AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

Journal of Computational Chemistry - Tập 31 Số 2 - Trang 455-461 - 2010
Oleg Trott1, Arthur J. Olson1
1The Scripps Research Institute, Molecular Biology, La Jolla, CA

Tóm tắt

AbstractAutoDock Vina, a new program for molecular docking and virtual screening, is presented. AutoDock Vina achieves an approximately two orders of magnitude speed‐up compared with the molecular docking software previously developed in our lab (AutoDock 4), while also significantly improving the accuracy of the binding mode predictions, judging by our tests on the training set used in AutoDock 4 development. Further speed‐up is achieved from parallelism, by using multithreading on multicore machines. AutoDock Vina automatically calculates the grid maps and clusters the results in a way transparent to the user. © 2009 Wiley Periodicals, Inc. J Comput Chem 2010

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Thông tin xuất bản

Journal of Computational Chemistry

Tập 31 Số 2

455-461

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