<scp>genalex</scp> 6: genetic analysis in Excel. Population genetic software for teaching and research

Wiley - Tập 6 Số 1 - Trang 288-295 - 2006
Rod Peakall1, Peter E. Smouse2
1School of Botany & Zoology, The Australian National University, Canberra, ACT 0200, Australia
2Department of Ecology, Evolution and Natural Resources, Cook College, Rutgers University, New Brunswick, NJ 08901-8551, USA.

Tóm tắt

Abstract

genalex is a user‐friendly cross‐platform package that runs within Microsoft Excel, enabling population genetic analyses of codominant, haploid and binary data. Allele frequency‐based analyses include heterozygosity, F statistics, Nei's genetic distance, population assignment, probabilities of identity and pairwise relatedness. Distance‐based calculations include amova, principal coordinates analysis (PCA), Mantel tests, multivariate and 2D spatial autocorrelation and twogener. More than 20 different graphs summarize data and aid exploration. Sequence and genotype data can be imported from automated sequencers, and exported to other software. Initially designed as tool for teaching, genalex 6 now offers features for researchers as well. Documentation and the program are available at http://www.anu.edu.au/BoZo/GenAlEx/

Từ khóa


Tài liệu tham khảo

Ner JK, 2004, A Primer of Ecological Genetics

Double MC, 2005, Dispersal, philopatry and infidelity: dissecting local genetic structure in superb fairy‐wrens (Malurus cyaneus), Evolution, 59, 625

Excoffier L, 1992, Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitocondrial DNA restriction sites, Genetics, 131, 479, 10.1093/genetics/131.2.479

Flanagan NS, 2005, A Guide to genalex 6. Genetic Analysis in Excel

10.1046/j.1365-294X.2003.01702.x

10.2307/1942552

Hedrick PW, 2000, Genetics of Populations

10.1111/j.1095-8312.1999.tb01157.x

10.1046/j.1365-294x.1999.00652.x

10.1111/j.1365-294X.1995.tb00227.x

10.1046/j.1365-294X.2004.02008.x

Peakall R, 2005, Mark–recapture by genetic tagging reveals restricted movements by bush rats, Rattus fuscipes, in a fragmented landscape, Journal of Zoology

10.1111/j.0014-3820.2003.tb00327.x

Peakall R, 2001, genalex 5: Genetic Analysis in Excel. Population Genetic Software for Teaching and Research

10.1111/j.1365-294X.1995.tb00203.x

10.1111/j.1558-5646.1989.tb04226.x

10.1890/03-4111

10.1111/j.0014-3820.2001.tb01291.x

10.2307/2413122

10.1046/j.1365-2540.1999.00518.x

Thông tin
Thông tin xuất bản

Wiley

Tập 6 Số 1

288-295

Thông tin tác giả