Phylogeography of the rare and endangered lycophyte<i>Isoetes yunguiensis</i>
Tóm tắt
Từ khóa
Tài liệu tham khảo
Avise, 1987, Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics, Annual Review of Ecology and Systematics, 18, 489, 10.1146/annurev.es.18.110187.002421
Bandelt, 1999, Median-joining networks for inferring intraspecific phylogenies, Molecular Biology and Evolution, 16, 37, 10.1093/oxfordjournals.molbev.a026036
Chen, 2008, Phylogeography of Pinus tabulaeformis Carr.(Pinaceae), a dominant species of coniferous forest in northern China, Molecular Ecology, 17, 4276, 10.1111/j.1365-294X.2008.03911.x
Chen, 2010, Genetic diversity and population structure of the endangered alpine quillwort Isoetes hypsophila Hand.-Mazz. revealed by AFLP markers, Plant Systematics and Evolution, 290, 127, 10.1007/s00606-010-0355-5
Cheng, 2001, Effect of the Tibetan plateau uplifting on geological environment of the Yunnan plateau, Geoscience, 15, 290
Dong, 2017, Red list assessment of lycophytes and ferns in China, Biodiversity Science, 25, 765, 10.17520/biods.2016204
Dong, 2018, Mating system and genetic variability of the endangered endemic aquatic Lycophyte, Isoëtes yunguiensis, in China determined using AFLP markers, American Fern Journal, 108, 47, 10.1640/0002-8444-108.2.47
Excoffier, 2010, Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Molecular Ecology Resources, 10, 564, 10.1111/j.1755-0998.2010.02847.x
Gao, 2012, Intraspecific divergences of Rhodiola alsia (Crassulaceae) based on plastid DNA and internal transcribed spacer fragments, Botanical Journal of the Linnean Society, 168, 204, 10.1111/j.1095-8339.2011.01193.x
Gao, 2016, Phylogeographic study revealed microrefugia for an endemic species on the Qinghai–Tibetan Plateau: Rhodiola chrysanthemifolia (Crassulaceae), Plant Systematics and Evolution, 302, 1179, 10.1007/s00606-016-1324-4
Gentili, 2010, Population structure and genetic diversity of the threatened quillwort Isoetes malinverniana and implication for conservation, Aquatic Botany, 93, 147, 10.1016/j.aquabot.2010.05.003
Gichira, 2016, Development of expressed sequence tag-based microsatellite markers for the critically endangered Isoëtes sinensis (Isoetaceae) based on transcriptome analysis, Genetics and Molecular Research, 15, 15038497, 10.4238/gmr.15038497
Huang, 2017, Analysis on the genetic diversity of endangered Isoetes sinensis Palmer from China based on the second intron of LEAFY, Plant Science Journal, 35, 73
Kalinowski, 2007, Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment, Molecular Ecology, 16, 1099, 10.1111/j.1365-294X.2007.03089.x
Kang, 2005, Genetic consequence of restricted habitat and population decline in endangered Isoetes sinensis (Isoetaceae), Annals of Botany, 96, 1265, 10.1093/aob/mci277
Li, 2015, Investigation of Isoetes yunguiensis of Guizhou Province, Seed, 34, 62
Li, 2017, The genetic structure and adaptive evolution of Isoetes on Hengduan Mountain Regions under the geographic and climatic influences, PhD dissertation
Li, 2019, Isoetes shangrilaensis, a new species of Isoetes from Hengduan mountain region of Shangri-la, Yunnan, Phytotaxa, 397, 65, 10.11646/phytotaxa.397.1.6
Li, 2018, Genetic diversity and population structure of the endangered basal angiosperm Brasenia schreberi (Cabombaceae) in China, PeerJ, 6, e5296, 10.7717/peerj.5296
Li, 2019, Genetic diversity and population structure of Ottelia acuminata var. jingxiensis, an endangered endemic aquatic plant from southwest China, Aquatic Botany, 152, 20, 10.1016/j.aquabot.2018.09.004
Li, 2012, Phylogeography and demographic history of Babina pleuraden (Anura, Ranidae) in southwestern China, PLOS ONE, 7, e34013, 10.1371/journal.pone.0034013
Librado, 2009, DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, 25, 1451, 10.1093/bioinformatics/btp187
Liu, 2019, Genetic diversity of the endangered Dalbergia odorifera revealed by SSR markers, Forests, 10, 225, 10.3390/f10030225
Liu, 2005, Isoetes orientalis (Isoetaceae), a new hexaploid quillwort from China, Novon, 15, 164
Liu, 2013, Comparative observation on the characteristics of leaves of four species in Chinese Isoetaceae, Bulletin of Botanical Research, 33, 528
Liu, 2002, Chromosome numbers of the Chinese Isoetes and their taxonomical significance, Acta Phytotaxonomica Sinica, 40, 351
Ma, 2018, Outcrossing rates and gene flow in natural population of the endangered endemic aquatic Lycophyte Isoetes yunguiensis as revealed by ISSR markers, Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 47, 339, 10.15835/nbha47111264
Mantel, 1967, The detection of disease clustering and a generalized regression approach, Cancer Research, 27, 209
Meng, 1998, Studies on Annalepis from middle Triassic along the YangZi river and ITS bearing on the origin of Isoetes, Journal of Botany, 08, 89
Nguyen, 2014, IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies, Molecular Biology and Evolution, 32, 268, 10.1093/molbev/msu300
Nishizawa, 2000, Primer pairs suitable for PCR-SSCP analysis of chloroplast DNA in angiosperms, Journal of Phytogeography and Taxonomy, 48, 63
Pang, 2003, The geographic distribution and habitat of the Isoetes plants in China, Biodiversity Science, 11, 288, 10.17520/biods.2003036
Peakall, 2012, GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update, Bioinformatics, 28, 2537, 10.1093/bioinformatics/bts460
Phillips, 2006, Maximum entropy modeling of species geographic distributions, Ecological Modelling, 190, 231, 10.1016/j.ecolmodel.2005.03.026
Pons, 1996, Measuring and testing genetic differentiation with ordered versus unordered alleles, Genetics, 144, 1237, 10.1093/genetics/144.3.1237
Pritchard, 2009, STRUCTURE ver. 2.3
Shaw, 2007, Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III, American Journal of Botany, 94, 275, 10.3732/ajb.94.3.275
Wang, 2014, Phylogeography of Cephalotaxus oliveri (Cephalotaxaceae) in relation to habitat heterogeneity, physical barriers and the uplift of the Yungui Plateau, Molecular Phylogenetics and Evolution, 80, 205, 10.1016/j.ympev.2014.08.015
Wang, 2002, Isoetes yunguiensis (Isoetaceae), a New Basic Diploid Quillwort from China, Novon, 12, 587, 10.2307/3393143
Wu, 2008, Collapsed Himalayan–Tibetan orogen and the rising Tibetan Plateau Acta Petrol, Sin, 24, 1, 10.1016/S1872-1508(08)60001-7
Yang, 2011, Gene flow dynamics of ex-situ conservation populations in two endangered Isoetes species: genetic implications for reintroduction, conservation and management, Plant Science Journal, 20, 319
Yeh, 2000, PopGene32, Microsoft windows-based freeware for population genetic analysis, version 1.32
Yu, 1999, Milestones of wild plant protection in China—list of national key protected wild plants (First batch), Plants, 5, 3
Yuan, 2012, Distribution of rare and endangered aqueous vegetation Yunnan-Guizhou Quillwort, a new record in Guizhou, Guizhou Science, 30, 94
Zhang, 2018, PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies, bioRxiv, 489088
Zhang, 2013, Isoëtaceae. Flora of China, 2-3, 35
Zhang, 2001, The discovery of Isoetes hypsophila in Zhongdian, Yunnan, Plants, 5, 4
Zhang, 2016, Research on the rind propagation of Isoetes yunguiensis in Nayong Gongtong Provincial Nature Reserve in Guizhou Province, Natural Science (Abstracts), 1, 62
Zhao, 2015, Comparative morphology of three Chinese Isoetes ligules, Acta Botanica Boreali-Occidentalia Sinica, 35, 730