A tale of two clades: monkeypox viruses

Alcami, 1992, A soluble receptor for interleukin-1 beta encoded by vaccinia virus: a novel mechanism of virus modulation of the host response to infection, Cell, 71, 153, 10.1016/0092-8674(92)90274-G

Alcami, 1996, A mechanism for the inhibition of fever by a virus, Proc Natl Acad Sci U S A, 93, 11029, 10.1073/pnas.93.20.11029

Ali, 1994, The SPI-1 gene of rabbitpox virus determines host range and is required for hemorrhagic pock formation, Virology, 202, 305, 10.1006/viro.1994.1347

Altschul, 1997, Gapped blast and psi-blast: a new generation of protein database search programs, Nucleic Acids Res, 25, 3389, 10.1093/nar/25.17.3389

Barry, 1997, The myxoma virus M-T4 gene encodes a novel RDEL-containing protein that is retained within the endoplasmic reticulum and is important for the productive infection of lymphocytes, Virology, 239, 360, 10.1006/viro.1997.8894

Beaud, 1997, Preferential virosomal location of underphosphorylated H5R protein synthesized in vaccinia virus-infected cells, J Gen Virol, 78, 3297, 10.1099/0022-1317-78-12-3297

Besemer, 2001, GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions, Nucleic Acids Res, 29, 2607, 10.1093/nar/29.12.2607

Black, 1998, Characterization of the interactions among vaccinia virus transcription factors G2R, A18R, and H5R, Virology, 245, 313, 10.1006/viro.1998.9166

Bray, 2004, MAVID: constrained ancestral alignment of multiple sequences, Genome Res, 14, 693, 10.1101/gr.1960404

Breman, 1980, Human monkeypox, 1970–79, Bull W H O, 58, 165

Brooks, 1995, A rabbitpox virus serpin gene controls host range by inhibiting apoptosis in restrictive cells, J Virol, 69, 7688, 10.1128/JVI.69.12.7688-7698.1995

Brown, 2000, Identification of sites phosphorylated by the vaccinia virus B1R kinase in viral protein H5R, BMC Biochem, 1, 2, 10.1186/1471-2091-1-2

2003, Update: multistate outbreak of monkeypox –, Morb Mortal Wkly Rep, 52, 642

Colinas, 1990, A DNA ligase gene in the Copenhagen strain of vaccinia virus is nonessential for viral replication and recombination, Virology, 179, 267, 10.1016/0042-6822(90)90295-3

Damon, 2003, Human Monkeypox in the United States, 2003, Presented at 41st Annual Meeting of the Infectious Disease Society of America, 10, 2003

Delcher, 1999, Improved microbial gene identification with GLIMMER, Nucleic Acids Res, 27, 4636, 10.1093/nar/27.23.4636

Downie, 1950, Viraemia in smallpox, Lancet, 2, 513, 10.1016/S0140-6736(50)91496-6

Ehlers, 2002, Poxvirus Orthologous Clusters (POCs), Bioinformatics, 18, 1544, 10.1093/bioinformatics/18.11.1544

Esposito, 1985, Orthopoxvirus DNA: a comparison of restriction profiles and maps, Virology, 143, 230, 10.1016/0042-6822(85)90111-4

Ewing, 1998, Base-calling of automated sequencer traces using phred, II. Error probabilities. Genome Res, 8, 186, 10.1101/gr.8.3.186

Ewing, 1998, Base-calling of automated sequencer traces using phred, I. Accuracy assessment. Genome Res, 8, 175

Fine, 1988, The transmission potential of monkeypox virus in human populations, Int J Epidemiol, 17, 643, 10.1093/ije/17.3.643

Foster, 1972, 10 other authors, Bull W H O, 46, 569

Frischknecht, 1999, Actin-based motility of vaccinia virus mimics receptor tyrosine kinase signalling, Nature, 401, 926, 10.1038/44860

Gonzalez, 1996, Virus and rodent coevolution: arenaviruses, hantaviruses and muridae, a global view, In New Dimensions in Parasitology, 617

Gordon, 2001, Automated finishing with autofinish, Genome Res, 11, 614, 10.1101/gr.171401

Higgins, 1988, clustal: a package for performing multiple sequence alignment on a microcomputer, Gene, 73, 237, 10.1016/0378-1119(88)90330-7

Hnatiuk, 1999, Role of the C-terminal RDEL motif of the myxoma virus M-T4 protein in terms of apoptosis regulation and viral pathogenesis, Virology, 263, 290, 10.1006/viro.1999.9946

Isaacs, 1992, Vaccinia virus complement-control protein prevents antibody-dependent complement-enhanced neutralization of infectivity and contributes to virulence, Proc Natl Acad Sci U S A, 89, 628, 10.1073/pnas.89.2.628

Isaacs, 2003, Restoration of complement-enhanced neutralization of vaccinia virus virions by novel monoclonal antibodies raised against the vaccinia virus complement control protein, J Virol, 77, 8256, 10.1128/JVI.77.15.8256-8262.2003

Jezek, 1988, Human monkeypox, In Monographs in Virology, vol 14, 1

Kerr, 1989, Vaccinia virus encodes a polypeptide with DNA ligase activity, Nucleic Acids Res, 17, 9039, 10.1093/nar/17.22.9039

Kettle, 1995, Vaccinia virus serpins B13R (SPI-2) and B22R (SPI-1) encode Mr 38·5 and 40K, intracellular polypeptides that do not affect virus virulence in a murine intranasal model, Virology, 206, 136, 10.1016/S0042-6822(95)80028-X

Kotwal, 1989, Vaccinia virus encodes two proteins that are structurally related to members of the plasma serine protease inhibitor superfamily, J Virol, 63, 600, 10.1128/JVI.63.2.600-606.1989

Kovacs, 1996, The vaccinia virus H5R gene encodes late gene transcription factor 4: purification, cloning, and overexpression, J Virol, 70, 6796, 10.1128/JVI.70.10.6796-6802.1996

Ladnyj, 1972, A human infection caused by monkeypox virus in Basankusu Territory, Democratic Republic of the Congo, Bull W H O, 46, 593

Learned, 2005, Republic of Congo outbreak, J Trop Med

Legrand, 2004, Induction of potent humoral and cell-mediated immune responses by attenuated vaccinia virus vectors with deleted serpin genes, J Virol, 78, 2770, 10.1128/JVI.78.6.2770-2779.2004

Lourie, 1972, Human infection with monkeypox virus: laboratory investigation of six cases in West Africa, Bull W H O, 46, 633

Macen, 1996, Differential inhibition of the Fas- and granule-mediated cytolysis pathways by the orthopoxvirus cytokine response modifier A/SPI-2 and SPI-1 protein, Proc Natl Acad Sci U S A, 93, 9108, 10.1073/pnas.93.17.9108

Mackett, 1979, Conservation and variation in orthopoxvirus genome structure, J Gen Virol, 45, 683, 10.1099/0022-1317-45-3-683

Meyer, 1997, Gene for A-type inclusion body protein is useful for a polymerase chain reaction assay to differentiate orthopoxviruses, J Virol Methods, 64, 217, 10.1016/S0166-0934(96)02155-6

Miller, 1997, The cowpox virus-encoded homolog of the vaccinia virus complement control protein is an inflammation modulatory protein, Virology, 229, 126, 10.1006/viro.1996.8396

Moon, 1999, SPI-1-dependent host range of rabbitpox virus and complex formation with cathepsin G is associated with serpin motifs, J Virol, 73, 8999, 10.1128/JVI.73.11.8999-9010.1999

Murcia-Nicolas, 1999, Identification by mass spectroscopy of three major early proteins associated with virosomes in vaccinia virus-infected cells, Virus Res, 59, 1, 10.1016/S0168-1702(98)00114-2

Nei, 1990, A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data, Genetics, 125, 873, 10.1093/genetics/125.4.873

Oguiura, 1993, Detection of a protein encoded by the vaccinia virus C7L open reading frame and study of its effect on virus multiplication in different cell lines, J Gen Virol, 74, 1409, 10.1099/0022-1317-74-7-1409

Parkinson, 1994, Vaccinia virus gene A36R encodes a M r 43-50 K protein on the surface of extracellular enveloped virus, Virology, 204, 376, 10.1006/viro.1994.1542

Perkus, 1990, Vaccinia virus host range genes, Virology, 179, 276, 10.1016/0042-6822(90)90296-4

Peters, 2003, Comments on route of inoculation

Plyusnin, 2001, Virus evolution and genetic diversity of hantaviruses and their rodent hosts, Curr Top Microbiol Immunol, 256, 47

Price, 2002, The vaccinia virus B9R protein is a 6 kDa intracellular protein that is non-essential for virus replication and virulence, J Gen Virol, 83, 873, 10.1099/0022-1317-83-4-873

Reed, 2004, The detection of monkeypox in humans in the Western Hemisphere, N Engl J Med, 350, 342, 10.1056/NEJMoa032299

Ronquist, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180

Rosengard, 2002, Variola virus immune evasion design: expression of a highly efficient inhibitor of human complement, Proc Natl Acad Sci U S A, 99, 8808, 10.1073/pnas.112220499

Rozas, 2003, DnaSP, DNA polymorphism analyses by the coalescent and other methods, Bioinformatics, 19, 2496, 10.1093/bioinformatics/btg359

Sanderson, 1998, Roles of vaccinia virus EEV-specific proteins in intracellular actin tail formation and low pH-induced cell–cell fusion, J Gen Virol, 79, 1415, 10.1099/0022-1317-79-6-1415

Senkevich, 1993, Nucleotide sequence of Xho I O fragment of ectromelia virus DNA reveals significant differences from vaccinia virus, Virus Res, 30, 73, 10.1016/0168-1702(93)90017-H

Shchelkunov, 1998, The genomic sequence analysis of the left and right species-specific terminal region of a cowpox virus strain reveals unique sequences and a cluster of intact ORFs for immunomodulatory and host range proteins, Virology, 243, 432, 10.1006/viro.1998.9039

Shchelkunov, 2002, Analysis of the monkeypox virus genome, Virology, 297, 172, 10.1006/viro.2002.1446

Shisler, 1999, Vaccinia virus serpin-1 deletion mutant exhibits a host range defect characterized by low levels of intermediate and late mRNAs, Virology, 262, 298, 10.1006/viro.1999.9884

Smith, 1991, Two vaccinia virus proteins structurally related to the interleukin-1 receptor and the immunoglobulin superfamily, J Gen Virol, 72, 511, 10.1099/0022-1317-72-3-511

Smith, 1989a, Transcriptional mapping and nucleotide sequence of a vaccinia virus gene encoding a polypeptide with extensive homology to DNA ligases, Nucleic Acids Res, 17, 9051, 10.1093/nar/17.22.9051

Smith, 1989b, Vaccinia virus encodes a family of genes with homology to serine proteinase inhibitors, J Gen Virol, 70, 2333, 10.1099/0022-1317-70-9-2333

Smith, 2000, Conserved surface-exposed K/R-X-K/R motifs and net positive charge on poxvirus complement control proteins serve as putative heparin binding sites and contribute to inhibition of molecular interactions with human endothelial cells: a novel mechanism for evasion of host defense, J Virol, 74, 5659, 10.1128/JVI.74.12.5659-5666.2000

Snyder, 2004, Protection against lethal vaccinia virus challenge in HLA-A2 transgenic mice by immunization with a single CD8+ T-cell peptide epitope of vaccinia and variola viruses, J Virol, 78, 7052, 10.1128/JVI.78.13.7052-7060.2004

Spriggs, 1992, Vaccinia and cowpox viruses encode a novel secreted interleukin-1-binding protein, Cell, 71, 145, 10.1016/0092-8674(92)90273-F

Swofford, 2002, paup* Phylogenetic Analysis Using Parsimony (*and Other Methods), Version, 4

Thompson, 1993, The effects of serpin gene mutations on the distinctive pathobiology of cowpox and rabbitpox virus following intranasal inoculation of Balb/c mice, Virology, 197, 328, 10.1006/viro.1993.1594

Ward, 2003, Mapping and functional analysis of interaction sites within the cytoplasmic domains of the vaccinia virus A33R and A36R envelope proteins, J Virol, 77, 4113, 10.1128/JVI.77.7.4113-4126.2003

Wolffe, 1998, Role for the vaccinia virus A36R outer envelope protein in the formation of virus-tipped actin-containing microvilli and cell-to-cell virus spread, Virology, 244, 20, 10.1006/viro.1998.9103

Yeh, 2000, The vaccinia virus A9L gene encodes a membrane protein required for an early step in virion morphogenesis, J Virol, 74, 9701, 10.1128/JVI.74.20.9701-9711.2000