ab.2011.07.024

Nikov, 2003, Analysis of nitrated proteins by nitrotyrosine-specific affinity probes and mass spectrometry, Anal. Biochem., 320, 214, 10.1016/S0003-2697(03)00359-2

Lee, 2009, Chemical approach for specific enrichment and mass analysis of nitrated peptides, Anal. Chem., 81, 6620, 10.1021/ac9005099

Gillet, 2012, Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis, Mol. Cell. Proteomics, 11, O111. 016717, 10.1074/mcp.O111.016717

Michalski, 2011, More than 100000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC−MS/MS, J. Proteome Res., 10, 1785, 10.1021/pr101060v

Cook, 2011, Characterization of tyrosine nitration and cysteine nitrosylation modifications by metastable atom-activation dissociation mass spectrometry, J. Am. Soc. Mass Spectr., 22, 221, 10.1007/s13361-010-0041-4

Elviri, 2012, ETD and ECD mass spectrometry fragmentation for the characterization of protein post translational modifications, Tandem Mass Spectrom. Appl. Princ. InTech, USA, 161

Jin, 2010, Measurement of protein phosphorylation stoichiometry by SRM-MS, J. Proteome Res., 9, 2752, 10.1021/pr100024a

Mirzaei, 2010, Characterizing the connectivity of poly-ubiquitin chains by selected reaction monitoring mass spectrometry, Mol. Biosyst., 6, 2004, 10.1039/c005242f

Li, 2010, Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues, Anal. Chem., 83, 240, 10.1021/ac102319g

Zhang, 2012, Targeted proteomics for quantification of histone acetylation in Alzheimer's disease, Proteomics, 12, 1261, 10.1002/pmic.201200010

Yocum, 2009, Current affairs in quantitative targeted proteomics: multiple reaction monitoring-mass spectrometry, Brief. Funct. Genomics, 8, 145, 10.1093/bfgp/eln056

Stergachis, 2011, Rapid empirical discovery of optimal peptides for targeted proteomics, Nat. Methods, 8, 1041, 10.1038/nmeth.1770

Schilling, 2012, Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in Skyline application to protein acetylation and phosphorylation, Mol. Cell. Proteomics, 11, 202, 10.1074/mcp.M112.017707

Lange, 2008, Selected reaction monitoring for quantitative proteomics: a tutorial, Mol. Syst. Biol., 4, 1, 10.1038/msb.2008.61

MacLean, 2010, Skyline: an open source document editor for creating and analyzing targeted proteomics experiments, Bioinformatics, 26, 966, 10.1093/bioinformatics/btq054

Tang, 2014, Multiplexed parallel reaction monitoring (PRM) targets histone modifications on the Q-exactive mass spectrometer, Anal. Chem., 86, 5526, 10.1021/ac500972x

Abboud, 1985, Diabetes mellitus, thiamine-dependent megaloblastic anemia, and sensorineural deafness associated with deficient α-ketoglutarate dehydrogenase activity, J. Pediatr., 107, 537, 10.1016/S0022-3476(85)80011-1

Jin, 2008, Previsible silver staining of protein in electrophoresis gels with mass spectrometry compatibility, Anal. Biochem., 383, 137, 10.1016/j.ab.2008.04.048

Cong, 2014, Metallothionein prevents cardiac pathological changes in diabetes by modulating nitration and inactivation of cardiac ATP synthase, J. Nutr. Biochem., 25, 463, 10.1016/j.jnutbio.2013.12.007

Fu, 2009, Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences, BMC Bioinform., 10, S50, 10.1186/1471-2105-10-S1-S50

Savitski, 2006, ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures, Mol. Cell. Proteomics, 5, 935, 10.1074/mcp.T500034-MCP200

Dasari, 2007, Reliable detection of deamidated peptides from lens crystalline proteins using changes in reversed-phase elution times and parent ion masses, J. Proteome Res., 6, 3819, 10.1021/pr070182x