Proportionality: A Valid Alternative to Correlation for Relative Data
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J van de Peppel, 2003, Monitoring global messenger RNA changes in externally controlled microarray experiments, EMBO Reports, 4, 387, 10.1038/sj.embor.embor798
K Faust, 2012, Microbial co-occurrence relationships in the human microbiome, PLoS Comput Biol, 8, e1002606, 10.1371/journal.pcbi.1002606
J Friedman, 2012, Inferring correlation networks from genomic survey data, PLoS Comput Biol, 8, e1002687, 10.1371/journal.pcbi.1002687
K Pearson, 1897, Mathematical contributions to the theory of evolution—on a form of spurious correlation which may arise when indices are used in the measurement of organs, Proceedings of the Royal Society of London, 60
S Marguerat, 2012, Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells, Cell, 151, 671, 10.1016/j.cell.2012.09.019
J Lovén, 2012, Revisiting global gene expression analysis, Cell, 151, 476, 10.1016/j.cell.2012.10.012
V Pawlowsky-Glahn, 2014, Tools for compositional data with a total, Statistical Modelling
JJ Egozcue, 2011, Basic concepts and procedures, 12
D O’Neil, 2001, Ribosomal RNA depletion for efficient use of RNASeq capacity
D Lovell, 2013, Have you got things in proportion? a practical strategy for exploring association in high-dimensional compositions, 100
L López-Kleine, 2013, Biostatistical approaches for the reconstruction of gene co-expression networks based on transcriptomic data, Briefings in Functional Genomics, 12, 457, 10.1093/bfgp/elt003
B Zhang, 2005, A general framework for weighted gene co-expression network analysis, Statistical Applications in Genetics and Molecular Biology, 4, 10.2202/1544-6115.1128
MB Eisen, 1998, Cluster analysis and display of genome-wide expression patterns, Proceedings of the National Academy of Sciences, 95, 14863, 10.1073/pnas.95.25.14863
R Vencio, 2007, Simcluster: clustering enumeration gene expression data on the simplex space, BMC Bioinformatics, 8, 246, 10.1186/1471-2105-8-246
D Lovell, 2010, Caution! compositions! technical report and companion software (publication—technical), Technical Report EP10994, CSIRO
AJ Butte, 2000, Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements, volume 5, 418
T Obayashi, 2011, COXPRESdb: a database to compare gene coexpression in seven model animals, Nucleic Acids Research, 39, D1016, 10.1093/nar/gkq1147
D Chen, 2003, Global transcriptional responses of fission yeast to environmental stress, Molecular Biology of the Cell, 14, 214, 10.1091/mbc.E02-08-0499
JR Warner, 1999, The economics of ribosome biosynthesis in yeast, Trends in Biochemical Sciences, 24, 437, 10.1016/S0968-0004(99)01460-7
L López-Maury, 2008, Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation, Nature Reviews Genetics, 9, 583, 10.1038/nrg2398
JA Martín-Fernández, 2011, Dealing with zeros, 43
J Bacon-Shone, 2008, Discrete and continuous compositions
M Greenacre, 2011, Compositional data and correspondence analysis, 104
DI Warton, 2006, Bivariate line-fitting methods for allometry, Biological Reviews, 81, 259, 10.1017/S1464793106007007
B Zheng, 2000, Summarizing the goodness of fit of generalized linear models for longitudinal data, Statistics in Medicine, 19, 1265, 10.1002/(SICI)1097-0258(20000530)19:10<1265::AID-SIM486>3.0.CO;2-U
