Characterisation of lactic acid bacteria in spontaneously fermented camel milk and selection of strains for fermentation of camel milk

Abdelgadir, 2008, A traditional Sudanese fermented camel's milk product, Gariss, as a habitat of Streptococcus infantarius subsp. infantarius, International Journal of Food Microbiology, 127, 215, 10.1016/j.ijfoodmicro.2008.07.008 Akhmetsadykova, 2015, Lactic acid bacteria biodiversity in raw and fermented camel milk, African Journal of Food Science and Technology, 6, 84 Al Atrouni, 2016, Reservoirs of non-baumannii Acinetobacter species, Frontiers in Microbiology, 7, 10.3389/fmicb.2016.00049 Alfouzan, 2014, A case of multiple splenic abscesses due to Enterococcus hirae, JMM Case Reports, 1, 2014, 10.1099/jmmcr.0.001214 Attia, 2001, Dromedary milk lactic acid fermentation: Microbiological and rheological characteristics, Journal of Industrial Microbiology and Biotechnology, 26, 263, 10.1038/sj.jim.7000111 Berhe, 2015, Comparison of the acidification activities of commercial starter cultures on camel and cow milk Bourdichon, 2012, Food fermentations: Microorganisms with technological beneficial use, International Journal of Food Microbiology, 154, 87, 10.1016/j.ijfoodmicro.2011.12.030 Caplice, 1999, Food fermentations: Role of microorganisms in food production and preservation, International Journal of Food Microbiology, 50, 131, 10.1016/S0168-1605(99)00082-3 Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nature Methods, 7, 335, 10.1038/nmeth.f.303 De Man, 1960, A medium for the cultivation of lactobacilli, Journal of Applied Bacteriology, 23, 130, 10.1111/j.1365-2672.1960.tb00188.x DeSantis, 2006, Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB, Applied and Environmental Microbiology, 72, 5069, 10.1128/AEM.03006-05 Dicpinigaitis, 2015, Enterococcus hirae bacteremia associated with acute pancreatitis and septic shock, Case Reports in Infectious Diseases, 2015, 1, 10.1155/2015/123852 Drici, 2010, Atypical citrate-fermenting Lactococcus lactis strains isolated from dromedary's milk, Journal of Applied Microbiology, 108, 647, 10.1111/j.1365-2672.2009.04459.x Edgar, 2013, UPARSE: Highly accurate OTU sequences from microbial amplicon reads, Nature Methods, 10, 996, 10.1038/nmeth.2604 EFSA, 2015, Statement on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA. 2: Suitability of taxonomic units notified to EFSA until March 2015, EFSA Journal, 13, 4131 El Agamy, 1992, Antibacterial and antiviral activity of camel milk protective proteins, Journal of Dairy Research, 59, 169, 10.1017/S0022029900030417 FAO, 2013 Farah, 2004 Herody, 2010, Legal status of microbial food cultures in the European Union: An overview, European Food and Feed Law Review, 5, 258 Imhoff, 2005, Enterobacteriales, 587 Janda, 2007, 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: Pluses, perils, and pitfalls, Journal of Clinical Microbiology, 45, 2761, 10.1128/JCM.01228-07 Jans, 2012, Lactic acid bacteria diversity of African raw and fermented camel milk products reveals a highly competitive, potentially health-threatening predominant microflora, LWT – Food Science and Technology, 47, 371, 10.1016/j.lwt.2012.01.034 Jans, 2016, Phylogenetic, epidemiological and functional analyses of the Streptococcus bovis/Streptococcus equinus complex through an overarching MLST scheme, BMC Microbiology, 16, 10.1186/s12866-016-0735-2 Jans, 2014, Genomics, evolution, and molecular epidemiology of the Streptococcus bovis/Streptococcus equinus complex (SBSEC), Infection, Genetics and Evolution, 33, 419, 10.1016/j.meegid.2014.09.017 Jin, 2013, Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis, BMC Microbiology, 13, 10.1186/1471-2180-13-141 Johnson, 2008, NCBI BLAST: A better web interface, Nucleic Acids Research, 36, W5, 10.1093/nar/gkn201 Khedid, 2009, Characterization of lactic acid bacteria isolated from the one humped camel milk produced in Morocco, Microbiological Research, 164, 81, 10.1016/j.micres.2006.10.008 Klaenhammer, 1988, Bacteriocins of lactic acid bacteria, Biochimie, 70, 337, 10.1016/0300-9084(88)90206-4 Laursen, 2016, Infant gut microbiota development is driven by transition to family foods independent of maternal obesity, American Society for Microbiology, 1, 1 Lore, 2005, Enumeration and identification of microflora in suusac, a Kenyan traditional fermented camel milk product, LWT – Food Science and Technology, 38, 125, 10.1016/j.lwt.2004.05.008 Mahlen, 2011, Serratia infections: From military experiments to current practice, Clinical Microbiology Reviews, 24, 755, 10.1128/CMR.00017-11 Pedersen, 1992, Natamycin as a fungicide in agar media, Applied and Environmental Microbiology, 58, 1064, 10.1128/AEM.58.3.1064-1066.1992 Pfeiler, 2007, The genomics of lactic acid bacteria, Trends in Microbiology, 15, 546, 10.1016/j.tim.2007.09.010 Saito, 2007, A novel agar medium to detect hydrogen peroxide-producing bacteria based on the prussian blue-forming reaction, Microbiology and Immunology, 51, 889, 10.1111/j.1348-0421.2007.tb03971.x Schmidt, 2014, Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale, PLoS Computational Biology, 10, e1003594, 10.1371/journal.pcbi.1003594 Švec, 2014, The genus Enterococcus, 175 Terzaghi, 1975, Improved medium for lactic streptococci and their bacteriophages, Applied Microbiology, 29, 807, 10.1128/AEM.29.6.807-813.1975 Toit, 2014, The genus Streptococcus, 457 Wang, 2007, Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Applied and Environmental Microbiology, 73, 5261, 10.1128/AEM.00062-07