Genetic analysis of 50 Y-STR loci in Dong, Miao, Tujia, and Yao populations from Hunan
Tóm tắt
To investigate the genetic polymorphism of Y chromosome short tandem repeat (Y-STR) loci in Dong, Miao, Tujia, and Yao minority populations from Hunan Province, China. Fifty Y-STRs (DYS392, DYS389I/II, DYS447, DYS438, DYS527, DYS645, DYS596, DYS391, DYS456, DYS19, DYS593, DYS448, DYS627, DYS557, DYS437, DYS481, DYS533, DYS390, DYS385, DYF387S1, DYS460, DYS393, Y_GATA_H4, DYS439, DYS635, DYS444, DYS643, DYS549, DYS576, DYS570, DYS458, DYS449, DYS518, DYS531, DYS630, DYS622, DYS552, DYS510, DYS459a/b, DYS446, DYS443, DYS587, Y_GATA_A10, DYS520, DYS522) were analyzed for 2553 unrelated healthy male individuals from Hunan (643 Dong males, 666 Miao males, 633 Tujia males, 611 Yao males) using AGCU Y37 and AGCU Y SUPP STR amplification system. There were 624 different haplotypes in 643 unrelated Dong males, 662 in 666 unrelated Miao males, 627 in 633 unrelated Tujia males, and 587 in 611 unrelated Yao males. The haplotype diversities of Dong, Miao, Tujia, and Yao were determined as 0.999879, 0.999982, 0.999970, and 0.999860, respectively. Analysis of molecular variance (AMOVA) tests demonstrated that genetic distance between Miao and Tujia was the smallest (0.0003), while the genetic distance between Dong and Yao was the largest (0.0252). The 50 Y-STR loci in the four minority populations from Hunan Province revealed a highly polymorphic genetic distribution, which showed a high potential for population genetics and forensic practice.
Tài liệu tham khảo
Huang D, Shi S, Zhu C, Yi S, Ma W, Wang H, Li H (2011) Y-haplotype screening of local patrilineages followed by autosomal STR typing can detect likely perpetrators in some populations. J Forensic Sci 56(5):1340–1342. https://doi.org/10.1111/j.1556-4029.2011.01830.x
Leite FPN, Callegari-Jacques SM, Carvalho BA, Kommers T, Matte CHF, Raimann PE, Hutz MH (2008) Y-STR analysis in Brazilian and South Amerindian populations. Am J Hum Biol 20(3):359–363. https://doi.org/10.1002/ajhb.20702
Barrot C, Sánchez C, Xifró A, Ortega M, Mas J, Huguet E, Gené M (2007) Data for Y-chromosome haplotypes in Fang and Bubi populations from Bioko (Equatorial Guinea). Forensic Sci Int 168(1):e10–e12. https://doi.org/10.1016/j.forsciint.2007.01.010
Jobling MA, Pandya A, Tyler-Smith C (1997) The Y chromosome in forensic analysis and paternity testing. Int J Legal Med 110(3):118–124. https://doi.org/10.1007/s004140050050
Grattapaglia D, Kalupniek S, Guimarães CS, Ribeiro MA, Diener PS, Soares CN (2005) Y-chromosome STR haplotype diversity in Brazilian populations. Forensic Sci Int 149(1):99–107. https://doi.org/10.1016/j.forsciint.2004.06.003
Hammer MF, Karafet TM, Park H, Omoto K, Harihara S, Stoneking M, Horai S (2005) Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J Hum Genet 51(1):47–58. https://doi.org/10.1007/s10038-005-0322-0
Gusmão L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR, Schneider PM (2005) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Int J Legal Med 120(4):191–200. https://doi.org/10.1007/s00414-005-0026-1
Felsenstein J (2009) PHYLIP (phylogeny inference package) version 3.695. Department of Genome Sciences, University ofWashington, Seattle
Sun H, Yang X, Ha F, Zhang Z (2013) Genetic polymorphism of 17 Y-STR loci in Han Chinese living in Lanzhou. J Hua Zhong Univ Sci Technol [Medical Sciences] 33(6):902–904. https://doi.org/10.1007/s11596-013-1219-3
Zhu BF, Zhang YD, Liu WJ, Meng HT, YuanGL LZ, Xu P (2014) Genetic diversity and haplotype structure of 24 Y-chromosomal STR in Chinese Hui ethnic group and its genetic relationships with other populations. ELECTROPHORESIS 35(14):1993–2000. https://doi.org/10.1002/elps.201300574
Fu X, Fu Y, Liu Y, Guo J, Liu Y, Guo Y, Zha L (2016) Genetic polymorphisms of 26 Y-STR loci in the Mongolian minority from Horqin district, China. Int J Legal Med 130(4):941–946. https://doi.org/10.1007/s00414-016-1387-3
Jiang W, Gong Z, Rong H, Guan H, Zhang T, Zhao Y, Fu X, Zha L, Jin C, Ding Y (2016) Population genetics of 26 Y-STR loci for the Han ethnic in Hunan province, China. Int J Legal Med 131(1):115–117. https://doi.org/10.1007/s00414-016-1411-7
Xie M, Song F, Li J, Lang M, Luo H, Wang Z, Wu J, Li C, Tian C, Wang W, Ma H, Song Z, Fan Y, Hou Y (2019) Genetic substructure and forensic characteristics of Chinese Hui populations using 157 Y-SNPs and 27 Y-STRs. Forensic Sci Int: Genet 41:11–18. https://doi.org/10.1016/j.fsigen.2019.03.022
Liu Y, Wen S, Guo L, Bai R, Shi M, Li X (2018) Haplotype data of 27 Y-STRs analyzed in the Hui and Tujia ethnic minorities from China. Forensic Sci Int: Genet 35:e7–e9. https://doi.org/10.1016/j.fsigen.2018.04.006
Zhu B, Shen C, Qian G, Shi R, Dang Y, Zhu J, Huang P, Xu Y, Zhao Q, Ma J, Liu Y (2006) Genetic polymorphisms for 11 Y-STRs haplotypes of Chinese Yi ethnic minority group. Forensic SciInt 158(2–3):229–233. https://doi.org/10.1016/j.forsciint.2005.05.031
Luo H, Song F, Zhang L, Hou Y (2015) Genetic polymorphism of 23 Y-STR loci in the Zhuang minority population in Guangxi of China. Int J Legal Med 129(4):737–738. https://doi.org/10.1007/s00414-015-1175-5