Comparison of joint versus purebred genomic evaluation in the French multi-breed dairy goat population
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Tosser-Klopp G, Bardou P, Bouchez O, Cabau C, Crooijmans R, Dong Y, Donnadieu-Tonon C, Eggen A, Heuven HC, Jamli S: Design and characterization of a 52 K SNP chip for goats. PLoS One. 2014, 9: e86227-10.1371/journal.pone.0086227.
Danchin-Burge C: Bilan de variabilité génétique de 9 races de petits ruminants laitiers et à toison. 2011
Carillier C, Larroque H, Palhière I, Clément V, Rupp R, Robert-Granié C: A first step toward genomic selection in the multi-breed French dairy goat population. J Dairy Sci. 2013, 96: 7294-7305. 10.3168/jds.2013-6789.
Fritz S, Guillaume F, Croiseau P, Baur A, Hoze C, Dassonneville R, Boscher MY, Journeaux L, Boichard D, Ducrocq V: Mise en place de la sélection génomique dans les trois principales races françaises de bovins laitiers. Renc Rech Ruminants. 2010, 17: 455-458. [http://www.journees3r.fr/IMG/pdf/2010_15_05_Fritz.pdf],
Aguilar I, Misztal I, Johnson DL, Legarra A, Tsuruta S, Lawlor TJ: Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score. J Dairy Sci. 2010, 93: 743-752. 10.3168/jds.2009-2730.
Goddard M: Genomic selection: prediction of accuracy and maximisation of long term response. Genetica. 2009, 136: 245-257. 10.1007/s10709-008-9308-0.
Hayes BJ, Goddard M: Genome-wide association and genomic selection in animal breeding. Genome. 2010, 53: 876-883. 10.1139/G10-076.
Liu Z, Seefried FR, Reinhardt F, Rensing S, Thaller G, Reents R: Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction. Genet Sel Evol. 2011, 43: 9-10.1186/1297-9686-43-19.
Su G, Guldbrandtsen B, Gregersen VR, Lund MS: Preliminary investigation on reliability of genomic estimated breeding values in the Danish Holstein population. J Dairy Sci. 2010, 93: 1175-1183. 10.3168/jds.2009-2192.
Gao H, Christensen OF, Madsen P, Nielsen US, Zhang Y, Lund MS, Su G: Comparison on genomic predictions using GBLUP models and two single-step blending methods with different relationship matrices in the Nordic Holstein population. Genet Sel Evol. 2012, 44: 1-8. 10.1186/1297-9686-44-8.
Baloche G, Legarra A, Sallé G, Larroque H, Astruc J-M, Robert-Granié C, Barillet F: Assessment of accuracy of genomic prediction for French Lacaune dairy sheep. J Dairy Sci. 2013, 97: 1107-1116. 10.3168/jds.2013-7135.
Legarra A, Aguilar I, Misztal I: A relationship matrix including full pedigree and genomic information. J Dairy Sci. 2009, 92: 4656-4663. 10.3168/jds.2009-2061.
Babo D: Races ovines et caprines françaises. France Agricole Editions, Paris, France; 2000. [], [ http://books.google.fr/books?id=9OWWy8SJkwkC&printsec=frontcover&hl=fr#v=onepage&q&f=false ]
Bélichon S, Manfredi E, Piacère A: Genetic parameters of dairy traits in the Alpine and Saanen goat breeds. Genet Sel Evol. 1999, 31: 529-534. 10.1186/1297-9686-31-5-529.
Simeone R, Misztal I, Aguilar I, Vitezica ZG: Evaluation of a multi-line broiler chicken population using a single-step genomic evaluation procedure. J Anim Breed Genet. 2012, 129: 3-10. 10.1111/j.1439-0388.2011.00939.x.
Hayes BJ, Bowman PJ, Chamberlain AC, Verbyla K, Goddard ME: Accuracy of genomic breeding values in multi-breed dairy cattle populations. Genet Sel Evol. 2009, 41: 1-9. 10.1186/1297-9686-41-1.
Brøndum RF, Rius-Vilarrasa E, Strandén I, Su G, Guldbrandtsen B, Fikse WF, Lund MS: Reliabilities of genomic prediction using combined reference data of the Nordic Red dairy cattle populations. J Dairy Sci. 2011, 94: 4700-4707. 10.3168/jds.2010-3765.
Karoui S, Carabano MJ, Diaz C, Legarra A: Joint evaluation of French dairy cattle breeds using multiple-trait models. Genet Sel Evol. 2012, 44: 1-10. 10.1186/1297-9686-44-39.
Olson K, VanRaden P, Tooker M: Multibreed genomic evaluations using purebred Holsteins, Jerseys, and Brown Swiss. J Dairy Sci. 2012, 95: 5378-5383. 10.3168/jds.2011-5006.
Clément V, Boichard D, Piacere A, Barbat A, Manfredi E: Genetic evaluation of French goats for dairy and type traits. Proceedings of the 7th World Congress on Genetics Applied to Livestock Production: 19–23 August 2002; Montpellier. 2002, 4-
Clément V, Caillat H, Piacère A, Manfredi E, Robert-Granié C, Bouvier F, Rupp R: Vers la mise en place d'une sélection pour la résistance aux mammites chez les caprins. Renc Rech Ruminants. 2008, 15: 405-408. [http://www.journees3r.fr/IMG/pdf/2008_13_genetique_02_Clement.pdf],
Misztal I, Tsuruta S, Strabel T, Auvray B, Druet T, Lee DH: BLUPF90 and related programs (BGF90). In Proceedings of the 7 th World Congress on Genetics Applied to Livestock Production: 19–23 August 2002; Montpellier. 2002:2.,
VanRaden PM: Efficient methods to compute genomic predictions. J Dairy Sci. 2008, 91: 4414-4423. 10.3168/jds.2007-0980.
Klei B, Tsuruta S: Approximate variance for heritability estimates. [ http://nce.ads.uga.edu/html/projects/AI_SE.pdf ]
Maroteau C, Palhière I, Larroque H, Clément V, Tosser-Klopp G, Rupp R: QTL detection for traits of interest for the dairy goat industry. Proceedings of the 64th Annual Meeting of the European Federation of Animal Science (EAAP): 26–30 August 2013; Nantes. 2013
VanRaden PM, Van Tassell CP, Wiggans GR, Sonstegard TS, Schnabel RD, Taylor JF, Schenkel FS: Invited Review: Reliability of genomic predictions for North American Holstein bulls. J Dairy Sci. 2009, 92: 16-24. 10.3168/jds.2008-1514.
Misztal I, Tsuruta S, Aguilar I, Legarra A, VanRaden PM, Lawlor TJ: Methods to approximate reliabilities in single-step genomic evaluation. J Dairy Sci. 2013, 96: 647-654. 10.3168/jds.2012-5656.
Meyer K: Approximate accuracy of genetic evaluation under an animal model. Livest Prod Sci. 1989, 21: 87-100. 10.1016/0301-6226(89)90041-9.
Rupp R, Clément V, Piacere A, Robert-Granié C, Manfredi E: Genetic parameters for milk somatic cell score and relationship with production and udder type traits in dairy Alpine and Saanen primiparous goats. J Dairy Sci. 2011, 94: 3629-3634. 10.3168/jds.2010-3694.
Zhou L, Ding X, Zhang Q, Wang Y, Lund MS, Su G: Consistency of linkage disequilibrium between Chinese and Nordic Holsteins and genomic prediction for Chinese Holsteins using a joint reference population. Genet Sel Evol. 2013, 45: 7-10.1186/1297-9686-45-7.
Duchemin SI, Colombani C, Legarra A, Baloche G, Larroque H, Astruc JM, Barillet F, Robert-Granié C, Manfredi E: Genomic selection in the French Lacaune dairy sheep breed. J Dairy Sci. 2012, 95: 2723-2733. 10.3168/jds.2011-4980.
Christensen OF: Compatibility of pedigree-based and marker-based relationship matrics for single-step genetic evaluation. Genet Sel Evol. 2012, 44: 37-10.1186/1297-9686-44-37.
Vitezica ZG, Aguilar I, Misztal I, Legarra A: Bias in genomic predictions for populations under selection. Genet Res Camb. 2011, 93: 357-366. 10.1017/S001667231100022X.
Makgahlela ML, Mäntysaari EA, Strandén I, Koivula M, Nielsen US, Sillanpää MJ, Juga J: Across breed multi-trait random regression genomic predictions in the Nordic Red dairy cattle. J Anim Breed Genet. 2013, 130: 10-19. 10.1111/j.1439-0388.2012.01017.x.
Hayes BJ, Daetwyler HD, Bowman P, Moser G, Tier B, Crump R, Khatkar M, Raadsma HW, Goddard ME: Accuracy of genomic selection: comparing theory and results. Anim Breed Genet. 2009, 18: 34-37.