PeerJ
SCOPUS (2013-2023)SCIE-ISI
2167-8359
2167-8359
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Lĩnh vực:
Biochemistry, Genetics and Molecular Biology (miscellaneous)Agricultural and Biological Sciences (miscellaneous)Neuroscience (miscellaneous)Medicine (miscellaneous)
Các bài báo tiêu biểu
VSEARCH: a versatile open source tool for metagenomicsBackground VSEARCH is an open source and free of charge multithreaded 64-bit tool for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data. It is designed as an alternative to the widely used USEARCH tool (Edgar, 2010) for which the source code is not publicly available, algorithm details are only rudimentarily d...
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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A brief introduction to mixed effects modelling and multi-model inference in ecologyThe use of linear mixed effects models (LMMs) is increasingly common in the analysis of biological data. Whilst LMMs offer a flexible approach to modelling a broad range of data types, ecological data are often complex and require complex model structures, and the fitting and interpretation of such models is not always straightforward. The ability to achieve robust biological inference req... ... hiện toàn bộ
Tập 6 - Trang e4794
SDMtoolbox 2.0: the next generation Python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analysesSDMtoolbox 2.0 is a software package for spatial studies of ecology, evolution, and genetics. The release of SDMtoolbox 2.0 allows researchers to use the most current ArcGIS software and MaxEnt software, and reduces the amount of time that would be spent developing common solutions. The central aim of this software is to automate complicated and repetitive spatial analyses in an intuitive ... ... hiện toàn bộ
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MaxEnt’s parameter configuration and small samples: are we paying attention to recommendations? A systematic reviewEnvironmental niche modeling (ENM) is commonly used to develop probabilistic maps of species distribution. Among available ENM techniques, MaxEnt has become one of the most popular tools for modeling species distribution, with hundreds of peer-reviewed articles published each year. MaxEnt’s popularity is mainly due to the use of a graphical interface and automatic parameter configuration c... ... hiện toàn bộ
Tập 5 - Trang e3093
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene ampliconsThe importance of 16S rRNA gene amplicon profiles for understanding the influence of microbes in a variety of environments coupled with the steep reduction in sequencing costs led to a surge of microbial sequencing projects. The expanding crowd of scientists and clinicians wanting to make use of sequencing datasets can choose among a range of multipurpose software platforms, the use of whi... ... hiện toàn bộ
Tập 5 - Trang e2836
Leopard (Panthera pardus) status, distribution, and the research efforts across its rangeThe leopard’s (Panthera pardus ) broad geographic range, remarkable adaptability, and secretive nature have contributed to a misconception that this species might not be severely threatened across its range. We find that not only are several subspecies and regional populations critically endangered but also the overall range loss is greater than the average for te... ... hiện toàn bộ
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De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic unitsBackground. 16S rRNA gene sequences are routinely assigned to operational taxonomic units (OTUs) that are then used to analyze complex microbial communities. A number of methods have been employed to carry out the assignment of 16S rRNA gene sequences to OTUs leading to confusion over which method is optimal. A recent study suggested that a clustering method should be...
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