Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments
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M. Toussaint D. Bonjean The Scladina I-4A Juvenile Neandertal Andenne Belgium: Palaeoanthropology and Context (Université de Liège 2014).
J.-J. Hublin “Climatic changes paleogeography and the evolution of the Neandertals ” in Neandertals and Modern Humans in Western Asia T. Akazawa K. Aoki O. Bar-Yosef Eds. (Springer 1998) pp. 295–310.
G. Van Rossum F. L. Drake Jr. “Python tutorial” (Centrum voor Wiskunde en Informatica 1995).
R Core Team “R: A language and environment for statistical computing” (R Foundation for Statistical Computing 2019); https://www.R-project.org/.
H. Wickham “ggplot2: Elegant graphics for data analysis” (Tidyverse 2016); https://ggplot2.tidyverse.org.
C. O. Wilke “cowplot: Streamlined plot theme and plot annotations for “ggplot2” (R package version 1.1.1 2019); https://CRAN.R-project.org/package=cowplot
E. Neuwirth “RColorBrewer: ColorBrewer palettes” ( R package 1.1-2 2014); https://CRAN.R-project.org/package=RColorBrewer.
B. Vernot “bvernot/branch_estim: v0.1-beta” (Zenodo 2021); https://zenodo.org/record/4534664.
B. Vernot “bvernot/make_sed_capture_targets: v0.1-beta” (Zenodo 2021); https://zenodo.org/record/4534734.
F. Romagne “mpieva/nuclear_sediment_pipeline: metagen_utils v1.21” (Zenodo 2021); https://zenodo.org/record/4468181.
J. Visagie “mpieva/biohazard-tools: Biohazard Tools v0.2” (Zenodo 2021); https://zenodo.org/record/4616582.
K. Prüfer “Alignments of modern and archaic human genomes with primate outgroup genomes in tab-separated-values format” (EDMOND 2021); https://dx.doi.org/10.17617/3.5h10.17617/3.5h.
A. Aranburu V. Martínez-Pillado F. García J. L. Arsuaga A. Alcázar de Velasco A. Bonmatí N. García A. Gracia A. Gómez J. Lira C. Lorenzo I. Martínez A. I. Ortega A. Pablos A. Pantoja R. M. Quam N. Sala in Avances de la Geomorfología en España 2010–2012. XII Reunión Nacional de Geomorfología Santander A. González-Díez G. Fernández-Maroto M. W. Doughty J. Remondo V. M. Bruschi J. Bonachea T. R. Díaz de Terán Eds. (Sociedad Española de Geomorfología 2012) pp. 397–400; https://geomorfologia.es/publicaciones-socios/avances-de-la-geomorfolog%C3%ADa-en-espa%C3%B1a-2010-2012).
J. M. Parés A. I. Ortega A. Benito-Calvo A. Aranburu J. L. Arsuaga J. M. Bermúdez de Castro E. Carbonell “Paleomagnetic constraints on the Atapuerca karst development (N Spain) ” in Caves and Karst Across Time J. M. Feinberg Y. Gao E. C. Alexander Jr. Eds. (Geological Society of America 2016) pp. 285–300.
K. Tamura, M. Nei, Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10, 512–526 (1993). 8336541
A. Smit R. Hubley P. Green “RepeatMasker Open-4.0” (Institute for Systems Biology 2013); http://www.repeatmasker.org.
B. M. Peter 100 000 years of gene flow between Neandertals and Denisovans in the Altai mountains. bioRxiv 990523 [Preprint]. 15 March 2020. .10.1101/2020.03.13.990523