Translational Regulation in Nutrigenomics
Tài liệu tham khảo
Lander, 2011, Initial impact of the sequencing of the human genome, Nature, 470, 187, 10.1038/nature09792
Shendure, 2008, Next-generation DNA sequencing, Nat Biotechnol, 26, 1135, 10.1038/nbt1486
Grayson, 2010, Nutrigenomics, Nature, 468, S1, 10.1038/468S1a
Fenech, 2011, Nutrigenetics and nutrigenomics: viewpoints on the current status and applications in nutrition research and practice, J Nutrigenet Nutrigenomics, 4, 69
Ebner, 2011, Whole cell proteome regulation by microRNAs captured in a pulsed SILAC mass spectrometry approach, Methods Mol Biol, 725, 315, 10.1007/978-1-61779-046-1_20
Sonenberg, 2009, Regulation of translation initiation in eukaryotes: mechanisms and biological targets, Cell, 136, 731, 10.1016/j.cell.2009.01.042
Spriggs, 2010, Translational regulation of gene expression during conditions of cell stress, Mol Cell, 40, 228, 10.1016/j.molcel.2010.09.028
Pisarev, 2007, Recycling of eukaryotic posttermination ribosomal complexes, Cell, 131, 286, 10.1016/j.cell.2007.08.041
Gross, 2003, Ribosome loading onto the mRNA cap is driven by conformational coupling between eIF4G and eIF4E, Cell, 115, 739, 10.1016/S0092-8674(03)00975-9
Schütz, 2008, Crystal structure of the yeast eIF4A-eIF4G complex: an RNA-helicase controlled by protein-protein interactions, Proc Natl Acad Sci U S A, 105, 9564, 10.1073/pnas.0800418105
Marintchev, 2009, Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation, Cell, 136, 447, 10.1016/j.cell.2009.01.014
Unbehaun, 2004, Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP, Genes Dev, 18, 3078, 10.1101/gad.1255704
Pestova, 2002, The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection, Genes Dev, 16, 2906, 10.1101/gad.1020902
Pestova, 2000, The joining of ribosomal subunits in eukaryotes requires eIF5B, Nature, 403, 332, 10.1038/35002118
Pause, 1994, Insulin-dependent stimulation of protein synthesis by phosphorylation of a regulator of 5'-cap function, Nature, 371, 762, 10.1038/371762a0
Cridge, 2010, Identifying eIF4E-binding protein translationally-controlled transcripts reveals links to mRNAs bound by specific PUF proteins, Nucleic Acids Res, 38, 8039, 10.1093/nar/gkq686
Sampath, 2008, A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation, Cell Stem Cell, 2, 448, 10.1016/j.stem.2008.03.013
Grech, 2008, Igbp1 is part of a positive feedback loop in stem cell factor-dependent, selective mRNA translation initiation inhibiting erythroid differentiation, Blood, 112, 2750, 10.1182/blood-2008-01-133140
Chen, 2011, Genome-wide analysis of translation reveals a critical role for deleted in azoospermia-like (Dazl) at the oocyte-to-zygote transition, Genes Dev, 25, 755, 10.1101/gad.2028911
Sonenberg, 2000
Thomas, 2007, Identification of mRNAs that continue to associate with polysomes during hypoxia, RNA, 13, 1116, 10.1261/rna.534807
Shenton, 2006, Global translational responses to oxidative stress impact upon multiple levels of protein synthesis, J Biol Chem, 281, 29011, 10.1074/jbc.M601545200
Gebauer, 2004, Molecular mechanisms of translational control, Nat Rev Mol Cell Biol, 5, 827, 10.1038/nrm1488
Donovan, 2010, Threading the needle: getting selenocysteine into proteins, Antioxid Redox Signal, 12, 881, 10.1089/ars.2009.2878
Hendrickson, 2009, Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA, PLoS Biol, 7, 10.1371/journal.pbio.1000238
Guo, 2010, Mammalian microRNAs predominantly act to decrease target mRNA levels, Nature, 466, 835, 10.1038/nature09267
Jackson, 2010, The mechanism of eukaryotic translation initiation and principles of its regulation, Nat Rev Mol Cell Biol, 11, 113, 10.1038/nrm2838
Mata, 2005, Post-transcriptional control of gene expression: a genome-wide perspective, Trends Biochem Sci, 30, 506, 10.1016/j.tibs.2005.07.005
Pradet-Balade, 2001, Translation control: bridging the gap between genomics and proteomics?, Trends Biochem Sci, 26, 225, 10.1016/S0968-0004(00)01776-X
Kudo, 2010, Translational control analysis by translationally active RNA capture/microarray analysis (TrIP-Chip), Nucleic Acids Res, 38, e104, 10.1093/nar/gkq024
Lackner, 2007, A network of multiple regulatory layers shapes gene expression in fission yeast, Mol Cell, 26, 145, 10.1016/j.molcel.2007.03.002
Doyle, 2008, Application of a translational profiling approach for the comparative analysis of CNS cell types, Cell, 135, 749, 10.1016/j.cell.2008.10.029
Ingolia, 2009, Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling, Science, 324, 218, 10.1126/science.1168978
Zoncu, 2011, mTOR: from growth signal integration to cancer, diabetes and ageing, Nat Rev Mol Cell Biol, 12, 21, 10.1038/nrm3025
Inoki, 2002, TSC2 is phosphorylated and inhibited by Akt and suppresses mTOR signalling, Nat Cell Biol, 4, 648, 10.1038/ncb839
Potter, 2002, Akt regulates growth by directly phosphorylating Tsc2, Nat Cell Biol, 4, 658, 10.1038/ncb840
Inoki, 2003, Rheb GTPase is a direct target of TSC2 GAP activity and regulates mTOR signaling, Genes Dev, 17, 1829, 10.1101/gad.1110003
Zhang, 2003, Rheb is a direct target of the tuberous sclerosis tumour suppressor proteins, Nat Cell Biol, 5, 578, 10.1038/ncb999
Saucedo, 2003, Rheb promotes cell growth as a component of the insulin/TOR signalling network, Nat Cell Biol, 5, 566, 10.1038/ncb996
Nicklin, 2009, Bidirectional transport of amino acids regulates mTOR and autophagy, Cell, 136, 521, 10.1016/j.cell.2008.11.044
Yan, 2010, PP2A T61 epsilon is an inhibitor of MAP4K3 in nutrient signaling to mTOR, Mol Cell, 37, 633, 10.1016/j.molcel.2010.01.031
Gulati, 2008, Amino acids activate mTOR complex 1 via Ca2+/CaM signaling to hVps34, Cell Metab, 7, 456, 10.1016/j.cmet.2008.03.002
Sancak, 2008, The Rag GTPases bind raptor and mediate amino acid signaling to mTORC1, Science, 320, 1496, 10.1126/science.1157535
Kim, 2008, Regulation of TORC1 by Rag GTPases in nutrient response, Nat Cell Biol, 10, 935, 10.1038/ncb1753
Sancak, 2010, Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids, Cell, 141, 290, 10.1016/j.cell.2010.02.024
Ma, 2009, Molecular mechanisms of mTOR-mediated translational control, Nat Rev Mol Cell Biol, 10, 307, 10.1038/nrm2672
Haghighat, 1995, Repression of cap-dependent translation by 4E-binding protein 1: competition with p220 for binding to eukaryotic initiation factor-4E, EMBO J, 14, 5701, 10.1002/j.1460-2075.1995.tb00257.x
Raught, 2004, Phosphorylation of eucaryotic translation initiation factor 4B Ser422 is modulated by S6 kinases, EMBO J, 23, 1761, 10.1038/sj.emboj.7600193
Sun, 2011, PI3K-mTORC1 attenuates stress response by inhibiting cap-independent Hsp70 translation, J Biol Chem, 286, 6791, 10.1074/jbc.M110.172882
Bilanges, 2007, Tuberous sclerosis complex proteins 1 and 2 control serum-dependent translation in a TOP-dependent and -independent manner, Mol Cell Biol, 27, 5746, 10.1128/MCB.02136-06
Kilberg, 2005, Nutritional control of gene expression: how mammalian cells respond to amino acid limitation, Annu Rev Nutr, 25, 59, 10.1146/annurev.nutr.24.012003.132145
Zhang, 2002, The GCN2 eIF2alpha kinase is required for adaptation to amino acid deprivation in mice, Mol Cell Biol, 22, 6681, 10.1128/MCB.22.19.6681-6688.2002
Staschke, 2010, Integration of general amino acid control and target of rapamycin (TOR) regulatory pathways in nitrogen assimilation in yeast, J Biol Chem, 285, 16893, 10.1074/jbc.M110.121947
Blais, 2004, Activating transcription factor 4 is translationally regulated by hypoxic stress, Mol Cell Biol, 24, 7469, 10.1128/MCB.24.17.7469-7482.2004
Vattem, 2004, Reinitiation involving upstream ORFs regulates ATF4 mRNA translation in mammalian cells, Proc Natl Acad Sci U S A, 101, 11269, 10.1073/pnas.0400541101
Bishop, 2010, Neural mechanisms of ageing and cognitive decline, Nature, 464, 529, 10.1038/nature08983
Sahin, 2010, Linking functional decline of telomeres, mitochondria and stem cells during ageing, Nature, 464, 520, 10.1038/nature08982
Kaeberlein, 2010, Lessons on longevity from budding yeast, Nature, 464, 513, 10.1038/nature08981
Kenyon, 2010, The genetics of ageing, Nature, 464, 504, 10.1038/nature08980
McCay, 1989, The effect of retarded growth upon the length of life span and upon the ultimate body size. 1935, Nutrition, 5, 155
Guarente, 2005, Calorie restriction-the SIR2 connection, Cell, 120, 473, 10.1016/j.cell.2005.01.029
Fontana, 2009, The scientific basis of caloric restriction leading to longer life, Curr Opin Gastroenterol, 25, 144, 10.1097/MOG.0b013e32831ef1ba
Vellai, 2003, Genetics: influence of TOR kinase on lifespan in C. elegans, Nature, 426, 620, 10.1038/426620a
Kapahi, 2004, Regulation of lifespan in Drosophila by modulation of genes in the TOR signaling pathway, Curr Biol, 14, 885, 10.1016/j.cub.2004.03.059
Kaeberlein, 2005, Regulation of yeast replicative life span by TOR and Sch9 in response to nutrients, Science, 310, 1193, 10.1126/science.1115535
Powers, 2006, Extension of chronological life span in yeast by decreased TOR pathway signaling, Genes Dev, 20, 174, 10.1101/gad.1381406
Harrison, 2009, Rapamycin fed late in life extends lifespan in genetically heterogeneous mice, Nature, 460, 392, 10.1038/nature08221
Hipkiss, 2006, Accumulation of altered proteins and ageing: causes and effects, Exp Gerontol, 41, 464, 10.1016/j.exger.2006.03.004
Hipkiss, 2007, On why decreasing protein synthesis can increase lifespan, Mech Ageing Dev, 128, 412, 10.1016/j.mad.2007.03.002
Pan, 2007, Inhibition of mRNA translation extends lifespan in Caenorhabditis elegans, Aging Cell, 6, 111, 10.1111/j.1474-9726.2006.00266.x
Hansen, 2007, Lifespan extension by conditions that inhibit translation in Caenorhabditis elegans, Aging Cell, 6, 95, 10.1111/j.1474-9726.2006.00267.x
Syntichaki, 2007, eIF4E function in somatic cells modulates ageing in Caenorhabditis elegans, Nature, 445, 922, 10.1038/nature05603
Ruggero, 2004, The translation factor eIF-4E promotes tumor formation and cooperates with c-Myc in lymphomagenesis, Nat Med, 10, 484, 10.1038/nm1042
Steffen, 2008, Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4, Cell, 133, 292, 10.1016/j.cell.2008.02.037
McColl, 2010, Insulin-like signaling determines survival during stress via posttranscriptional mechanisms in C. elegans, Cell Metab, 12, 260, 10.1016/j.cmet.2010.08.004
Zid, 2009, 4E-BP extends lifespan upon dietary restriction by enhancing mitochondrial activity in Drosophila, Cell, 139, 149, 10.1016/j.cell.2009.07.034
Rogers, 2011, Life span extension via eIF4G inhibition is mediated by posttranscriptional remodeling of stress response gene expression in C. elegans, Cell Metab, 14, 55, 10.1016/j.cmet.2011.05.010
Yuan, 2008, PI3K pathway alterations in cancer: variations on a theme, Oncogene, 27, 5497, 10.1038/onc.2008.245
Janes, 2010, Effective and selective targeting of leukemia cells using a TORC1/2 kinase inhibitor, Nat Med, 16, 205, 10.1038/nm.2091
Chapman, 2011, Initial genome sequencing and analysis of multiple myeloma, Nature, 471, 467, 10.1038/nature09837
Scheper, 2007, Translation matters: protein synthesis defects in inherited disease, Nat Rev Genet, 8, 711, 10.1038/nrg2142
Dürig, 2003, Expression of ribosomal and translation-associated genes is correlated with a favorable clinical course in chronic lymphocytic leukemia, Blood, 101, 2748, 10.1182/blood-2002-09-2683
Dowling, 2010, mTORC1-mediated cell proliferation, but not cell growth, controlled by the 4E-BPs, Science, 328, 1172, 10.1126/science.1187532
Petroulakis, 2009, p53-dependent translational control of senescence and transformation via 4E-BPs, Cancer Cell, 16, 439, 10.1016/j.ccr.2009.09.025
Larsson, 2006, Apoptosis resistance downstream of eIF4E: posttranscriptional activation of an anti-apoptotic transcript carrying a consensus hairpin structure, Nucleic Acids Res, 34, 4375, 10.1093/nar/gkl558
Hsieh, 2010, Genetic dissection of the oncogenic mTOR pathway reveals druggable addiction to translational control via 4EBP-eIF4E, Cancer Cell, 17, 249, 10.1016/j.ccr.2010.01.021
Wendel, 2004, Survival signalling by Akt and eIF4E in oncogenesis and cancer therapy, Nature, 428, 332, 10.1038/nature02369
Wendel, 2007, Dissecting eIF4E action in tumorigenesis, Genes Dev, 21, 3232, 10.1101/gad.1604407
She, 2010, 4E-BP1 is a key effector of the oncogenic activation of the AKT and ERK signaling pathways that integrates their function in tumors, Cancer Cell, 18, 39, 10.1016/j.ccr.2010.05.023
Graff, 2007, Therapeutic suppression of translation initiation factor eIF4E expression reduces tumor growth without toxicity, J Clin Invest, 117, 2638, 10.1172/JCI32044
Gandin, 2008, Eukaryotic initiation factor 6 is rate-limiting in translation, growth and transformation, Nature, 455, 684, 10.1038/nature07267
Hussey, 2011, Identification of an mRNP complex regulating tumorigenesis at the translational elongation step, Mol Cell, 41, 419, 10.1016/j.molcel.2011.02.003
Rosenwald, 1996, Upregulated expression of the genes encoding translation initiation factors eIF-4E and eIF-2alpha in transformed cells, Cancer Lett, 102, 113, 10.1016/0304-3835(96)04171-7
Blais, 2006, Perk-dependent translational regulation promotes tumor cell adaptation and angiogenesis in response to hypoxic stress, Mol Cell Biol, 26, 9517, 10.1128/MCB.01145-06
Donzé, 1995, Abrogation of translation initiation factor eIF-2 phosphorylation causes malignant transformation of NIH 3T3 cells, EMBO J, 14, 3828, 10.1002/j.1460-2075.1995.tb00052.x
Calkhoven, 2002, Translational control of gene expression and disease, Trends Mol Med, 8, 577, 10.1016/S1471-4914(02)02424-3
Rajasekhar, 2003, Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes, Mol Cell, 12, 889, 10.1016/S1097-2765(03)00395-2