Stress-Induced Activation of Heterochromatic Transcription
Tóm tắt
Từ khóa
Tài liệu tham khảo
E Heitz, 1928, Das Heterochromatin der Moose., Jahrb Wiss Botanik, 69, 762
ES Lander, 2001, Initial sequencing and analysis of the human genome., Nature, 409, 860, 10.1038/35057062
R Li, 2010, The sequence and de novo assembly of the giant panda genome., Nature, 463, 311, 10.1038/nature08696
2005, Initial sequence of the chimpanzee genome and comparison with the human genome., Nature, 437, 69, 10.1038/nature04072
RS Baucom, 2009, Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome., PLoS Genet, 5, e1000732, 10.1371/journal.pgen.1000732
PS Schnable, 2009, The B73 maize genome: complexity, diversity, and dynamics., Science, 326, 1112, 10.1126/science.1178534
AF Dernburg, 1996, Direct evidence of a role for heterochromatin in meiotic chromosome segregation., Cell, 86, 135, 10.1016/S0092-8674(00)80084-7
P Bernard, 2001, Requirement of heterochromatin for cohesion at centromeres., Science, 294, 2539, 10.1126/science.1064027
T de Lange, 2005, Shelterin: the protein complex that shapes and safeguards human telomeres., Genes Dev, 19, 2100, 10.1101/gad.1346005
RK Slotkin, 2007, Transposable elements and the epigenetic regulation of the genome., Nat Rev Genet, 8, 272, 10.1038/nrg2072
F Roudier, 2009, Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more., Trends Genet, 25, 511, 10.1016/j.tig.2009.09.013
I Vaillant, 2007, Role of histone and DNA methylation in gene regulation., Curr Opin Plant Biol, 10, 528, 10.1016/j.pbi.2007.06.008
YH Cheong, 2002, Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis., Plant Physiol, 129, 661, 10.1104/pp.002857
JA Kreps, 2002, Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress., Plant Physiol, 130, 2129, 10.1104/pp.008532
R Mahalingam, 2003, Characterizing the stress/defense transcriptome of Arabidopsis., Genome Biol, 4, R20, 10.1186/gb-2003-4-3-r20
A Matsui, 2008, Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array., Plant Cell Physiol, 49, 1135, 10.1093/pcp/pcn101
K Shinozaki, 2003, Regulatory network of gene expression in the drought and cold stress responses., Curr Opin Plant Biol, 6, 410, 10.1016/S1369-5266(03)00092-X
G Zeller, 2009, Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays., Plant J, 58, 1068, 10.1111/j.1365-313X.2009.03835.x
V Chinnusamy, 2009, Epigenetic regulation of stress responses in plants., Curr Opin Plant Biol, 12, 133, 10.1016/j.pbi.2008.12.006
R Sunkar, 2004, Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis., Plant Cell, 16, 2001, 10.1105/tpc.104.022830
O Borsani, 2005, Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis., Cell, 123, 1279, 10.1016/j.cell.2005.11.035
R Sunkar, 2007, Small RNAs as big players in plant abiotic stress responses and nutrient deprivation., Trends Plant Sci, 12, 301, 10.1016/j.tplants.2007.05.001
SW Ding, 2007, Antiviral immunity directed by small RNAs., Cell, 130, 413, 10.1016/j.cell.2007.07.039
LI Shukla, 2008, The role of microRNAs and other endogenous small RNAs in plant stress responses., Biochim Biophys Acta, 1779, 743, 10.1016/j.bbagrm.2008.04.004
H Jin, 2008, Endogenous small RNAs and antibacterial immunity in plants., FEBS Lett, 582, 2679, 10.1016/j.febslet.2008.06.053
C Lang-Mladek, 2010, Transgenerational Inheritance and Resetting of Stress-Induced Loss of Epigenetic Gene Silencing in Arabidopsis., Mol Plant
BP May, 2005, Differential regulation of strand-specific transcripts from Arabidopsis centromeric satellite repeats., PLoS Genet, 1, e79, 10.1371/journal.pgen.0010079
H Numa, 2010, Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana., EMBO J, 29, 352, 10.1038/emboj.2009.374
I Vaillant, 2006, MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis., EMBO Rep, 7, 1273, 10.1038/sj.embor.7400791
C Yokthongwattana, 2010, MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing., EMBO J, 29, 340, 10.1038/emboj.2009.328
X Zhang, 2006, Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis., Cell, 126, 1189, 10.1016/j.cell.2006.08.003
O Mathieu, 2007, Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation., Cell, 130, 851, 10.1016/j.cell.2007.07.007
O Mittelsten Scheid, 2002, Two regulatory levels of transcriptional gene silencing in Arabidopsis., Proc Natl Acad Sci U S A, 99, 13659, 10.1073/pnas.202380499
AV Probst, 2003, Two means of transcriptional reactivation within heterochromatin., Plant J, 33, 743, 10.1046/j.1365-313X.2003.01667.x
M Mirouze, 2009, Selective epigenetic control of retrotransposition in Arabidopsis., Nature, 461, 427, 10.1038/nature08328
S Tsukahara, 2009, Bursts of retrotransposition reproduced in Arabidopsis., Nature, 461, 423, 10.1038/nature08351
M Kato, 2003, Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis., Curr Biol, 13, 421, 10.1016/S0960-9822(03)00106-4
J Reinders, 2009, Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes., Genes Dev, 23, 939, 10.1101/gad.524609
H Hirochika, 2000, Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation., Plant Cell, 12, 357, 10.1105/tpc.12.3.357
A Miura, 2001, Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis., Nature, 411, 212, 10.1038/35075612
MW Kankel, 2003, Arabidopsis MET1 cytosine methyltransferase mutants., Genetics, 163, 1109, 10.1093/genetics/163.3.1109
JA Jeddeloh, 1999, Maintenance of genomic methylation requires a SWI2/SNF2-like protein., Nat Genet, 22, 94, 10.1038/8803
H Saze, 2003, Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis., Nat Genet, 34, 65, 10.1038/ng1138
JB Morel, 2000, DNA methylation and chromatin structure affect transcriptional and post-transcriptional transgene silencing in Arabidopsis., Curr Biol, 10, 1591, 10.1016/S0960-9822(00)00862-9
T Elmayan, 2005, Arabidopsis RPA2: a genetic link among transcriptional gene silencing, DNA repair, and DNA replication., Curr Biol, 15, 1919, 10.1016/j.cub.2005.09.044
P Amedeo, 2000, Disruption of the plant gene MOM releases transcriptional silencing of methylated genes., Nature, 405, 203, 10.1038/35012108
AV Probst, 2004, Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats., Plant Cell, 16, 1021, 10.1105/tpc.018754
S Takeda, 2004, BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis., Genes Dev, 18, 782, 10.1101/gad.295404
JE Burn, 1993, DNA methylation, vernalization, and the initiation of flowering., Proc Natl Acad Sci U S A, 90, 287, 10.1073/pnas.90.1.287
ES Dennis, 2007, Epigenetic regulation of flowering., Curr Opin Plant Biol, 10, 520, 10.1016/j.pbi.2007.06.009
R Bastow, 2004, Vernalization requires epigenetic silencing of FLC by histone methylation., Nature, 427, 164, 10.1038/nature02269
S Sung, 2004, Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3., Nature, 427, 159, 10.1038/nature02195
RA Jefferson, 1987, GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants., EMBO J, 6, 3901, 10.1002/j.1460-2075.1987.tb02730.x
Y Habu, 2006, Epigenetic regulation of transcription in intermediate heterochromatin., EMBO Rep, 7, 1279, 10.1038/sj.embor.7400835
JP Jackson, 2002, Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase., Nature, 416, 556, 10.1038/nature731
AM Lindroth, 2001, Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation., Science, 292, 2077, 10.1126/science.1059745
O Mathieu, 2005, Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis., EMBO J, 24, 2783, 10.1038/sj.emboj.7600743
A Steimer, 2000, Endogenous targets of transcriptional gene silencing in Arabidopsis., Plant Cell, 12, 1165, 10.1105/tpc.12.7.1165
JM Kim, 2008, Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana., Plant Cell Physiol, 49, 1580, 10.1093/pcp/pcn133
AV Gendrel, 2002, Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1., Science, 297, 1871, 10.1126/science.1074950
A Vongs, 1993, Arabidopsis thaliana DNA methylation mutants., Science, 260, 1926, 10.1126/science.8316832
W Aufsatz, 2002, HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA., EMBO J, 21, 6832, 10.1093/emboj/cdf663
Z Lippman, 2003, Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification., PLoS Biol, 1, e67, 10.1371/journal.pbio.0000067
J Murfett, 2001, Identification of Arabidopsis histone deacetylase HDA6 mutants that affect transgene expression., Plant Cell, 13, 1047, 10.1105/tpc.13.5.1047
K Earley, 2006, Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance., Genes Dev, 20, 1283, 10.1101/gad.1417706
X Lin, 1999, Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana., Nature, 402, 761, 10.1038/45471
P Meyer, 1992, Endogenous and environmental factors influence 35S promoter methylation of a maize A1 gene construct in transgenic petunia and its colour phenotype., Mol Gen Genet, 231, 345, 10.1007/BF00292701
M Tanurdzic, 2008, Epigenomic consequences of immortalized plant cell suspension culture., PLoS Biol, 6, e302, 10.1371/journal.pbio.0060302
JW Gowen, 1933, Effect of Temperature on Eversporting Eye Color in Drosophila Melanogaster., Science, 77, 312, 10.1126/science.77.1995.312
RC Allshire, 1994, Position effect variegation at fission yeast centromeres., Cell, 76, 157, 10.1016/0092-8674(94)90180-5
A Kloc, 2008, RNA interference guides histone modification during the S phase of chromosomal replication., Curr Biol, 18, 490, 10.1016/j.cub.2008.03.016
TA Volpe, 2002, Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi., Science, 297, 1833, 10.1126/science.1074973
D Fagegaltier, 2009, The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila., Proc Natl Acad Sci U S A, 106, 21258, 10.1073/pnas.0809208105
M Tariq, 2003, Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin., Proc Natl Acad Sci U S A, 100, 8823, 10.1073/pnas.1432939100
Z Xie, 2004, Genetic and functional diversification of small RNA pathways in plants., PLoS Biol, 2, e104, 10.1371/journal.pbio.0020104
SV Kumar, 2010, H2A.Z-containing nucleosomes mediate the thermosensory response in Arabidopsis., Cell, 140, 136, 10.1016/j.cell.2009.11.006
D Zilberman, 2008, Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks., Nature, 456, 125, 10.1038/nature07324
J Kilian, 2007, The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses., Plant J, 50, 347, 10.1111/j.1365-313X.2007.03052.x
J Browse, 2001, Temperature sensing and cold acclimation., Curr Opin Plant Biol, 4, 241, 10.1016/S1369-5266(00)00167-9
V Chinnusamy, 2007, Cold stress regulation of gene expression in plants., Trends Plant Sci, 12, 444, 10.1016/j.tplants.2007.07.002
JJ Burke, 2000, Isolation of Arabidopsis mutants lacking components of acquired thermotolerance., Plant Physiol, 123, 575, 10.1104/pp.123.2.575
CJ Lim, 2006, Gene expression profiles during heat acclimation in Arabidopsis thaliana suspension-culture cells., J Plant Res, 119, 373, 10.1007/s10265-006-0285-z
SN Hashida, 2003, Temperature shift coordinately changes the activity and the methylation state of transposon Tam3 in Antirrhinum majus., Plant Physiol, 132, 1207, 10.1104/pp.102.017533
SN Hashida, 2006, The temperature-dependent change in methylation of the Antirrhinum transposon Tam3 is controlled by the activity of its transposase., Plant Cell, 18, 104, 10.1105/tpc.105.037655
O Mittelsten Scheid, 1998, Release of epigenetic gene silencing by trans-acting mutations in Arabidopsis., Proc Natl Acad Sci U S A, 95, 632, 10.1073/pnas.95.2.632
D Zilberman, 2003, ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation., Science, 299, 716, 10.1126/science.1079695
SW Chan, 2006, RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsis., PLoS Genet, 2, e83, 10.1371/journal.pgen.0020083
Y Onodera, 2005, Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation., Cell, 120, 613, 10.1016/j.cell.2005.02.007