Molecular epidemiology of HIV: Tracking AIDS pandemic

Pediatrics International - Tập 46 Số 2 - Trang 236-244 - 2004
Yutaka Takebe1, Shigeru Kusagawa1, Kazushi Motomura1
1Laboratory of Molecular Virology and Epidemiology, AIDS Research Center, National Institute of Infectious Diseases, Toyama, Shinjuku-ku, Tokyo, Japan.

Tóm tắt

Abstract Background : Human immunodeficiency virus (HIV) and acquired immunodeficiency syndrome (AIDS) epidemic is a global threat to maternal and child health, especially in developing countries. It is estimated that 800 000 children are infected and 580 000 children die of AIDS‐related illnesses every year. Molecular epidemiology has been a useful tool in analyzing the origin of HIV and tracking the course of global HIV spread. This article provides an overview of recent advances in the field of molecular epidemiology of HIV across the world, and discuss the biological implications. Methods : Based on the near full‐length or partial nucleotide sequence information, the phylogeny and recombinant structure of HIV strains are analyzed. Using genotype classification of HIV as a molecular marker, the origin and the genesis of HIV epidemic are investigated. Results : The HIV‐1 group M, a major HIV group responsible for current AIDS pandemic, began its expansion in human population approximately 70 years ago and diversified rapidly over time, now comprising a number of different subtypes and circulating recombinant forms (CRF). Of note, recent studies revealed that new recombinant strains are arising continually, becoming a powerful force in the spread of HIV‐1 across the globe. Conclusion : Global dissemination of HIV is a dramatic and deadly example of recent genome emergence and expansion. Molecular epidemiological investigation is expected to provide information critical for prevention and future vaccine strategies.

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Tài liệu tham khảo

UNAIDS/WHO., 2002, AIDS epidemic update: December 2002

UNAIDS/WHO., 2001, AIDS epidemic update: December 2001

Anonymous., The Circulating Recombinant Forms (CRFs)

10.1126/science.288.5472.1789

10.2307/1542965

10.1126/science.288.5463.55d

10.1006/viro.1994.1640

Gurtler LG, 1994, A new subtype of human immunodeficiency virus type 1 (MVP‐5180) from Cameroon, J. Virol., 68, 1581, 10.1128/jvi.68.3.1581-1585.1994

10.1128/JVI.68.3.1586-1596.1994

Loussert‐Ajaka I, 1995, Variability of human immunodeficiency virus type 1 group O strains isolated from Cameroonian patients living in France, J. Virol., 69, 5640, 10.1128/jvi.69.9.5640-5649.1995

10.1038/2017

10.1006/viro.1998.9211

McCutchan FE, 2000, Understanding the genetic diversity of HIV‐1, AIDS, 14, S31

10.1128/JVI.73.1.152-160.1999

10.1089/08892220050195793

10.1097/00002030-200303070-00023

10.1097/00002030-200309260-00009

10.1097/00002030-200207050-00012

10.1128/JVI.77.1.685-695.2003

10.1097/00042560-200202010-00013

Novitsky VA, 1999, Molecular cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full‐length clones from Botswana, J. Virol., 73, 4427, 10.1128/JVI.73.5.4427-4432.1999

10.1097/00002030-200005050-00020

Ou CY, 1992, Wide distribution of two subtypes of HIV‐1 in Thailand, AIDS Res. Hum. Retroviruses, 8, 1471, 10.1089/aid.1992.8.1471

10.1016/0140-6736(93)91001-3

10.1056/NEJM199608013350510

10.1097/00002030-199508000-00004

Weniger BG, 1994, The molecular epidemiology of HIV in Asia, AIDS, 8, S13

10.1128/JVI.74.23.11367-11376.2000

10.1128/JVI.74.23.11286-11295.2000

10.1097/00002030-199814000-00023

10.1006/viro.1998.9505

10.1128/JVI.74.22.10498-10507.2000

10.1089/aid.1998.14.1379

10.1089/aid.1998.14.1099

10.1126/science.287.5453.607

10.1097/00002030-199704000-00013

10.1038/17130

10.1128/JVI.74.1.529-534.2000

De Leys R, 1990, Isolation and partial characterization of an unusual human immunodeficiency retrovirus from two persons of west‐central African origin, J. Virol., 64, 1207, 10.1128/jvi.64.3.1207-1216.1990

10.1016/S0140-6736(96)01036-7

10.1038/358495a0

10.1126/science.288.5472.1789

10.1097/00002030-199910010-00020

10.1086/315469

10.1086/314557

Neilson JR, 1999, Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya, J. Virol., 73, 4393, 10.1128/JVI.73.5.4393-4403.1999

Renjifo B, 2001, Differences in perinatal transmission among human immunodeficiency virus type 1 genotypes, J. Hum. Virol., 4, 16

10.1086/315185

10.1006/viro.2001.1059

10.1086/340130

10.1097/00002030-199905280-00005

10.1073/pnas.222366699

Descamps D, 1998, Naturally occurring decreased susceptibility of HIV‐1 subtype G to protease inhibitors, AIDS, 12, 1109

Apetrei C, 1998, Human immunodeficiency virus type 1 subtype F reverse transcriptase sequence and drug susceptibility, J. Virol., 72, 3534, 10.1128/JVI.72.5.3534-3538.1998

10.1097/00002030-200007280-00004

10.1097/00126334-200307010-00007

10.1073/pnas.93.12.6106

10.1056/NEJMoa020263

10.1172/JCI0214789

Peeters M, 2000, Compilation and Analysis of Nucleic Acid and Amino Acid Sequences, 54