Microsatellite and DNA-barcode regions typing combined with High Resolution Melting (HRM) analysis for food forensic uses: A case study on lentils (Lens culinaris)

Food Research International - Tập 46 - Trang 141-147 - 2012
Irene Bosmali1, Ioannis Ganopoulos2,3, Panagiotis Madesis3, Athanasios Tsaftaris2,3
1Department of Food Technology, Technological Educational Institution (T.E.I.) of Larissa (Karditsa Annex), Karditsa, Greece
2Department of Genetics and Plant Breeding, School of Agriculture, Aristotle University of Thessaloniki, Thessaloniki 54 124, Greece
3Institute of Agrobiotechnology, CERTH, 6th km Charilaou-Thermis Road, Thermi, Thessaloniki 57001, Greece

Tài liệu tham khảo

Babayeva, 2009, Diversity analysis of Central Asia and Caucasian lentil (Lens culinaris; Medik.) germplasm using SSR fingerprinting, Genetic Resources and Crop Evolution, 56, 293, 10.1007/s10722-009-9414-6 Ganopoulos, 2011, Adulterations in Basmati rice detected quantitatively by combined use of microsatellite and fragrance typing with High Resolution Melting (HRM) analysis, Food Chemistry, 129, 652, 10.1016/j.foodchem.2011.04.109 Ganopoulos, 2011, Microsatellite high resolution melting (SSR-HRM) analysis for authenticity testing of protected designation of origin (PDO) sweet cherry products, Food Control, 22, 532, 10.1016/j.foodcont.2010.09.040 Ganopoulos, I., Madesis, P., Darzentas, N., Argiriou, A., & Tsaftaris, A. (in press). Barcode high resolution melting (bar-HRM) analysis for detection and quantification of PDO “Fava Santorinis” (Lathyrus clymenum) adulterants. Food Chemistry. Germer, 1999, Single-tube genotyping without oligonucleotide probes, Genome Research, 9, 72, 10.1101/gr.9.1.72 Hewson, 2009, Rapid detection and non-subjective characterisation of infectious bronchitis virus isolates using high-resolution melt curve analysis and a mathematical model, Archives of Virology, 154, 649, 10.1007/s00705-009-0357-1 Hollingsworth, 2009, A DNA barcode for land plants, Proceedings of the National Academy of Sciences of the United States of America, 106, 12794, 10.1073/pnas.0905845106 Jaakola, 2010, Novel approaches based on DNA barcoding and high-resolution melting of amplicons for authenticity analyses of berry species, Food Chemistry, 123, 494, 10.1016/j.foodchem.2010.04.069 Kress, 2005, Use of DNA barcodes to identify flowering plants, Proceedings of the National Academy of Sciences of the United States of America, 102, 8369, 10.1073/pnas.0503123102 Li, 2010, A high-resolution melting analysis for genotyping urogenital Chlamydia trachomatis, Diagnostic Microbiology and Infectious Disease, 10.1016/j.diagmicrobio.2010.07.013 Luykx, 2008, An overview of analytical methods for determining the geographical origin of food products, Food Chemistry, 107, 897, 10.1016/j.foodchem.2007.09.038 Mader, 2008, A strategy to setup codominant microsatellite analysis for high-resolution-melting-curve-analysis (HRM), BMC Genetics, 9, 69, 10.1186/1471-2156-9-69 Mader, 2011, Quantitative high-resolution melting analysis for detecting adulterations, Analytical Biochemistry, 409, 153, 10.1016/j.ab.2010.10.009 Monis, 2005, Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis, Analytical Biochemistry, 340, 24, 10.1016/j.ab.2005.01.046 Morrison, 2003 Pandian, 2002, A sensitive and specific PCR-based discrimination of split red vetch and lentil seeds, Plant Molecular Biology Reporter, 20, 177, 10.1007/BF02799432 Pasqualone, 2010, Durum wheat cultivar traceability in PDO Altamura bread by analysis of DNA microsatellites, European Food Research and Technology, 230, 723, 10.1007/s00217-009-1210-1 Piergiovanni, 2005, Simple and rapid method for the differentiation of Lens culinaris Medik. from false lentil species, Journal of Agricultural and Food Chemistry, 53, 6593, 10.1021/jf0505426 Primrose, 2011, Food forensics: methods for determining the authenticity of foodstuffs, Trends in Food Science & Technology, 21, 582, 10.1016/j.tifs.2010.09.006 Reed, 2004, Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis, Clinical Chemistry, 50, 1748, 10.1373/clinchem.2003.029751 Reid, 2006, Recent technological advances for the determination of food authenticity, Trends in Food Science & Technology, 17, 344, 10.1016/j.tifs.2006.01.006 Sonnante, 2001, Assessment of genetic variation in a collection of lentil using molecular tools, Euphytica, 120, 301, 10.1023/A:1017568824786 Sonnante, 2007, The major Italian landraces of lentil (Lens culinaris Medik.): Their molecular diversity and possible origin, Genetic Resources and Crop Evolution, 54, 1023, 10.1007/s10722-006-9153-x Urbano, 2007, 47 Varshney, 2007, Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys, Plant Science, 173, 638, 10.1016/j.plantsci.2007.08.010 Veteleinen, 2009 Wittwer, 2003, High-resolution genotyping by amplicon melting analysis using LCGreen, Clinical Chemistry, 49, 853, 10.1373/49.6.853 Wu, 2008, High resolution melting analysis of almond SNPs derived from ESTs, Theoretical and Applied Genetics, 118, 1, 10.1007/s00122-008-0870-8