Synthetic lethality: General principles, utility and detection using genetic screens in human cells

FEBS Letters - Tập 585 - Trang 1-6 - 2011
Sebastian M.B. Nijman1
1Research Center for Molecular Medicine of the Austrian Academy of Sciences (CeMM), 1090 Vienna, Austria

Tài liệu tham khảo

Bridges, 1922, The origin of variation, Amer Nat, 56, 51, 10.1086/279847 Dobzhansky, 1946, Genetics of natural populations. XIII. Recombination and variability in populations of Drosphila pseudoobscura, Genetics, 31, 269, 10.1093/genetics/31.3.269 Boone, 2007, Exploring genetic interactions and networks with yeast, Nat Rev Genet, 8, 437, 10.1038/nrg2085 Hartman, 2001, Principles for the buffering of genetic variation, Science, 291, 1001, 10.1126/science.291.5506.1001 Kaelin, 2005, The concept of synthetic lethality in the context of anticancer therapy, Nat Rev Cancer, 5, 689, 10.1038/nrc1691 Lehar, 2008, Combination chemical genetics, Nat Chem Biol, 4, 674, 10.1038/nchembio.120 Luo, 2009, Principles of cancer therapy: oncogene and non-oncogene addiction, Cell, 136, 823, 10.1016/j.cell.2009.02.024 Hillenmeyer, 2008, The chemical genomic portrait of yeast: uncovering a phenotype for all genes, Science, 320, 362, 10.1126/science.1150021 Dixon, 2009, Systematic mapping of genetic interaction networks, Annu Rev Genet, 43, 601, 10.1146/annurev.genet.39.073003.114751 Kaelin, 2009, Synthetic lethality: a framework for the development of wiser cancer therapeutics, Genome Med, 1, 99, 10.1186/gm99 Masel, 2009, Robustness: mechanisms and consequences, Trends Genet, 25, 395, 10.1016/j.tig.2009.07.005 Gibson, 2009, Decanalization and the origin of complex disease, Nat Rev Genet, 10, 134, 10.1038/nrg2502 Kirschner, 1998, Evolvability, Proc Natl Acad Sci U S A, 95, 8420, 10.1073/pnas.95.15.8420 Winzeler, 1999, Functional characterization of the S, Cerevisiae genome by gene deletion and parallel analysis. Science, 285, 901 Costanzo, 2010, The genetic landscape of a cell, Science, 327, 425, 10.1126/science.1180823 Whitehurst, 2007, Synthetic lethal screen identification of chemosensitizer loci in cancer cells, Nature, 446, 815, 10.1038/nature05697 Rutherford, 1998, Hsp90 as a capacitor for morphological evolution, Nature, 396, 336, 10.1038/24550 Lehner, 2006, Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways, Nat Genet, 38, 896, 10.1038/ng1844 Whitesell, 2005, HSP90 and the chaperoning of cancer, Nat Rev Cancer, 5, 761, 10.1038/nrc1716 Fiedler, 2009, Functional organization of the S. cerevisiae phosphorylation network, Cell, 136, 952, 10.1016/j.cell.2008.12.039 Lum, 2004, Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes, Cell, 116, 121, 10.1016/S0092-8674(03)01035-3 St Onge, 2007, Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions, Nat Genet, 39, 199, 10.1038/ng1948 Yu, 2008, Chemical-genetic profiling of imidazo[1, 2-a]pyridines and -pyrimidines reveals target pathways conserved between yeast and human cells, PLoS Genet, 4, e1000284, 10.1371/journal.pgen.1000284 Ericson, 2008, Off-target effects of psychoactive drugs revealed by genome-wide assays in yeast, PLoS Genet, 4, e1000151, 10.1371/journal.pgen.1000151 Guo, 2008, Identification of a small molecule with synthetic lethality for K-ras and protein kinase C iota, Cancer Res, 68, 7403, 10.1158/0008-5472.CAN-08-1449 Turcotte, 2008, A molecule targeting VHL-deficient renal cell carcinoma that induces autophagy, Cancer Cell, 14, 90, 10.1016/j.ccr.2008.06.004 Dolma, 2003, Identification of genotype-selective antitumor agents using synthetic lethal chemical screening in engineered human tumor cells, Cancer Cell, 3, 285, 10.1016/S1535-6108(03)00050-3 Turner, 2008, A synthetic lethal siRNA screen identifying genes mediating sensitivity to a PARP inhibitor, EMBO J, 27, 1368, 10.1038/emboj.2008.61 Zimmermann, 2007, Multi-target therapeutics: when the whole is greater than the sum of the parts, Drug Discov Today, 12, 34, 10.1016/j.drudis.2006.11.008 Hartwell, 1997, Integrating genetic approaches into the discovery of anticancer drugs, Science, 278, 1064, 10.1126/science.278.5340.1064 Weinstein, 2002, Cancer. Addiction to oncogenes–the Achilles heal of cancer, Science, 297, 63, 10.1126/science.1073096 Farmer, 2005, Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy, Nature, 434, 917, 10.1038/nature03445 Bryant, 2005, Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase, Nature, 434, 913, 10.1038/nature03443 Fong, 2009, Inhibition of poly(ADP-ribose) polymerase in tumors from BRCA mutation carriers, N Engl J Med, 361, 123, 10.1056/NEJMoa0900212 Fong, 2010, Poly(ADP)-ribose polymerase inhibition: frequent durable responses in BRCA carrier ovarian cancer correlating with platinum-free interval, J Clin Oncol, 28, 2512, 10.1200/JCO.2009.26.9589 Wiltshire, 2010, Sensitivity to poly(ADP-ribose) polymerase (PARP) inhibition identifies ubiquitin-specific peptidase 11 (USP11) as a regulator of DNA double-strand break repair, J Biol Chem, 285, 14565, 10.1074/jbc.M110.104745 Mendes-Pereira, 2009, Synthetic lethal targeting of PTEN mutant cells with PARP inhibitors, EMBO Mol Med, 1, 315, 10.1002/emmm.200900041 Orsburn, 2010, Differential requirement for H2AX and 53BP1 in organismal development and genome maintenance in the absence of poly(ADP)ribosyl polymerase 1, Mol Cell Biol, 30, 2341, 10.1128/MCB.00091-10 Sandhu, 2010, Poly(ADP-ribose) polymerase inhibitors in cancer treatment: a clinical perspective, Eur J Cancer, 46, 9, 10.1016/j.ejca.2009.10.021 Ashworth, 2008, A synthetic lethal therapeutic approach: poly(ADP) ribose polymerase inhibitors for the treatment of cancers deficient in DNA double-strand break repair, J Clin Oncol, 26, 3785, 10.1200/JCO.2008.16.0812 Iglehart, 2009, Synthetic lethality–a new direction in cancer-drug development, N Engl J Med, 361, 189, 10.1056/NEJMe0903044 Wong, 2004, Combining biological networks to predict genetic interactions, Proc Natl Acad Sci U S A, 101, 15682, 10.1073/pnas.0406614101 Roguev, 2008, Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast, Science, 322, 405, 10.1126/science.1162609 Dixon, 2008, Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes, Proc Natl Acad Sci U S A, 105, 16653, 10.1073/pnas.0806261105 Tarailo, 2007, Synthetic lethal interactions identify phenotypic “interologs” of the spindle assembly checkpoint components, Genetics, 177, 2525, 10.1534/genetics.107.080408 Tischler, 2008, Evolutionary plasticity of genetic interaction networks, Nat Genet, 40, 390, 10.1038/ng.114 Byrne, 2007, A global analysis of genetic interactions in Caenorhabditis elegans, J Biol, 6, 8, 10.1186/jbiol58 McManus, 2009, Specific synthetic lethal killing of RAD54B-deficient human colorectal cancer cells by FEN1 silencing, Proc Natl Acad Sci U S A, 106, 3276, 10.1073/pnas.0813414106 Conde-Pueyo, 2009, Human synthetic lethal inference as potential anti-cancer target gene detection, BMC Syst Biol, 3, 116, 10.1186/1752-0509-3-116 McLellan, 2009, Synthetic lethal genetic interactions that decrease somatic cell proliferation in Caenorhabditis elegans identify the alternative RFC CTF18 as a candidate cancer drug target, Mol Biol Cell, 20, 5306, 10.1091/mbc.e09-08-0699 Torrance, 2001, Use of isogenic human cancer cells for high-throughput screening and drug discovery, Nat Biotechnol, 19, 940, 10.1038/nbt1001-940 Shoemaker, 2006, The NCI60 human tumour cell line anticancer drug screen, Nat Rev Cancer, 6, 813, 10.1038/nrc1951 Ngo, 2006, A loss-of-function RNA interference screen for molecular targets in cancer, Nature, 441, 106, 10.1038/nature04687 Schlabach, 2008, Cancer proliferation gene discovery through functional genomics, Science, 319, 620, 10.1126/science.1149200 Silva, 2008, Profiling essential genes in human mammary cells by multiplex RNAi screening, Science, 319, 617, 10.1126/science.1149185 Luo, 2008, Highly parallel identification of essential genes in cancer cells, Proc Natl Acad Sci U S A, 105, 20380, 10.1073/pnas.0810485105 Scholl, 2009, Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells, Cell, 137, 821, 10.1016/j.cell.2009.03.017 Barbie, 2009, Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1, Nature, 462, 108, 10.1038/nature08460 Mayo, 1997, Requirement of NF-kappaB activation to suppress p53-independent apoptosis induced by oncogenic Ras, Science, 278, 1812, 10.1126/science.278.5344.1812 Chien, 2006, RalB GTPase-mediated activation of the IkappaB family kinase TBK1 couples innate immune signaling to tumor cell survival, Cell, 127, 157, 10.1016/j.cell.2006.08.034 Meylan, 2009, Requirement for NF-kappaB signalling in a mouse model of lung adenocarcinoma, Nature, 462, 104, 10.1038/nature08462 Luo, 2009, A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene, Cell, 137, 835, 10.1016/j.cell.2009.05.006 Wang, 2010, Critical role for transcriptional repressor Snail2 in transformation by oncogenic RAS in colorectal carcinoma cells, Oncogene, 29, 4658, 10.1038/onc.2010.218 Carette, 2009, Haploid genetic screens in human cells identify host factors used by pathogens, Science, 326, 1231, 10.1126/science.1178955