Sequence and analysis of the 60 kb conjugative, bacteriocin‐producing plasmid pMRC01 from Lactococcus lactis DPC3147

Molecular Microbiology - Tập 29 Số 4 - Trang 1029-1038 - 1998
Brian Dougherty1, Colin Hill, Janice Weidman, Des R. Richardson, J. Craig Venter, R. Paul Ross
1The Institute for Genomic Research, Rockville, MD, USA

Tóm tắt

The complete sequence of pMRC01, a large conjugative plasmid from Lactococcus lactis ssp. lactis DPC3147, has been determined. Using a shotgun sequencing approach, the 60 232 bp plasmid sequence was obtained by the assembly of 1056 underlying sequences (sevenfold average redundancy). Sixty‐four open reading frames (ORFs) were identified. Analysis of the gene organization of pMRC01 suggests that the plasmid can be divided into three functional domains, with each approximately 20 kb region separated by insertion sequence (IS) elements. The three regions are (i) the conjugative transfer region, including a 16‐gene Tra (transfer) operon; (ii) the bacteriocin production region, including an operon responsible for the synthesis of the novel bacteriocin lacticin 3147; and (iii) the phage resistance and plasmid replication region of the plasmid. The complete sequence of pMRC01 provides important information about these industrially relevant phenotypes and gives insight into the structure, function and evolution of large Gram‐positive conjugative plasmids in general. The completely sequenced pMRC01 plasmid should also provide a useful framework for the design of novel plasmids to be incorporated into starter strain improvement programmes for the dairy industry.

Từ khóa


Tài liệu tham khảo

10.1016/S0022-2836(05)80360-2

10.1128/AEM.46.3.549-552.1983

10.1016/0097-8485(93)85011-Z

Coakley M., 1997, Application and evaluation of the phage resistance‐ and bacteriocin‐encoding plasmid pMRC01 for the improvement of dairy starter cultures, Appl Environ Microbiol, 63, 1434, 10.1128/aem.63.4.1434-1440.1997

Cogan T.M.&Accolas J.‐P.(eds) (1995)Dairy Starter Cultures. New York; VCH Publishers.

10.1007/BF00395928

10.1126/science.7542800

10.1016/0378-1119(93)90442-6

Garvey P., 1995, Cloning and DNA sequence analysis of two abortive infection phage resistance determinants from the lactococcal plasmid pNP40, Appl Environ Microbiol, 61, 4321, 10.1128/aem.61.12.4321-4328.1995

10.1111/j.1574-6968.1990.tb04878.x

10.1128/jb.175.17.5510-5519.1993

10.1128/jb.176.23.7335-7344.1994

10.1146/annurev.cb.08.110192.000435

10.1111/j.1574-6976.1993.tb00013.x

Hill C.&Ross R.P.(1998) Starter cultures for the dairy industry. InGenetic Modification in the Food Industry. Roller S. and Harlander S. (eds). London: Blackie Academic and Professional.

10.1007/BF00282457

10.1109/51.473264

10.1007/BF01568807

10.1111/j.1574-6976.1993.tb00012.x

McAuliffe O., 1998, Lacticin 3147, a broad‐spectrum bacteriocin which selectively dissipates the membrane potential, Appl Environ Microbiol, 64, 439, 10.1128/AEM.64.2.439-445.1998

McDonald L.A., 1995, Optimization of Applied Biosystems 373 sequencer stretch modification, BioTechniques, 19, 464

10.1093/nar/16.24.11827

10.1128/jb.178.12.3531-3538.1996

10.1128/jb.175.14.4436-4447.1993

O'Connor L., 1996, AbiG, a genotypically novel abortive infection mechanism encoded by plasmid pCI750 of Lactococcus lactis ssp. cremoris UC653, Appl Environ Microbiol, 62, 3075, 10.1128/aem.62.9.3075-3082.1996

Ozawa Y., 1997, Cloning and genetic analysis of the UV resistance determinant (uvr) encoded on the Enterococcus faecalis pheromone‐responsive conjugative plasmid pAD1, J Bacteriol, 179, 7468, 10.1128/jb.179.23.7468-7475.1997

10.1038/39767

Polzin K.M., 1991, Identification, DNA sequence, and distribution of IS981, a new high‐copy‐number insertion sequence in lactococci, Appl Environ Microbiol, 57, 734, 10.1128/aem.57.3.734-743.1991

10.1111/j.1365-2672.1996.tb03286.x

Rince A., 1994, Cloning, expression, and nucleotide sequence of genes involved in production of lactococcin DR, a bacteriocin from Lactococcus lactis ssp. lactis, Appl Environ Microbiol, 60, 1652, 10.1128/aem.60.5.1652-1657.1994

10.1128/jb.173.23.7599-7606.1991

Romero D.A., 1990, Characterization of insertion sequence IS946, an Iso‐ISS1 element, isolated from the conjugative lactococcal plasmid pTR2030, J Bacteriol, 172, 4151, 10.1128/jb.172.8.4151-4160.1990

10.3168/jds.S0022-0302(93)77318-X

10.1016/0378-1119(94)00833-E

Ryan M.P., 1996, An application in cheddar cheese manufacture for a strain of Lactococcus lactis producing a novel broad‐spectrum bacteriocin, lacticin 3147, Appl Environ Microbiol, 62, 612, 10.1128/aem.62.2.612-619.1996

10.1099/00221287-140-6-1291

Sibakov M., 1991, Secretion of TEM beta‐lactamase with signal sequences isolated from the chromosome of Lactococcus lactis ssp. lactis, Appl Environ Microbiol, 57, 341, 10.1128/aem.57.2.341-348.1991

10.1089/gst.1995.1.9

10.1093/infdis/170.6.1539

10.1089/gst.1995.1.1

10.1016/S0076-6879(88)64083-3

10.1006/plas.1995.0006

10.1128/JB.177.15.4199-4206.1995