DNAPlotter: circular and linear interactive genome visualization

Bioinformatics - Tập 25 Số 1 - Trang 119-120 - 2009
Tim Carver1, Nicholas R. Thomson1, Alan J. Bleasby1, Matthew Berriman1, Julian Parkhill1
11 Wellcome Trust Sanger Institute, CB10 1SA and 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK

Tóm tắt

Abstract Summary: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages. Availability: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/ Contact:  [email protected]

Từ khóa


Tài liệu tham khảo

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Thông tin
Thông tin xuất bản

Bioinformatics

Tập 25 Số 1

119-120

Thông tin tác giả