The Phylogeny of Prokaryotes

American Association for the Advancement of Science (AAAS) - Tập 209 Số 4455 - Trang 457-463 - 1980
G. E. Fox, Erko Stackebrandt, Robert B. Hespell, Jane Gibson, Jack Maniloff, T. A. Dyer, R. S. Wolfe, W E Balch, R. S. Tanner, Linda J. Magrum, L. Zablen, Robert J. Blakemore, Radhey S. Gupta, Linda Bonen, B. J. Lewis, D. A. Stahl, K. R. Luehrsen, K. N. Chen, C R Woese

Tóm tắt

For the first time a single experimental approach, 16 S ribosomal RNA sequence characterization, has been used to develop an overview of phylogenetic relationships in the bacterial world. The technique permits the tracing of relationships back to the common ancestor of all extant life. This first glimpse of bacterial phylogeny reveals a world whose roots appear to span more than 3 billion years. A deep phylogenetic split exists among the bacteria, which necessitates their division into two major lines of descent, the archaebacteria and the true bacteria (or eubacteria). It is a general finding that the most ancient bacterial phenotypes are anaerobic, and that aerobic phenotypes have arisen a number of times. Photosynthetic phenotypes are also extremely ancient. Many nonphotosynthetic groups appear to have arisen from photosynthetic ancestry, which is reason to question the generally held belief that the first bacteria were anaerobic heterotrophs. The two ultimate lines of bacterial descent are no more closely related to one another than either is to the cytoplasmic aspect of the eukaryotic cell. However, in that the eukaryotic cell is a phylogenetic chimera, it itself cannot be seen as a line of descent comparable to the two bacterial lines—although some of its individual parts can be so viewed. In this way, the chloroplast and perhaps the mitochondrion are each eubacterial, and at least one ribosomal protein is archaebacterial. A third line of descent that is neither eubacterial nor archaebacterial is represented in the 18 S ribosomal RNA.

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Tài liệu tham khảo

ALLSOPP, A, PHYLOGENETIC RELATIONSHIPS OF PROCARYOTA AND ORIGIN OF EUCARYOTIC CELL, NEW PHYTOLOGIST 68: 591 (1969).

ANDERBERG M.R. CLUSTER ANAL APPLICA (1973).

BALCH, W.E., ANCIENT DIVERGENCE AMONG BACTERIA, JOURNAL OF MOLECULAR EVOLUTION 9: 305 (1977).

BALCH, W.E., METHANOGENS - RE-EVALUATION OF A UNIQUE BIOLOGICAL GROUP, MICROBIOLOGICAL REVIEWS 43: 260 (1979).

BEST, A.N., COMPOSITION AND CHARACTERIZATION OF TRANSFER-RNA FROM METHANOCOCCUS-VANNIELII, JOURNAL OF BACTERIOLOGY 133: 240 (1978).

BONEN, L, RIBOSOMAL-RNA HOMOLOGIES AND EVOLUTION OF FILAMENTOUS BLUE-GREEN BACTERIA, JOURNAL OF MOLECULAR EVOLUTION 10: 283 (1978).

BONEN, L, PARTIAL SEQUENCES OF 16S RIBOSOMAL-RNA AND PHYLOGENY OF BLUE-GREEN-ALGAE AND CHLOROPLASTS, NATURE 261: 669 (1976).

BONEN, L, PROKARYOTIC NATURE OF RED ALGAL CHLOROPLASTS, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 72: 2310 (1975).

BROCK, T.D., SULFOLOBUS - NEW GENUS OF SULFUR-OXIDIZING BACTERIA LIVING AT LOW PH AND HIGH-TEMPERATURE, ARCHIV FUR MIKROBIOLOGIE 84: 54 (1972).

CHATTON E TITRES TRAVOUX SCI (1937).

CUNNINGHAM, R.S., UNIQUE SPECIES OF 5-S, 18-S, AND 26-S RIBOSOMAL-RNA IN WHEAT MITOCHONDRIA, FEBS LETTERS 69: 116 (1976).

DELEY, J, INTRAGENERIC AND INTERGENERIC SIMILARITIES OF CHROMOBACTERIUM AND JANTHINOBACTERIUM RIBOSOMAL RIBONUCLEIC-ACID CISTRONS, INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 28: 154 (1978).

10.1126/science.472727

DESMEDT, J, INT J SYST BACTERIOL 27: 226 (1977).

DICKERSON, R.E., EVOLUTION AND GENE-TRANSFER IN PURPLE PHOTOSYNTHETIC BACTERIA, NATURE 283: 210 (1980).

DOOLITTLE, W.F., CAN J BIOCH 57: 879 (1979).

DOOLITTLE, W.F., SEQUENCE STUDIES ON 16S RIBOSOMAL-RNA FROM A BLUE-GREEN-ALGA, JOURNAL OF MOLECULAR EVOLUTION 4: 307 (1975).

DYER T UNPUBLISHED.

EIRCH, L.D., BIOCHEMISTRY-US 17: 4583 (1978).

FITCH, W.M., AN IMPROVED METHOD FOR DETERMINING CODON VARIABILITY IN A GENE AND ITS APPLICATION TO RATE OF FIXATION OF MUTATIONS IN EVOLUTION, BIOCHEMICAL GENETICS 4: 579 (1970).

FITCH, W.M., MOLECULAR EVOLUTION OF CYTOCHROME-C IN EUKARYOTES, JOURNAL OF MOLECULAR EVOLUTION 8: 13 (1976).

10.1126/science.155.3760.279

FOX, G.E., COMPARATIVE CATALOGING OF 16S RIBOSOMAL RIBONUCLEIC-ACID - MOLECULAR APPROACH TO PROCARYOTIC SYSTEMATICS, INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 27: 44 (1977).

FOX, G.E., CLASSIFICATION OF METHANOGENIC BACTERIA BY 16S RIBOSOMAL-RNA CHARACTERIZATION, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 74: 4537 (1977).

GIBSON, J, PHYLOGENETIC ANALYSIS OF THE PURPLE PHOTOSYNTHETIC BACTERIA, CURRENT MICROBIOLOGY 3: 59 (1979).

GUPTA R UNPUBLISHED.

HOLZER, G, GAS CHROMATOGRAPHIC-MASS SPECTROMETRIC ANALYSIS OF NEUTRAL LIPIDS FROM METHANOGENIC AND THERMOACIDOPHILIC BACTERIA, JOURNAL OF CHROMATOGRAPHY 186: 795 (1979).

HORI, H, EVOLUTIONARY CHANGE IN 5S-RNA SECONDARY STRUCTURE AND A PHYLOGENIC TREE OF 54 5S-RNA SPECIES, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 76: 381 (1979).

JOHNSON, J.L., TAXONOMY OF CLOSTRIDIA - RIBOSOMAL RIBONUCLEIC-ACID HOMOLOGIES AMONG SPECIES, JOURNAL OF GENERAL MICROBIOLOGY 88: 229 (1975).

JONES, J.B., METHANOCOCCUS-VANNIELII - ULTRASTRUCTURE AND SENSITIVITY TO DETERGENTS AND ANTIBIOTICS, JOURNAL OF BACTERIOLOGY 130: 1357 (1977).

JOSHI, J.G., PRESENCE OF 2 SPECIES OF DNA IN SOME HALOBACTERIA, JOURNAL OF MOLECULAR BIOLOGY 6: 34 (1963).

KANDLER, O, LACK OF PEPTIDOGLYCAN IN CELL-WALLS OF METHANOSARCINA-BARKERI, ARCHIVES OF MICROBIOLOGY 113: 57 (1977).

KANDLER, O, CHEMICAL COMPOSITION OF PEPTIDOGLYCAN-FREE CELL-WALLS OF METHANOGENIC BACTERIA, ARCHIVES OF MICROBIOLOGY 118: 141 (1978).

KANDLER, O, CHEMISTRY OF PEPTIDOGLYCAN-FREE CELL-WALLS OF METHANE BACTERIA, HOPPE-SEYLERS ZEITSCHRIFT FUR PHYSIOLOGISCHE CHEMIE 359: 282 (1978).

KANDLER, O, CELL-WALL STRUCTURES IN METHANE BACTERIA - EVOLUTION OF PROKARYOTES, NATURWISSENSCHAFTEN 66: 95 (1979).

KATES, M, ETHER LIPIDS CHEM BI: 351 (1972).

KONIG, H, ARCH MICROBIOL 123: 276 (1979).

KONIG, H, N-ACETYLTALOSAMINURONIC ACID A CONSTITUENT OF THE PSEUDOMUREIN OF THE GENUS METHANOBACTERIUM, ARCHIVES OF MICROBIOLOGY 123: 295 (1979).

KONIG, H, AMINO-ACID SEQUENCE OF THE PEPTIDE MOIETY OF THE PSEUDOMUREIN FROM METHANOBACTERIUM-THERMOAUTOTROPHICUM, ARCHIVES OF MICROBIOLOGY 121: 271 (1979).

LANGWORTHY, T.A., LONG-CHAIN DIGLYCEROL TETRAETHERS FROM THERMOPLASMA-ACIDOPHILUM, BIOCHIMICA ET BIOPHYSICA ACTA 487: 37 (1977).

LANGWORTHY, T.A., LONG-CHAIN GLYCEROL DIETHER AND POLYOL DIALKYL GLYCEROL TRIETHER LIPIDS OF SULFOLOBUS-ACIDOCALDARIUS, JOURNAL OF BACTERIOLOGY 119: 106 (1974).

LUEHRSEN K UNPUBLISHED.

MAGRUM, L.J., ARE EXTREME HALOPHILES ACTUALLY BACTERIA, JOURNAL OF MOLECULAR EVOLUTION 11: 1 (1978).

MARGULIS L ORIGIN EUCARYOTIC CE (1970).

MATHESON, A.T., RIBOSOMES STRUCTURE: 297 (1980).

MOORE, R.L., CHARACTERIZATION OF DEOXYRIBONUCLEIC ACID OF VARIOUS STRAINS OF HALOPHILIC BACTERIA, JOURNAL OF BACTERIOLOGY 99: 248 (1969).

MURRAY RGE BERGEYS MANUAL DETER (1974).

PACE, B, HOMOLOGY OF RIBOSOMAL RIBONUCLEIC ACID OF DIVERSE BACTERIAL SPECIES WITH ESCHERICHIA-COLI AND BACILLUS-STEAROTHERMOPHILUS, JOURNAL OF BACTERIOLOGY 107: 543 (1971).

PECHMAN, K.J., PHYLOGENETIC STATUS OF SPOROSARCINA-UREAE, INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY 26: 305 (1976).

SANGER, F, J MOL BIOL 13: 373 (1965).

10.1126/science.202030

STACKEBRANDT E COMMUNICATION.

STACKEBRANDT, E, PHYLOGENETIC DISSECTION OF THE FAMILY MICROCOCCACEAE, CURRENT MICROBIOLOGY 2: 317 (1979).

STANIER, R.Y., SYMPOSIUM OF THE SOCIETY FOR GENERAL MICROBIOLOGY 20: 1 (1970).

STEBER, J, HALOCOCCUS-MORRHUAE - SULFATED HETEROPOLYSACCHARIDE AS STRUCTURAL COMPONENT OF BACTERIAL-CELL WALL, ARCHIVES OF MICROBIOLOGY 105: 173 (1975).

TANAKA, M, PRIMARY STRUCTURE OF CLOSTRIDIUM-TARTARIVORUM FERREDOXIN, A HEAT-STABLE FERREDOXIN, JOURNAL OF BIOLOGICAL CHEMISTRY 246: 3953 (1971).

TAYLOR, C.D., STRUCTURE AND METHYLATION OF COENZYME M (HSCH2CH2SO3), JOURNAL OF BIOLOGICAL CHEMISTRY 249: 4879 (1974).

THAUER, R.K., METHANOGENIC BACTERIA - UNUSUAL CELL COMPONENTS AND METABOLISM IN BACTERIAL GROUP WITH SPECIAL PHYLOGENIC POSITION, NATURWISSENSCHAFTEN 66: 89 (1979).

TORNABENE, T.G., PHYTANYL-GLYCEROL ETHERS AND SQUALENES IN ARCHAEBACTERIUM METHANOBACTERIUM-THERMOAUTOTROPHICUM, JOURNAL OF MOLECULAR EVOLUTION 11: 259 (1978).

TORNABENE, T.G., SQUALENES, PHYTANES AND OTHER ISOPRENOIDS AS MAJOR NEUTRAL LIPIDS OF METHANOGENIC AND THERMOACIDOPHILIC ARCHAEBACTERIA, JOURNAL OF MOLECULAR EVOLUTION 13: 73 (1979).

10.1126/science.758677

UCHIDA, T, USE OF RIBONUCLEASE-U2 IN RNA SEQUENCE DETERMINATION - SOME CORRECTIONS IN CATALOG OF OLIGOMERS PRODUCED BY RIBONUCLEASE-T1 DIGESTION OF ESCHERICHIA-COLI 16S RIBOSOMAL-RNA, JOURNAL OF MOLECULAR EVOLUTION 3: 63 (1974).

VANNIEL, C.B., THE CLASSIFICATION AND NATURAL RELATIONSHIPS OF BACTERIA, COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 11: 285 (1946).

Wallace, D. G., Proceedings of the National Academy of Sciences of the United States of America 68: 3127 (1971).

WEIMER, P.J., ACETATE ASSIMILATION PATHWAY OF METHANOSARCINA-BARKERI, JOURNAL OF BACTERIOLOGY 137: 332 (1979).

WHITTAKER, R.H., PARASITIC PROTOZOA 1: 1 (1977).

WILSON, A.C., BIOCHEMICAL EVOLUTION, ANNUAL REVIEW OF BIOCHEMISTRY 46: 573 (1977).

WOESE, C.R., COMPARISON OF 16S RIBOSOMAL-RNAS FROM MESOPHILIC AND THERMOPHILIC BACILLI - SOME MODIFICATIONS IN SANGER METHOD FOR RNA SEQUENCING, JOURNAL OF MOLECULAR EVOLUTION 7: 197 (1976).

WOESE, C.R., CONCEPT OF CELLULAR EVOLUTION, JOURNAL OF MOLECULAR EVOLUTION 10: 1 (1977).

WOESE, C.R., ARCHAEBACTERIA, JOURNAL OF MOLECULAR EVOLUTION 11: 245 (1978).

WOESE, C.R., DO GENEALOGICAL PATTERNS IN PURPLE PHOTOSYNTHETIC BACTERIA REFLECT INTERSPECIFIC GENE-TRANSFER, NATURE 283: 212 (1980).

WOESE, C.R., PHYLOGENETIC ANALYSIS OF THE MYCOPLASMAS, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES 77: 494 (1980).

WOESE, C.R., PHYLOGENETIC STRUCTURE OF PROKARYOTIC DOMAIN - PRIMARY KINGDOMS, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 74: 5088 (1977).

WOESE C.R. UNPUBLISHED.

ZABLEN, L, PHYLOGENETIC STATUS OF PASTEURELLA-PESTIS, JOURNAL OF MOLECULAR EVOLUTION 4: 347 (1975).

ZABLEN, L, PROCARYOTE PHYLOGENY IV - CONCERNING PHYLOGENETIC STATUS OF A PHOTOSYNTHETIC BACTERIUM, JOURNAL OF MOLECULAR EVOLUTION 5: 25 (1975).

ZABLEN, L.B., PHYLOGENETIC ORIGIN OF CHLOROPLAST AND PROKARYOTIC NATURE OF ITS RIBOSOMAL-RNA, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 72: 2418 (1975).

ZEIKUS, J.G., J MICROBIOL SEROL 41: 171 (1975).

ZILLIG, W, DNA-DEPENDENT RNA-POLYMERASE FROM HALOBACTERIUM-HALOBIUM, EUROPEAN JOURNAL OF BIOCHEMISTRY 91: 193 (1978).

ZILLIG, W, DNA-DEPENDENT RNA-POLYMERASE FROM THE ARCHAEBACTERIUM SULFOLOBUS-ACIDOCALDARIUS, EUROPEAN JOURNAL OF BIOCHEMISTRY 96: 597 (1979).

Zillig W. paper presented Symposium on Evolution of Molecular Mechanisms Hokeido Japan September (1979).

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American Association for the Advancement of Science (AAAS)

Tập 209 Số 4455

457-463

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