<scp>TNT</scp> version 1.5, including a full implementation of phylogenetic morphometrics

Cladistics - Tập 32 Số 3 - Trang 221-238 - 2016
Pablo A. Goloboff1, Santiago A. Catalano2,1
1Unidad Ejecutora Lillo Consejo Nacional de Investigaciones Científicas y Técnicas Miguel Lillo 251 4000 S.M. de Tucumán Argentina
2Facultad de Ciencias Naturales e Instituto Miguel Lillo Universidad Nacional de Tucumán Miguel Lillo 205 4000 S.M. de Tucumán Argentina

Tóm tắt

AbstractVersion 1.5 of the computer program TNT completely integrates landmark data into phylogenetic analysis. Landmark data consist of coordinates (in two or three dimensions) for the terminal taxa; TNT reconstructs shapes for the internal nodes such that the difference between ancestor and descendant shapes for all tree branches sums up to a minimum; this sum is used as tree score. Landmark data can be analysed alone or in combination with standard characters; all the applicable commands and options in TNT can be used transparently after reading a landmark data set. The program continues implementing all the types of analyses in former versions, including discrete and continuous characters (which can now be read at any scale, and automatically rescaled by TNT). Using algorithms described in this paper, searches for landmark data can be made tens to hundreds of times faster than it was possible before (from T to 3T times faster, where T is the number of taxa), thus making phylogenetic analysis of landmarks feasible even on standard personal computers.

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