Comparative Analysis of Protein-Protein Interactions in Cancer-Associated Genes

Platzer, 2007, Characterization of protein-interaction networks in tumors, BMC Bioinformatics, 8, 224, 10.1186/1471-2105-8-224 Jonsson, 2006, Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis, BMC Bioinformatics, 7, 2, 10.1186/1471-2105-7-2 Stender, 2007, Estrogen-regulated gene networks in human breast cancer cells: involvement of E2F1 in the regulation of cell proliferation, Mol. Endocrinol., 21, 2112, 10.1210/me.2006-0474 Wachi, 2005, Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues, Bioinformatics, 21, 4205, 10.1093/bioinformatics/bti688 Rhodes, 2005, Integrative analysis of the cancer transcriptome, Nat. Genet., 37, S31, 10.1038/ng1570 Mani, 2008, A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas, Mol. Syst. Biol., 4, 169, 10.1038/msb.2008.2 Martín, 2008, Biological pathways contributing to organ-specific phenotype of brain metastatic cells, J. Proteome Res., 7, 908, 10.1021/pr070426d Chen, 2006, A systems biology case study of ovarian cancer drug resistance, Comput. Syst. Bioinformatics Conf., 389, 10.1142/9781860947575_0047 Ergün, 2007, A network biology approach to prostate cancer, Mol. Syst. Biol., 3, 82, 10.1038/msb4100125 Stein, 1998, Prognostic markers in bladder cancer: a contemporary review of the literature, J. Urol., 160, 645, 10.1016/S0022-5347(01)62747-2 Sun, 2000, Inhibition of tumor angiogenesis by synthetic receptor tyrosine kinase inhibitors, Drug Discov. Today, 5, 344, 10.1016/S1359-6446(00)01534-8 Lappöhn, 1989, Inhibin as a marker for granulosa-cell tumors, N. Engl. J. Med., 321, 790, 10.1056/NEJM198909213211204 Franchini, 2006, Hemostatic changes in thyroid diseases: haemostasis and thrombosis, Hematology, 11, 203, 10.1080/10245330600667591 Boer, 2001, Identification and classification of differentially expressed genes in renal cell carcinoma by expression profiling on a global human 31,500-element cDNA array, Genome Res., 11, 1861, 10.1101/gr.184501 Sun, 1981, A study of some mitochondrial and peroxisomal enzymes in human colonic adenocarcinoma, Lab. Invest., 44, 13 Washo-Stultz, 2002, Role of mitochondrial complexes I and II, reactive oxygen species and arachidonic acid metabolism in deoxycholate-induced apoptosis, Cancer Lett., 177, 129, 10.1016/S0304-3835(01)00786-8 Yang, 2006, Bacteria, inflammation, and colon cancer, World J. Gastroenterol., 12, 6741, 10.3748/wjg.v12.i42.6741 Gallaher, 1999, The effect of synbiotics on colon carcinogenesis in rats, J. Nutr., 129, 1483S, 10.1093/jn/129.7.1483S Gibbons, 2005, Histone modifying and chromatin remodelling enzymes in cancer and dysplastic syndromes, Hum. Mol. Genet., 14, R85, 10.1093/hmg/ddi106 Lu, 2006, EG-1 interacts with c-Src and activates its signaling pathway, Int. J. Oncol., 29, 1013 Nierodzik, 2006, Thrombin induces tumor growth, metastasis, and angiogenesis: evidence for a thrombin-regulated dormant tumor phenotype, Cancer Cell, 10, 355, 10.1016/j.ccr.2006.10.002 Badawi, 2002, Influence of cigarette smoking on prostaglandin synthesis and cyclooxygenase-2 gene expression in human urinary bladder cancer, Cancer Invest., 20, 651, 10.1081/CNV-120002490 Franzon, 1999, Molecular cloning of a novel human PAPS synthetase which is differentially expressed in metastatic and non-metastatic colon carcinoma cells, Int. J. Biochem. Cell Biol., 31, 613, 10.1016/S1357-2725(98)00155-1 Bhola, 2008, Crosstalk between G-protein-coupled receptors and epidermal growth factor receptor in cancer, Front. Biosci., 13, 1857, 10.2741/2805 Steinbach, 1996, The influence of cytokines on the adhesion of renal cancer cells to endothelium, J. Urol., 155, 743, 10.1016/S0022-5347(01)66513-3 Su, 2006, Knockdown of contactin-1 expression suppresses invasion and metastasis of lung adenocarcinoma, Cancer Res., 66, 2553, 10.1158/0008-5472.CAN-05-2645 Srisomsap, 2002, Detection of cathepsin B up-regulation in neoplastic thyroid tissues by proteomic analysis, Proteomics, 2, 706, 10.1002/1615-9861(200206)2:6<706::AID-PROT706>3.0.CO;2-E Asou, 2003, The role of a Runt domain transcription factor AML1/RUNX1 in leukemogenesis and its clinical implications, Crit. Rev. Oncol. Hematol., 45, 129, 10.1016/S1040-8428(02)00003-3 Kogai, 2006, Enhancement of sodium/iodide symporter expression in thyroid and breast cancer, Endocr. Relat. Cancer, 13, 797, 10.1677/erc.1.01143 Inoue, 2000, Interleukin 8 expression regulates tumorigenicity and metastasis in human bladder cancer, Cancer Res., 15, 2290 Eisenhardt, 2005, Association study of the G-protein beta3 subunit C825T polymorphism with disease progression in patients with bladder cancer, World J. Urol., 23, 279, 10.1007/s00345-005-0006-6 Matthews, 2007, AP-1 a target for cancer prevention, Curr. Cancer Drug Targets, 7, 317, 10.2174/156800907780809723 Ouyang, 2008, Activator protein-1 transcription factors are associated with progression and recurrence of prostate cancer, Cancer Res., 68, 2132, 10.1158/0008-5472.CAN-07-6055 Horwitz, 1996, Nuclear receptor coactivators and corepressors, Mol. Endocrinol., 10, 1167 Ao, 2008, Involvement of estrogen-related receptors in transcriptional response to hypoxia and growth of solid tumors, Proc. Natl. Acad. Sci. USA, 105, 7821, 10.1073/pnas.0711677105 Nakayama, 2002, Hypoxia-inducible factor 1 alpha (HIF-1 alpha) gene expression in human ovarian carcinoma, Cancer Lett., 176, 215, 10.1016/S0304-3835(01)00762-5 Chan, 2008, A role for TAZ in migration, invasion, and tumorigenesis of breast cancer cells, Cancer Res., 68, 2592, 10.1158/0008-5472.CAN-07-2696 Boorjian, 2005, Retinoid receptor mRNA expression profiles in human bladder cancer specimens, Int. J. Oncol., 26, 1041 Hemstreet, 2001, Biomarker risk assessment and bladder cancer detection in a cohort exposed to benzidine, J. Natl. Cancer Inst., 93, 427, 10.1093/jnci/93.6.427 Mönig, 2007, Clinical significance of nm23 gene expression in gastric cancer, Anticancer Res., 27, 3029 Barrett, 2007, NCBI GEO: mining tens of millions of expression profiles—database and tools update, Nucleic Acids Res., 35, D760, 10.1093/nar/gkl887 Brown, 2005, Online predicted human interaction database, Bioinformatics, 21, 2076, 10.1093/bioinformatics/bti273 Wang, 2007, A new method to measure the semantic similarity of GO terms, Bioinformatics, 23, 1274, 10.1093/bioinformatics/btm087