Yeast Carbon Catabolite Repression

Microbiology and Molecular Biology Reviews - Tập 62 Số 2 - Trang 334-361 - 1998
Juana M. Gancedo1
1Instituto de Investigaciones Biomédicas, Unidad de Bioquı́mica y Genética de Levaduras, CSIC, 28029 Madrid, Spain

Tóm tắt

SUMMARY Glucose and related sugars repress the transcription of genes encoding enzymes required for the utilization of alternative carbon sources; some of these genes are also repressed by other sugars such as galactose, and the process is known as catabolite repression. The different sugars produce signals which modify the conformation of certain proteins that, in turn, directly or through a regulatory cascade affect the expression of the genes subject to catabolite repression. These genes are not all controlled by a single set of regulatory proteins, but there are different circuits of repression for different groups of genes. However, the protein kinase Snf1/Cat1 is shared by the various circuits and is therefore a central element in the regulatory process. Snf1 is not operative in the presence of glucose, and preliminary evidence suggests that Snf1 is in a dephosphorylated state under these conditions. However, the enzymes that phosphorylate and dephosphorylate Snf1 have not been identified, and it is not known how the presence of glucose may affect their activity. What has been established is that Snf1 remains active in mutants lacking either the proteins Grr1/Cat80 or Hxk2 or the Glc7 complex, which functions as a protein phosphatase. One of the main roles of Snf1 is to relieve repression by the Mig1 complex, but it is also required for the operation of transcription factors such as Adr1 and possibly other factors that are still unidentified. Although our knowledge of catabolite repression is still very incomplete, it is possible in certain cases to propose a partial model of the way in which the different elements involved in catabolite repression may be integrated.

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Tài liệu tham khảo

10.1128/jb.111.2.308-315.1972

10.1007/BF00277347

10.1007/BF00382091

10.1093/genetics/145.3.615

10.1093/nar/23.21.4421

10.1016/S0021-9258(17)39970-2

10.1074/jbc.270.33.19337

10.1093/nar/23.14.2685

10.1111/j.1432-1033.1996.00736.x

10.1128/mcb.8.5.2125-2131.1988

10.1016/0092-8674(92)90100-Q

10.1128/MCB.17.7.3640

10.1007/BF00309531

10.1038/328443a0

10.1128/mcb.8.5.1868-1876.1988

10.1002/yea.320090710

10.1111/j.1574-6976.1997.tb00346.x

10.1007/BF00292085

Borralho L. M. Malamud D. R. Panek A. D. Tenan M. N. Oliveira D. E. Mattoon J. R. Parallel changes in catabolite repression of haem biosynthesis and cytochromes in repression-resistant mutants of Saccharomyces cerevisiae.J. Gen. Microbiol.135198912171227

10.1099/13500872-142-3-459

10.1002/j.1460-2075.1986.tb04253.x

10.1002/j.1460-2075.1993.tb06221.x

10.1074/jbc.271.16.9298

10.1007/BF00334386

10.1128/jb.177.23.6836-6843.1995

10.1128/jb.177.5.1380-1382.1995

10.1093/nar/26.4.1002

10.1016/0005-2736(85)90128-2

10.1242/jcs.105.4.1095

10.1128/MCB.16.7.3308

10.1073/pnas.91.5.1950

10.1101/gad.10.17.2131

10.1074/jbc.271.9.5237

10.1093/emboj/16.3.555

10.1093/genetics/136.2.485

10.1016/0022-2836(89)90007-7

10.1016/S0021-9258(19)78143-5

10.1016/0092-8674(82)90384-1

Carlson M. Ludin K. Jiang R. Glucose-regulated interaction of a regulatory subunit of protein phosphatase 1 with the Snf1 protein kinase EMBO-FEBS Workshop. 1997 27Protein phosphatases and protein dephosphorylation.

10.1093/genetics/107.1.19

10.1093/genetics/98.1.25

10.1007/s004380050536

10.1016/0014-5793(95)00909-S

10.1007/s004380050469

10.1126/science.3526554

10.1128/mcb.9.11.5034-5044.1989

10.1128/mcb.9.11.5045-5054.1989

10.1073/pnas.85.7.2130

10.1091/mbc.6.9.1125

10.1002/j.1460-2075.1996.tb00366.x

10.1007/BF00376740

10.1128/mcb.6.11.3891-3899.1986

10.1128/mcb.13.2.831-840.1993

10.1128/mcb.14.6.3842-3852.1994

10.1016/0092-8674(89)90244-4

10.1074/jbc.271.50.32359

10.1038/350313a0

10.1007/BF02428119

10.1007/BF00330840

10.1007/BF00333107

10.1128/mcb.14.1.629-640.1994

10.1007/BF00351495

10.1101/gad.8.12.1400

Coshigano P. W. Miller S. M. Magasanik B. Physiological and genetical analysis of the carbon regulation of the NAD-dependent glutamate dehydrogenase of Saccharomyces cerevisiae.Mol. Cell. Biol.11199144554465

10.1126/science.8016655

10.1093/nar/21.18.4378

10.1007/BF00284206

10.1016/S0021-9258(17)40702-2

10.1016/0014-5793(95)00172-6

10.1242/jcs.109.7.1919

10.1128/jb.178.7.1842-1849.1996

10.1016/0014-5793(95)01368-7

de Mesquita J. F. O. Zaragoza and J. M. Gancedo. Functional analysis of upstream activating elements in the promoter of the FBP1 gene from Saccharomyces cerevisiae . Curr. Genet. in press.

10.1093/genetics/108.4.833

10.1007/BF00267461

10.1128/mcb.12.4.1507-1514.1992

10.1093/genetics/124.2.283

10.1126/science.278.5338.680

10.1091/mbc.8.8.1603

10.1016/S0079-6603(08)61018-1

10.1111/j.1432-1033.1996.00633.x

10.1128/mcb.13.7.4391-4399.1993

10.1128/MCB.17.3.1450

10.1093/nar/25.18.3657

10.1002/yea.320080203

10.1093/genetics/143.3.1137

10.1007/BF00313072

10.1128/mcb.11.11.5701-5709.1991

10.1128/mcb.14.7.4522-4531.1994

10.1128/MCB.15.7.3487

10.1101/gad.10.10.1247

10.1099/00221287-138-2-347

10.1111/j.1432-1033.1993.tb17927.x

10.1128/MCB.15.6.3405

10.1128/mcb.8.10.4552-4556.1988

Entian K.-D. Glucose repression: a complex regulatory system in yeast.Microbiol. Sci.31986366371

10.1128/jb.158.1.29-35.1984

Entian K.-D. Schüller H.-J. Glucose repression (carbon catabolite repression) in yeast Yeast sugar metabolism. Zimmermann F. K. Entian K.-D. 1997 409 434 Technomic Lancaster Pa

Entian K.-D. Schüller H.-J. Genetics of di- and trisaccharide utilization Yeast sugar metabolism. Zimmermann F. K. Entian K.-D. 1997 225 233 Technomic Lancaster Pa

10.1007/BF00267449

10.1128/jb.151.3.1123-1128.1982

10.1007/BF00272258

10.1111/j.1432-1033.1984.tb08174.x

10.1093/genetics/135.3.655

10.1093/genetics/136.4.1271

10.1111/j.1574-6968.1996.tb08009.x

10.1093/nar/18.23.6959

10.1128/mcb.13.7.3872-3881.1993

10.1093/genetics/132.3.639

10.1128/jb.156.1.301-307.1983

10.1016/S0021-9258(18)54353-2

10.1007/BF00283428

10.1016/0378-1119(93)90513-3

10.1128/mcb.10.9.4757-4769.1990

10.1093/genetics/130.2.295

10.1093/genetics/130.2.295

10.1101/gad.3.8.1166

10.1146/annurev.cb.05.110189.001101

10.1128/mcb.12.2.576-588.1992

10.1074/jbc.272.11.7122

10.1128/MCB.16.6.2922

10.1111/j.1432-1033.1980.tb04767.x

10.1128/jb.176.24.7423-7429.1994

10.1128/jb.107.2.401-405.1971

Gancedo C. Serrano R. Energy-yielding metabolism The Yeasts Rose A. H. Harrison J. S. 3 1989 205 259 Academic Press, Ltd. London, United Kingdom

10.1016/0006-291X(65)90944-7

10.1111/j.1432-1033.1992.tb16928.x

Gancedo J. M. Gancedo C. Catabolite repression mutants in yeast.FEMS Microbiol. Rev.321986179187

Gancedo J. M. Gancedo C. Gluconeogenesis and catabolite inactivation Yeast sugar metabolism. Zimmermann F. K. Entian K.-D. 1997 359 377 Technomic Lancaster Pa

10.1074/jbc.271.15.8675

10.1128/jb.174.21.6992-6996.1992

10.1128/mcb.14.3.2100-2112.1994

10.1016/0092-8674(85)90336-8

Goffrini P. Ficarelli A. Donnini C. Lodi T. Puglisi P. P. Ferrero I. FOG1 and FOG2 genes, required for the transcriptional activation of glucose-repressible genes of Kluyveromyces lactis, are homologous to GAL83 and SNF1 of Saccharomyces cerevisiae.Curr. Genet.291996316326

10.1016/0304-4165(69)90032-4

10.1101/gad.11.13.1640

10.1073/pnas.88.19.8597

10.1016/0092-8674(84)90243-5

10.1074/jbc.272.1.48

10.1128/mcb.8.2.655-663.1988

10.1111/j.1432-1033.1997.00259.x

10.1038/320283a0

10.1074/jbc.271.44.27879

10.1074/jbc.270.45.27186

10.1128/MCB.15.4.1915

10.1101/gad.9.8.897

Herrero P. Fernández R. Moreno F. The hexokinase isoenzyme PII of Saccharomyces cerevisiae is a protein kinase.J. Gen. Microbiol.135198912091216

10.1016/0092-8674(90)90746-2

10.1101/gad.6.12a.2288

10.1128/mcb.10.10.5510-5520.1990

10.1093/genetics/124.4.807

10.1101/gad.5.4.561

10.1093/genetics/143.4.1555

10.1007/BF00310888

10.1016/S0968-0004(76)80018-7

10.1128/MCB.15.3.1203

10.1128/MCB.17.6.3220

10.1007/BF00309785

10.1083/jcb.136.4.803

10.1128/mcb.14.3.1972-1978.1994

10.1093/genetics/130.1.71

Igual J. C. Navarro B. Respiration and low cAMP-dependent protein kinase activity are required for high-level expression of the peroxisomal thiolase gene in Saccharomyces cerevisiae.Mol. Gen. Genet.2521996446455

10.1101/gad.10.24.3105

10.1128/MCB.17.4.2099

10.1128/mcb.12.10.4503-4514.1992

10.1128/mr.51.4.458-476.1987

10.1038/328353a0

Johnston M. Carlson M. Regulation of carbon and phosphate utilization The molecular and cellular biology of the yeast Saccharomyces Jones E. W. Pringle J. R. Broach J. R. 2. Gene expression 1992 193 281 Cold Spring Harbor Laboratory Cold Spring Harbor, N.Y

10.1128/mcb.14.6.3834-3841.1994

10.1128/MCB.17.1.69

10.1016/0092-8674(92)90146-4

10.1128/jb.174.1.222-232.1992

10.1007/BF00419988

10.1016/0092-8674(94)90221-6

10.1101/gad.10.8.905

10.1038/368466a0

10.1101/gad.8.23.2857

10.1002/j.1460-2075.1995.tb07313.x

10.1016/0378-1119(95)00289-I

10.1046/j.1365-2958.1997.5611937.x

10.1021/bi00167a019

10.1007/s002030050385

10.1073/pnas.92.9.4006

10.1038/383269a0

10.1128/mcb.12.5.1924-1931.1992

Lafuente M. J. and C. Gancedo. Unpublished data.

10.1111/j.1574-6968.1993.tb05869.x

10.1073/pnas.93.16.8419

10.1007/BF02046409

10.1073/pnas.89.13.5922

10.1128/mcb.4.2.260-267.1984

10.1128/MCB.17.8.4622

10.1093/nar/22.4.597

10.1128/MCB.16.5.1921

10.1007/BF00351724

10.1093/emboj/16.18.5629

10.1073/pnas.92.24.10864

10.1016/S0076-6879(96)73017-3

10.1091/mbc.7.12.1953

10.1038/374193a0

Lindley C. O. Zaragoza and J. M. Gancedo. Unpublished data.

10.1016/0003-9861(77)90544-6

10.1099/13500872-141-9-2201

10.1096/fasebj.9.9.7601342

10.1128/mcb.12.7.2941-2948.1992

Ludin K. and M. Carlson. 1997. Personal communication.

10.1128/mcb.14.3.1979-1985.1994

10.1074/jbc.271.20.12068

10.1128/MCB.16.9.4790

10.1016/0003-9861(68)90487-6

10.1002/prot.340050305

10.1128/mcb.9.12.5643-5649.1989

10.1016/0092-8674(87)90670-2

10.1073/pnas.87.20.7814

Magasanik B. Regulation of nitrogen utilization The molecular and cellular biology of the yeast Saccharomyces Jones E. W. Pringle J. R. Broach J. R. 2. Gene expression 1992 283 317 Cold Spring Harbor Laboratory Cold Spring Harbor, N.Y

10.1073/pnas.87.14.5378

10.1074/jbc.272.37.23201

10.1074/jbc.271.6.2995

10.1128/MCB.16.6.3197

10.1038/356408a0

10.1093/genetics/128.3.505

10.1002/j.1460-2075.1996.tb00576.x

10.1128/MCB.16.5.2091

10.1007/BF00292708

10.1002/j.1460-2075.1994.tb06718.x

10.1128/jb.141.2.508-527.1980

10.1128/mcb.1.2.83-93.1981

10.1128/jb.150.1.277-285.1982

10.1128/jb.156.2.898-900.1983

10.1128/jb.153.3.1405-1414.1983

10.1016/S0021-9258(19)68160-3

10.1111/j.1432-1033.1982.tb06915.x

McCann A. K. Hilberg F. Kenworthy P. Barnett J. A. An unusual hexose-ATP-kinase with two catabolite sites and a role in carbon catabolite repression in the yeast Schwanniomyces occidentalis.J. Gen. Microbiol.1331987381389

10.1101/gad.9.1.47

Mechler K. Galactose metabolism in Saccharomyces cerevisiae : a paradigm of eukaryotic gene regulation Yeast sugar metabolism. Zimmermann F. K. Entian K.-D. 1997 235 269 Technomic Lancaster Pa

10.1016/0014-5793(92)81379-Z

10.1111/j.1432-1033.1994.00473.x

10.1016/0014-5793(91)81112-L

10.1128/jb.153.1.574-578.1983

10.1128/mcb.11.12.6229-6247.1991

10.1016/S0021-9258(17)41951-X

10.1007/BF00279755

10.1016/0006-291X(81)90899-8

10.1128/MCB.16.1.442

10.1128/jb.177.15.4517-4519.1995

10.1101/gad.12.1.45

10.1101/gad.3.8.1157

10.1111/j.1365-2958.1991.tb02136.x

10.1002/j.1460-2075.1991.tb04901.x

10.1093/nar/20.20.5271

10.1002/j.1460-2075.1990.tb07479.x

10.1093/genetics/108.4.845

10.1093/genetics/115.2.247

10.1093/genetics/112.4.741

10.1128/mcb.6.11.3569-3574.1986

10.1016/0378-1119(94)00684-K

10.1007/BF00428892

10.1111/j.1432-1033.1991.tb16187.x

10.1007/BF00352437

10.1093/nar/22.24.5279

10.1126/science.8266095

10.1016/0092-8674(89)90338-3

10.1016/0092-8674(87)90582-4

10.1128/mcb.11.2.611-619.1991

10.1101/gad.4.10.1714

10.1128/MCB.16.3.753

10.1046/j.1432-1327.1998.2520162.x

Özcan S. J. Dover and M. Johnston. Personal communication.

10.1073/pnas.93.22.12428

10.1128/jb.175.17.5520-5528.1993

10.1128/MCB.15.3.1564

10.1128/MCB.16.10.5536

10.1128/MCB.16.11.6419

10.1002/(SICI)1097-0061(199702)13:2<127::AID-YEA68>3.0.CO;2-#

10.1016/S0014-5793(97)01269-6

10.1007/BF00324660

10.1016/S0021-9258(18)77429-2

10.1111/j.1432-1033.1996.0181q.x

10.1073/pnas.91.8.2905

10.1016/0092-8674(92)90192-F

10.1016/S0968-0004(00)88990-2

10.1128/mcb.5.12.3410-3416.1985

10.1128/mcb.13.10.5981-5989.1993

10.1042/bj0970284

10.1007/BF00288610

10.1002/j.1460-2075.1995.tb00302.x

10.1038/379844a0

10.1093/nar/24.12.2331

10.1128/MCB.17.5.2502

10.1016/S0014-5793(98)00289-0

10.1128/MCB.16.6.2545

10.1074/jbc.272.17.11193

10.1128/MCB.16.6.2865

10.1111/j.1432-1033.1997.00324.x

10.1007/s004380050512

10.1128/mcb.9.6.2695-2705.1989

10.1128/mcb.7.2.780-786.1987

10.1093/genetics/147.2.451

Rodriguez C. and J. M. Gancedo. Unpublished data.

10.1016/S0168-9525(00)88980-5

10.1111/j.1432-1033.1991.tb16149.x

10.1016/0014-5793(88)81030-5

10.1093/genetics/94.4.871

10.1002/j.1460-2075.1996.tb00655.x

10.1038/379655a0

10.1111/j.1574-6968.1996.tb08206.x

10.1128/MCB.16.9.4879

10.1016/S0968-0004(00)89041-6

10.1093/nar/20.23.6227

10.1093/genetics/119.3.499

10.1128/mcb.10.8.4130-4138.1990

10.1074/jbc.272.9.5571

10.1093/nar/14.19.7767

10.1128/jb.178.15.4721-4723.1996

10.1128/mcb.4.12.2750-2757.1984

10.1128/mcb.6.7.2324-2333.1986

10.1016/0304-4165(87)90104-8

10.1007/BF00312621

10.1128/mcb.14.6.3613-3622.1994

10.1038/369283a0

10.1074/jbc.270.44.26446

10.1128/jb.173.6.2045-2052.1991

Schulte F. Ciriacy M. HTR1/MTH1 encodes a repressor for HXT genes.Yeast11Spec. Issue1995S239

10.1128/mcb.7.10.3637-3645.1987

10.1128/mcb.10.9.4744-4756.1990

10.1128/MCB.16.7.3651

10.1093/genetics/147.2.557

10.1128/MCB.17.3.1160

10.1128/MCB.16.2.669

10.1016/0092-8674(90)90745-Z

10.1128/mcb.11.2.699-704.1991

10.1002/yea.320080407

10.1007/BF00290529

10.1007/BF00314440

10.1128/MCB.16.1.115

10.1128/jb.129.3.1335-1342.1977

10.1007/BF00311208

10.1242/jcs.109.7.1927

10.1002/j.1460-2075.1993.tb05782.x

10.1016/S0092-8674(00)80970-8

10.1128/mcb.14.2.896-905.1994

10.1128/mcb.14.5.3446-3458.1994

10.1128/mcb.8.11.4991-4999.1988

10.1128/MCB.16.5.2504

10.1038/357698a0

10.1038/374088a0

10.1038/379658a0

10.1093/genetics/132.2.325

10.1006/bbrc.1998.8406

10.1073/pnas.87.11.4098

10.1016/S0968-0004(00)88938-0

10.1016/0092-8674(93)90362-T

10.1093/genetics/129.3.697

10.1093/nar/23.16.3174

10.1016/S0021-9258(18)83532-3

10.1128/MCB.15.8.4240

10.1073/pnas.92.8.3132

10.1016/0378-1119(88)90316-2

10.1111/j.1365-2958.1992.tb00832.x

10.1128/jb.166.1.313-318.1986

10.1128/mcb.14.10.6789-6796.1994

10.1002/j.1460-2075.1995.tb00282.x

10.1093/genetics/135.1.17

10.1038/369758a0

10.1101/gad.9.7.821

10.1111/j.1432-1033.1997.00748.x

10.1128/mcb.12.4.1663-1673.1992

10.1093/genetics/129.3.675

10.1093/genetics/137.1.49

10.1093/genetics/136.4.1279

10.1016/0006-291X(74)90643-3

10.1002/j.1460-2075.1990.tb07509.x

10.1128/MCB.16.12.6707

10.1016/S0021-9258(18)88978-5

10.1002/yea.320030204

10.1128/MCB.16.5.1978

10.1128/mcb.12.12.5394-5405.1992

10.1074/jbc.270.21.12832

Vincent O. O. Zaragoza and J. M. Gancedo. Unpublished data.

10.1111/j.1432-1033.1990.tb15585.x

10.1016/S0021-9258(18)45730-4

10.1128/jb.178.9.2593-2597.1996

10.1093/genetics/142.1.51

10.1074/jbc.272.7.4613

Wedlock D. N. Thornton R. J. A hexokinase associated with catabolite repression in Pachysolen tannophilus.J. Gen. Microbiol.135198920132018

10.1111/j.1432-1033.1997.t01-1-00248.x

10.1101/SQB.1988.053.01.074

10.1128/mcb.10.12.6500-6511.1990

10.1128/mcb.11.6.3307-3316.1991

10.1016/S0092-8674(00)80978-2

10.1016/S0960-9822(96)00747-6

10.1016/0168-9525(92)90300-S

10.1074/jbc.271.17.10282

10.1016/S0021-9258(17)32198-1

10.1128/mcb.7.3.1111-1121.1987

10.1128/mcb.10.3.1297-1300.1990

10.1002/j.1460-2075.1993.tb06153.x

10.1073/pnas.91.8.3009

10.1126/science.1496382

10.1002/j.1460-2075.1994.tb06933.x

10.1038/382319a0

10.1073/pnas.94.5.1721

10.1002/yea.320110304

10.1111/j.1365-2958.1996.tb02514.x

10.1128/mcb.9.1.34-42.1989

10.1093/nar/21.1.69

Zaragoza O. C. Rodriguez and C. Gancedo. Unpublished data.

10.1128/mcb.13.12.7566-7576.1993

10.1126/science.272.5268.1662

10.1101/gad.8.17.2110

10.1093/genetics/136.3.813

10.1007/BF00265579

10.1007/BF00446918

10.1128/jb.135.1.39-44.1978

10.1073/pnas.76.8.3627