A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(2′-hydroxyphenyl)-pent-4-enoic acid

Microbiology (United Kingdom) - Tập 153 Số 7 - Trang 2104-2115 - 2007
Somnath Mallick1, Subhankar Chatterjee1, Tapan K. Dutta1
1Department of Microbiology, Bose Institute, Kolkata 700054, India

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Adachi, 1999, Structure of the ring cleavage product of 1-hydroxy-2-naphthoate, an intermediate of the phenanthrene-degradative pathway of Nocardioides sp. strain KP7, J Bacteriol, 181, 757, 10.1128/JB.181.3.757-763.1999

Altschul, 1990, Basic local alignment search tool, J Mol Biol, 215, 403, 10.1016/S0022-2836(05)80360-2

Balashova, 1999, Phenanthrene metabolism by Pseudomonas and Burkholderia strains, Process Biochem, 35, 291, 10.1016/S0032-9592(99)00069-2

Barnsley, 1983, Phthalate pathway of phenanthrene metabolism: formation of 2′-carboxybenzalpyruvate, J Bacteriol, 154, 113, 10.1128/JB.154.1.113-117.1983

Birnboim, 1979, A rapid alkaline procedure for screening recombinant plasmid DNA, Nucleic Acids Res, 7, 1513, 10.1093/nar/7.6.1513

Dean-Ross, 2001, Metabolism of anthracene by a Rhodococcus species, FEMS Microbiol Lett, 204, 205, 10.1111/j.1574-6968.2001.tb10886.x

Eaton, 1992, Bacterial metabolism of naphthalene: construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactions, J Bacteriol, 174, 7542, 10.1128/JB.174.23.7542-7554.1992

Evans, 1965, Oxidative metabolism of phenanthrene and anthracene by soil pseudomonads: the ring fission mechanism, Biochem J, 95, 819, 10.1042/bj0950819

Fitzgerald, 1992, 1,2-Naphthalenedicarboxylic acid: structures of channel clathrates and an unsolvated crystalline phase, Acta Crystallogr B, 48, 290, 10.1107/S0108768191013654

Gibson, 1984, Microbial degradation of aromatic hydrocarbons, Microbial Degradation of Organic Compounds, 181

Goodwin, 2005, Degradation of toluene inhibition of methyl bromide biodegradation in seawater and isolation of a marine toluene oxidizer that degrades methyl bromide, Appl Environ Microbiol, 71, 3495, 10.1128/AEM.71.7.3495-3503.2005

Guerin, 1988, Mineralization of phenanthrene by a Mycobacterium sp, Appl Environ Microbiol, 54, 937, 10.1128/AEM.54.4.937-944.1988

Habe, 2003, Genetics of polycyclic aromatic hydrocarbon metabolism in diverse aerobic bacteria, Biosci Biotechnol Biochem, 67, 225, 10.1271/bbb.67.225

Harayama, 1997, Polycyclic aromatic hydrocarbon bioremediation design, Curr Opin Biotechnol, 8, 268, 10.1016/S0958-1669(97)80002-X

Harpel, 1990, Gentisate 1,2-dioxygenase from Pseudomonas. Purification, characterization, and comparison of the enzymes from Pseudomonas testosteroni and Pseudomonas acidovorans, J Biol Chem, 265, 6301, 10.1016/S0021-9258(19)39326-3

Herrick, 1997, Natural horizontal transfer of a naphthalene dioxygenase gene between bacteria native to a coal tar-contaminated field site, Appl Environ Microbiol, 63, 2330, 10.1128/AEM.63.6.2330-2337.1997

Houghton, 1994, Catabolic potential of pseudomonads: a regulatory perspective, Biological Degradation and Bioremediation of Toxic Chemicals, 11

Jerina, 1976, Dihydrodiols from anthracene and phenanthrene, J Am Chem Soc, 98, 5988, 10.1021/ja00435a035

Kanaly, 2000, Biodegradation of high molecular weight polycyclic aromatic hydrocarbons by bacteria, J Bacteriol, 182, 2059, 10.1128/JB.182.8.2059-2067.2000

Keum, 2006, Degradation pathways of phenanthrene by Sinorhizobium sp, C4. Appl Microbiol Biotechnol, 71, 935, 10.1007/s00253-005-0219-z

Kim, 2004, Evidence for the existence of PAH-quinone reductase and catechol- O -methyltransferase in Mycobacterium vanbaalenii PYR-1, J Ind Microbiol Biotechnol, 31, 507, 10.1007/s10295-004-0178-x

Kim, 2005, Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1, Appl Microbiol Biotechnol, 67, 275, 10.1007/s00253-004-1796-y

Kiyohara, 1978, The catabolism of phenanthrene and naphthalene by bacteria, J Gen Microbiol, 105, 69, 10.1099/00221287-105-1-69

Kiyohara, 1976, Degradation of phenanthrene through o -phthalate by an Aeromonas sp, Agric Biol Chem, 40, 1075, 10.1080/00021369.1976.10862190

Kiyohara, 1982, Phenanthrene-degrading phenotype of Alcaligenes faecalis AFK2, Appl Environ Microbiol, 43, 458, 10.1128/AEM.43.2.458-461.1982

Kiyohara, 1990, Characterization of a phenanthrene degradation plasmid from Alcaligenes faecalis AFK2, J Ferment Bioeng, 69, 54, 10.1016/0922-338X(90)90164-R

Kloos, 1986, Genus IV. Staphylococcus Rosenbach 1884, 18AL, Nom. Cons. Opin. 17 Jud. Comm. 1958, 153, Bergey's Manual of Systematic Bacteriology, vol. 2, 1013

Kojima, 1961, Metapyrocatachase: a new catechol-cleaving enzyme, J Biol Chem, 236, 2223, 10.1016/S0021-9258(18)64061-X

Kreiswirth, 1983, The toxic shock syndrome exotoxin structural gene is not detectably transmitted by a prophage, Nature, 305, 709, 10.1038/305709a0

Lopez, 2006, Metabolism of fluoranthene by Mycobacterium sp. strain AP1, Appl Microbiol Biotechnol, 70, 747, 10.1007/s00253-005-0120-9

Ma, 2006, Pseudomonas , the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer, Environ Microbiol, 8, 455, 10.1111/j.1462-2920.2005.00911.x

Marston, 2001, Effect of a complex environmental mixture from coal tar containing polycyclic aromatic hydrocarbons (PAH) on tumor initiation, PAH-DNA binding and metabolic activation of carcinogenic PAH in mouse epidermis, Carcinogenesis, 22, 1077, 10.1093/carcin/22.7.1077

Mastrangelo, 1996, Polycyclic aromatic hydrocarbons and cancer in man, Environ Health Perspect, 104, 1166, 10.1289/ehp.961041166

Moody, 2001, Degradation of phenanthrene and anthracene by cell suspensions of Mycrobacterium sp. strain PYR-1, Appl Environ Microbiol, 67, 1476, 10.1128/AEM.67.4.1476-1483.2001

Moreira, 1997, Megaplasmids in Thermus oshimai isolates from two widely separated geographical areas: restriction fragment profiling and DNA homology, Arch Microbiol, 168, 473, 10.1007/s002030050524

Mrozik, 2002, A comparison of biodegradation of phenol and homologous compounds by Pseudomonas vesicularis and Staphylococcus sciuri strains, Acta Microbiol Pol, 51, 367

Narro, 1992, Metabolism of phenanthrene by the marine cyanobacterium Agmenellum quadruplicatum PR-6, Appl Environ Microbiol, 58, 1351, 10.1128/AEM.58.4.1351-1359.1992

Parrish, 2004, Effectiveness of phytoremediation as a secondary treatment for polycyclic aromatic hydrocarbons (PAHs) in composted soil, Int J Phytoremediation, 6, 119, 10.1080/16226510490454803

Pelkonen, 1982, Metabolism of polycyclic hydrocarbons: etiologic role in carcenogenesis, Pharmacol Rev, 34, 189

Pinyakong, 2000, Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2, FEMS Microbiol Lett, 191, 115, 10.1111/j.1574-6968.2000.tb09327.x

Pothuluri, 1994, Microbial metabolism of polycyclic aromatic hydrocarbons, Biological Degradation and Bioremediation of Toxic Chemicals, 92

Prabhu, 2003, Biodegradation of phenanthrene by Pseudomonas sp. strain PP2: novel metabolic pathway, role of biosurfactant and cell surface hydrophobicity in hydrocarbon assimilation, Appl Microbiol Biotechnol, 61, 342, 10.1007/s00253-002-1218-y

Rehmann, 1998, Pyrene degradation by Mycobacterium sp. strain KR2, Chemosphere, 36, 2977, 10.1016/S0045-6535(97)10240-5

Rehmann, 2001, Fluoranthene metabolism in Mycobacterium sp. strain KR20: identity of pathway intermediates during degradation and growth, Microbiology, 147, 2783, 10.1099/00221287-147-10-2783

Samanta, 1999, Degradation of phenanthrene by different bacteria: evidence for novel transformation sequences involving the formation of 1-naphthol, Appl Microbiol Biotechnol, 53, 98, 10.1007/s002530051621

Samanta, 2002, Polycyclic aromatic hydrocarbons: environmental pollution and bioremediation, Trends Biotechnol, 20, 243, 10.1016/S0167-7799(02)01943-1

Schenk, 1992, Improved method for electroporation of Staphylococcus aureus, FEMS Microbiol Lett, 94, 133, 10.1111/j.1574-6968.1992.tb05302.x

Seo, 2006a, Degradation of phenanthrene by Burkholderia sp. C3: initial 1,2- and 3,4-dioxygenation and meta - and ortho -cleavage of naphthalene-1,2-diol, Biodegradation, 18, 123, 10.1007/s10532-006-9048-8

Seo, 2006b, Phenanthrene degradation in Arthrobacter sp. P1-1: initial 1,2-, 3,4- and 9,10-dioxygenation, and meta - and ortho -cleavages of naphthalene-1,2-diol after its formation from naphthalene-1,2-dicarboxylic acid and hydroxyl naphthoic acids, Chemosphere, 65, 2388, 10.1016/j.chemosphere.2006.04.067

Shuttleworth, 1995, Environmental aspects of PAH biodegradation, Appl Biochem Biotechnol, 54, 291, 10.1007/BF02787927

Smibert, 1994, Phenotypic characterization, Methods for General and Molecular Bacteriology, 611

Survery, 2004, Hydrocarbon degrading bacteria from Pakistani soil: isolation, identification, screening and genetical studies, Pak J Biol Sci, 7, 1518, 10.3923/pjbs.2004.1518.1522

Sutherland, 1990, Stereoselective formation of a K-region dihydrodiol from phenanthrene by Streptomyces flavovirens, Arch Microbiol, 154, 260, 10.1007/BF00248965

Tortella, 2005, Fungal diversity and use in decomposition of environmental pollutants, Crit Rev Microbiol, 31, 197, 10.1080/10408410500304066

Tsuda, 1999, Mobile catabolic genes in bacteria, J Biosci Bioeng, 87, 401, 10.1016/S1389-1723(99)80086-3

Vila, 2001, Identification of a novel metabolite in the degradation of pyrene by Mycobacterium sp. strain AP1: actions of the isolate on two- and three-ring polycyclic aromatic hydrocarbons, Appl Environ Microbiol, 67, 5497, 10.1128/AEM.67.12.5497-5505.2001

Vinas, 2005, Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil, Appl Environ Microbiol, 71, 7008, 10.1128/AEM.71.11.7008-7018.2005

Xue, 2005, Metabolic activation of polycyclic and heterocyclic aromatic hydrocarbons and DNA damage: a review, Toxicol Appl Pharmacol, 206, 73, 10.1016/j.taap.2004.11.006