Dorsal-ventral axis formation in sea urchin embryos

Agca, 2009, Reduced o2 and elevated ros in sea urchin embryos leads to defects in ectoderm differentiation, Developmental Dynamics, 238, 1777, 10.1002/dvdy.22001 Angerer, 2011, The evolution of nervous system patterning: Insights from sea urchin development, Development, 138, 3613, 10.1242/dev.058172 Annunziata, 2014, Pattern and process during sea urchin gut morphogenesis: The regulatory landscape, Genesis, 52, 251, 10.1002/dvg.22738 Barsi, 2016, Cis-regulatory control of the initial neurogenic pattern of onecut gene expression in the sea urchin embryo, Developmental Biology, 409, 310, 10.1016/j.ydbio.2015.10.021 Barsi, 2015, Geometric control of ciliated band regulatory states in the sea urchin embryo, Development, 142, 953 Ben-Tabou de-Leon, 2013, Gene regulatory control in the sea urchin aboral ectoderm: Spatial initiation, signaling inputs, and cell fate lockdown, Developmental Biology, 374, 245, 10.1016/j.ydbio.2012.11.013 Bradham, 2006, P38 mapk is essential for secondary axis specification and patterning in sea urchin embryos, Development, 133, 21, 10.1242/dev.02160 Bradham, 2009, Chordin is required for neural but not axial development in sea urchin embryos, Developmental Biology, 328, 221, 10.1016/j.ydbio.2009.01.027 Burke, 2014, Sea urchin neural development and the metazoan paradigm of neurogenesis, Genesis, 52, 208, 10.1002/dvg.22750 Cameron, 1990, Segregation of oral from aboral ectoderm precursors is completed at fifth cleavage in the embryogenesis of strongylocentrotus purpuratus, Developmental Biology, 137, 77, 10.1016/0012-1606(90)90009-8 Cavalieri, 2014, Early asymmetric cues triggering the dorsal/ventral gene regulatory network of the sea urchin embryo, eLife, 3, 10.7554/eLife.04664 Chang, 2017, Asymmetric distribution of hypoxia-inducible factor alpha regulates dorsoventral axis establishment in the early sea urchin embryo, Development, 144, 2940 Chang, 2016, Regulatory circuit rewiring and functional divergence of the duplicate admp genes in dorsoventral axial patterning, Developmental Biology, 410, 108, 10.1016/j.ydbio.2015.12.015 Chen, 2011, The dynamic gene expression patterns of transcription factors constituting the sea urchin aboral ectoderm gene regulatory network, Developmental Dynamics, 240, 250, 10.1002/dvdy.22514 Child, 1941, Formation and reduction of indophenol blue in development of an echinoderm, Proceedings of the National Academy of Sciences of the United States of America, 27, 523, 10.1073/pnas.27.11.523 Coffman, 2001, Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry, Developmental Biology, 230, 18, 10.1006/dbio.2000.9996 Coffman, 2004, Oral-aboral axis specification in the sea urchin embryo ii. Mitochondrial distribution and redox state contribute to establishing polarity in strongylocentrotus purpuratus, Developmental Biology, 273, 160, 10.1016/j.ydbio.2004.06.005 Coffman, 2014, Oral-aboral axis specification in the sea urchin embryo, iv: Hypoxia radializes embryos by preventing the initial spatialization of nodal activity, Developmental Biology, 386, 302, 10.1016/j.ydbio.2013.12.035 Czihak, 1963, Entwicklungsphysiologische untersuchungen an echiniden (verteilung und bedeutung der cytochromoxydase), Roux' Arch. Entwickl. Mech Dev, 154, 272, 10.1007/BF00582031 Davidson, 1998, Specification of cell fate in the sea urchin embryo: Summary and some proposed mechanisms, Development, 125, 3269, 10.1242/dev.125.17.3269 De Robertis, 2008, Evo-devo: Variations on ancestral themes, Cell, 132, 185, 10.1016/j.cell.2008.01.003 De Robertis, 2004, Dorsal-ventral patterning and neural induction in xenopus embryos, Annual Review of Cell and Developmental Biology, 20, 285, 10.1146/annurev.cellbio.20.011403.154124 Duboc, 2010, Nodal and bmp2/4 pattern the mesoderm and endoderm during development of the sea urchin embryo, Development, 137, 223, 10.1242/dev.042531 Duboc, 2008, A conserved role for the nodal signaling pathway in the establishment of dorso-ventral and left-right axes in deuterostomes, J Exp Zoolog B Mol Dev Evol, 310, 41, 10.1002/jez.b.21121 Duboc, 2004, Nodal and bmp2/4 signaling organizes the oral-aboral axis of the sea urchin embryo, Developmental Cell, 6, 397, 10.1016/S1534-5807(04)00056-5 Duloquin, 2007, Localized vegf signaling from ectoderm to mesenchyme cells controls morphogenesis of the sea urchin embryo skeleton, Development, 134, 2293, 10.1242/dev.005108 Emlet, 1995, Larval spicules, cilia, and symmetry as remnants of indirect development in the direct developing sea urchin heliocidaris erythrogramma, Developmental Biology, 167, 405, 10.1006/dbio.1995.1037 Erkenbrack, 2016, Divergence of ectodermal and mesodermal gene regulatory network linkages in early development of sea urchins, Proceedings of the National Academy of Sciences of the United States of America, 113, E7202 Erkenbrack, 2015, Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses, Proceedings of the National Academy of Sciences of the United States of America, 112, E4075 Ettensohn, 2013, Encoding anatomy: Developmental gene regulatory networks and morphogenesis, Genesis, 51, 383, 10.1002/dvg.22380 Floc'hlay, 2021, Deciphering and modelling the tgf-beta signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo, Development, 148 Flowers, 2004, Nodal/activin signaling establishes oral-aboral polarity in the early sea urchin embryo, Developmental Dynamics, 231, 727, 10.1002/dvdy.20194 Gavino, 2011, A bmp/admp regulatory circuit controls maintenance and regeneration of dorsal-ventral polarity in planarians, Current Biology, 21, 294, 10.1016/j.cub.2011.01.017 Gildor, 2015, Comparative study of regulatory circuits in two sea urchin species reveals tight control of timing and high conservation of expression dynamics, PLoS Genetics, 11, 10.1371/journal.pgen.1005435 Haillot, 2015, The maternal maverick/gdf15-like tgf-beta ligand panda directs dorsal-ventral axis formation by restricting nodal expression in the sea urchin embryo, PLoS Biology, 13, 10.1371/journal.pbio.1002247 Henry, 1990, Evolutionary change in the process of dorsoventral axis determination in the direct developing sea-urchin, heliocidaris-erythrogramma, Developmental Biology, 141, 55, 10.1016/0012-1606(90)90101-N Howard-Ashby, 2006, Gene families encoding transcription factors expressed in early development of strongylocentrotus purpuratus, Developmental Biology, 300, 90, 10.1016/j.ydbio.2006.08.033 Israel, 2016, Comparative developmental transcriptomics reveals rewiring of a highly conserved gene regulatory network during a major life history switch in the sea urchin genus heliocidaris, PLoS Biology, 14, 10.1371/journal.pbio.1002391 Lapraz, 2009, Patterning of the dorsal-ventral axis in echinoderms: Insights into the evolution of the bmp-chordin signaling network, PLoS Biology, 7, 10.1371/journal.pbio.1000248 Lapraz, 2015, A deuterostome origin of the spemann organiser suggested by nodal and admps functions in echinoderms, Nature Communications, 6, 8434, 10.1038/ncomms9434 Layous, 2021, The tolerance to hypoxia is defined by a time-sensitive response of the gene regulatory network in sea urchin embryos, Development, 148, 10.1242/dev.195859 Li, 2014, Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo, Proceedings of the National Academy of Sciences of the United States of America, 111, E906 Li, 2012, Direct and indirect control of oral ectoderm regulatory gene expression by nodal signaling in the sea urchin embryo, Developmental Biology, 369, 377, 10.1016/j.ydbio.2012.06.022 Li, 2013, New regulatory circuit controlling spatial and temporal gene expression in the sea urchin embryo oral ectoderm grn, Developmental Biology, 382, 268, 10.1016/j.ydbio.2013.07.027 Lin, 2016, Genome editing in sea urchin embryos by using a crispr/cas9 system, Developmental Biology, 409, 420, 10.1016/j.ydbio.2015.11.018 Love, 2006, Larval ectoderm, organizational homology, and the origins of evolutionary novelty. Journal of experimental zoology part B-molecular and developmental, Evolution, 306b, 18 Luo, 2012, Opposing nodal and bmp signals regulate left-right asymmetry in the sea urchin larva, PLoS Biology, 10, 10.1371/journal.pbio.1001402 Malik, 2017, Parallel embryonic transcriptional programs evolve under distinct constraints and may enable morphological conservation amidst adaptation, Developmental Biology, 430, 202, 10.1016/j.ydbio.2017.07.019 Materna, 2012, A comprehensive analysis of delta signaling in pre-gastrular sea urchin embryos, Developmental Biology, 364, 77, 10.1016/j.ydbio.2012.01.017 Materna, 2013, Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos, Developmental Biology, 375, 92, 10.1016/j.ydbio.2012.11.033 McClay, 2011, Evolutionary crossroads in developmental biology: Sea urchins, Development, 138, 2639, 10.1242/dev.048967 McIntyre, 2013, Short-range wnt5 signaling initiates specification of sea urchin posterior ectoderm, Development, 140, 4881, 10.1242/dev.095844 Molina, 2020, Maternal factors regulating symmetry breaking and dorsal-ventral axis formation in the sea urchin embryo, Current Topics in Developmental Biology, 140, 283, 10.1016/bs.ctdb.2019.10.007 Molina, 2018, Mapk and gsk3/ss-trcp-mediated degradation of the maternal ets domain transcriptional repressor yan/tel controls the spatial expression of nodal in the sea urchin embryo, PLoS Genetics, 14, 10.1371/journal.pgen.1007621 Molina, 2017, P38 mapk as an essential regulator of dorsal-ventral axis specification and skeletogenesis during sea urchin development: A re-evaluation, Development, 144, 2270 Mongiardino Koch, 2018, A phylogenomic resolution of the sea urchin tree of life, BMC Evolutionary Biology, 18, 189, 10.1186/s12862-018-1300-4 Nam, 2007, Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network, Developmental Biology, 306, 860, 10.1016/j.ydbio.2007.03.033 Ohguro, 2011, Involvement of delta and nodal signals in the specification process of five types of secondary mesenchyme cells in embryo of the sea urchin, hemicentrotus pulcherrimus, Development Growth & Differentiation, 53, 110, 10.1111/j.1440-169X.2010.01233.x Oliveri, 2006, Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo, Development, 133, 4173, 10.1242/dev.02577 Pease, 1939, An analysis of the factors of bilateral determination in centrifuged echinoderm embryos, Journal of Experimental Zoology, 80, 225, 10.1002/jez.1400800205 Pease, 1941, Echinoderm bilateral determination in chemical concentration gradients i the effects of cyanide, ferricyanide, iodoacetate, picrate, dinitrophenol, urethane, iodine, malonate, etc, Journal of Experimental Zoology, 86, 381, 10.1002/jez.1400860305 Pease, 1942, Echinoderm bilateral determination in chemical concentration gradients ii the effects of azide, pilocarpine, pyocyanine, diamine, cysteine, glutathione, and lithium, Journal of Experimental Zoology, 89, 329, 10.1002/jez.1400890209 Pease, 1942, Echinoderm bilateral determination in chemical concentration gradients iii the effects of carbon monoxide and other gases, Journal of Experimental Zoology, 89, 347, 10.1002/jez.1400890210 Perillo, 2016, A pancreatic exocrine-like cell regulatory circuit operating in the upper stomach of the sea urchin strongylocentrotus purpuratus larva, BMC Evolutionary Biology, 16, 117, 10.1186/s12862-016-0686-0 Raff, 2009, Chapter 7. Axis formation and the rapid evolutionary transformation of larval form, Current Topics in Developmental Biology, 86, 163, 10.1016/S0070-2153(09)01007-2 Range, 2007, Cis-regulatory analysis of nodal and maternal control of dorsal-ventral axis formation by univin, a tgf-beta related to vg1, Development, 134, 3649, 10.1242/dev.007799 Range, 2011, Maternal oct1/2 is required for nodal and vg1/univin expression during dorsal-ventral axis specification in the sea urchin embryo, Developmental Biology, 357, 440, 10.1016/j.ydbio.2011.07.005 Ransick, 2006, Cis-regulatory processing of notch signaling input to the sea urchin glial cells missing gene during mesoderm specification, Developmental Biology, 297, 587, 10.1016/j.ydbio.2006.05.037 Reversade, 2005, Regulation of admp and bmp2/4/7 at opposite embryonic poles generates a self-regulating morphogenetic field, Cell, 123, 1147, 10.1016/j.cell.2005.08.047 Rottinger, 2006, Nemo-like kinase (nlk) acts downstream of notch/delta signalling to downregulate tcf during mesoderm induction in the sea urchin embryo, Development, 133, 4341, 10.1242/dev.02603 Rottinger, 2008, Fgf signals guide migration of mesenchymal cells, control skeletal morphogenesis and regulate gastrulation during sea urchin development, Development, 135, 353, 10.1242/dev.014282 Saudemont, 2010, Ancestral regulatory circuits governing ectoderm patterning downstream of nodal and bmp2/4 revealed by gene regulatory network analysis in an echinoderm, PLoS Genetics, 6, 10.1371/journal.pgen.1001259 Schofield, 2004, Oxygen sensing by hif hydroxylases, Nature Reviews. Molecular Cell Biology, 5, 343, 10.1038/nrm1366 Slota, 2018, Identification of neural transcription factors required for the differentiation of three neuronal subtypes in the sea urchin embryo, Developmental Biology, 435, 138, 10.1016/j.ydbio.2017.12.015 Smith, 2013, Chapter 1 - phylogeny of sea urchins, 10.1016/B978-0-12-396491-5.00001-0 Smith, 2008, Nodal expression and heterochrony in the evolution of dorsal-ventral and left-right axes formation in the direct-developing sea urchin heliocidaris erythrogramma, Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution, 310, 609, 10.1002/jez.b.21233 Solek, 2013, An ancient role for Gata-1/2/3 and scl transcription factor homologs in the development of immunocytes, Developmental Biology, 382, 280, 10.1016/j.ydbio.2013.06.019 Srivastava, 2014, Whole-body acoel regeneration is controlled by wnt and bmp-admp signaling, Current Biology, 24, 1107, 10.1016/j.cub.2014.03.042 Stenzel, 1994, The univin gene encodes a member of the transforming growth-factor-beta superfamily with restricted expression in the sea-urchin embryo, Developmental Biology, 166, 149, 10.1006/dbio.1994.1303 Su, 2009, Gene regulatory networks for ectoderm specification in sea urchin embryos, Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1789, 261, 10.1016/j.bbagrm.2009.02.002 Su, 2009, A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo, Developmental Biology, 329, 410, 10.1016/j.ydbio.2009.02.029 Summers, 1996, The orientation of first cleavage in the sea urchin embryo, lytechinus variegatus, does not specify the axes of bilateral symmetry, Developmental Biology, 175, 177, 10.1006/dbio.1996.0105 Suzuki, 2018, Transforming growth factor-beta signal regulates gut bending in the sea urchin embryo, Development, Growth & Differentiation, 60, 216, 10.1111/dgd.12434 Tsironis, 2021, Coup-tf: A maternal factor essential for differentiation along the embryonic axes in the sea urchin paracentrotus lividus, Developmental Biology, 475, 131, 10.1016/j.ydbio.2020.12.012 Tu, 2006, Sea urchin forkhead gene family: Phylogeny and embryonic expression, Developmental Biology, 300, 49, 10.1016/j.ydbio.2006.09.031 van Heijster, 2014, A computational model for bmp movement in sea urchin embryos, Journal of Theoretical Biology, 363, 277, 10.1016/j.jtbi.2014.08.026 Wilson, 2005, Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins heliocidaris tuberculata and h, Erythrogramma. Evol Dev, 7, 401, 10.1111/j.1525-142X.2005.05045.x Wilson, 2005, Major regulatory factors in the evolution of development: The roles of goosecoid and msx in the evolution of the direct-developing sea urchin heliocidaris erythrogramma, Evolution & Development, 7, 416, 10.1111/j.1525-142X.2005.05046.x Wray, 1996, Parallel evolution of nonfeeding larvae in echinoids, Systematic Biology, 45, 308, 10.1093/sysbio/45.3.308 Wray, 1989, Evolutionary modification of cell lineage in the direct-developing sea urchin heliocidaris erythrogramma, Developmental Biology, 132, 458, 10.1016/0012-1606(89)90242-X Wray, 1990, Novel origins of lineage founder cells in the direct-developing sea urchin heliocidaris erythrogramma, Developmental Biology, 141, 41, 10.1016/0012-1606(90)90100-W Wray, 1991, The evolution of developmental strategy in marine invertebrates, Trends in Ecology & Evolution, 6, 45, 10.1016/0169-5347(91)90121-D Yaguchi, 2016, Cooperative wnt-nodal signals regulate the patterning of anterior neuroectoderm, PLoS Genetics, 12, 10.1371/journal.pgen.1006001 Yaguchi, 2019, Evolution of nitric oxide regulation of gut function, Proceedings of the National Academy of Sciences of the United States of America, 116, 5607, 10.1073/pnas.1816973116 Yaguchi, 2008, A wnt-foxq2-nodal pathway links primary and secondary axis specification in sea urchin embryos, Developmental Cell, 14, 97, 10.1016/j.devcel.2007.10.012 Yaguchi, 2010, Tgfbeta signaling positions the ciliary band and patterns neurons in the sea urchin embryo, Developmental Biology, 347, 71, 10.1016/j.ydbio.2010.08.009 Yaguchi, 2006, Specification of ectoderm restricts the size of the animal plate and patterns neurogenesis in sea urchin embryos, Development, 133, 2337, 10.1242/dev.02396 Yaguchi, 2007, Sp-smad2/3 mediates patterning of neurogenic ectoderm by nodal in the sea urchin embryo, Developmental Biology, 302, 494, 10.1016/j.ydbio.2006.10.010 Yamazaki, 2014, Larval mesenchyme cell specification in the primitive echinoid occurs independently of the double-negative gate, Development, 141, 2669, 10.1242/dev.104331