Crebbp Loss Drives Small Cell Lung Cancer and Increases Sensitivity to HDAC Inhibition

Cancer Discovery - Tập 8 Số 11 - Trang 1422-1437 - 2018
Deshui Jia1, Arnaud Augert1, Dong Wook Kim2, Emily Eastwood1, Nan Wu1, Ali H. Ibrahim1, Kee‐Beom Kim2, Colin T. Dunn2, Smitha P.S. Pillai3, Adi F. Gazdar4, Hamid Bolouri1, Kwon-Sik Park2, David MacPherson1,5
11Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington.
22Department of Microbiology, Immunology, and Cancer Biology, University of Virginia School of Medicine, Charlottesville, Virginia.
33Division of Comparative Medicine, Fred Hutchinson Cancer Research Center, Seattle, Washington.
44The University of Texas Southwestern Medical Center, Hamon Center for Therapeutic Oncology and Department of Pathology, Dallas, Texas.
55Department of Genome Sciences, University of Washington, Seattle, Washington.

Tóm tắt

Abstract CREBBP, encoding an acetyltransferase, is among the most frequently mutated genes in small cell lung cancer (SCLC), a deadly neuroendocrine tumor type. We report acceleration of SCLC upon Crebbp inactivation in an autochthonous mouse model. Extending these observations beyond the lung, broad Crebbp deletion in mouse neuroendocrine cells cooperated with Rb1/Trp53 loss to promote neuroendocrine thyroid and pituitary carcinomas. Gene expression analyses showed that Crebbp loss results in reduced expression of tight junction and cell adhesion genes, including Cdh1, across neuroendocrine tumor types, whereas suppression of Cdh1 promoted transformation in SCLC. CDH1 and other adhesion genes exhibited reduced histone acetylation with Crebbp inactivation. Treatment with the histone deacetylase (HDAC) inhibitor Pracinostat increased histone acetylation and restored CDH1 expression. In addition, a subset of Rb1/Trp53/Crebbp-deficient SCLC exhibited exceptional responses to Pracinostat in vivo. Thus, CREBBP acts as a potent tumor suppressor in SCLC, and inactivation of CREBBP enhances responses to a targeted therapy. Significance: Our findings demonstrate that CREBBP loss in SCLC reduces histone acetylation and transcription of cellular adhesion genes, while driving tumorigenesis. These effects can be partially restored by HDAC inhibition, which exhibited enhanced effectiveness in Crebbp-deleted tumors. These data provide a rationale for selectively treating CREBBP-mutant SCLC with HDAC inhibitors. Cancer Discov; 8(11); 1422–37. ©2018 AACR. This article is highlighted in the In This Issue feature, p. 1333

Từ khóa


Tài liệu tham khảo

George, 2015, Comprehensive genomic profiles of small cell lung cancer, Nature, 524, 47, 10.1038/nature14664

Rudin, 2012, Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer, Nat Genet, 44, 1111, 10.1038/ng.2405

Augert, 2017, Small cell lung cancer exhibits frequent inactivating mutations in the histone methyltransferase KMT2D/MLL2: CALGB 151111 (Alliance), J Thor Oncol, 12, 704, 10.1016/j.jtho.2016.12.011

Gazdar, 2017, Small-cell lung cancer: what we know, what we need to know and the path forward, Nat Rev Cancer, 17, 725, 10.1038/nrc.2017.87

Zehir, 2017, Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients, Nat Med, 23, 703, 10.1038/nm.4333

Peifer, 2012;, Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer, Nat Genet, 10.1038/ng.2396

Creyghton, 2010, Histone H3K27ac separates active from poised enhancers and predicts developmental state, PNAS, 107, 21931, 10.1073/pnas.1016071107

Jin, 2011, Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation, EMBO J, 30, 249, 10.1038/emboj.2010.318

Ito, 2001, p300/CBP-mediated p53 acetylation is commonly induced by p53-activating agents and inhibited by MDM2, EMBO J, 20, 1331, 10.1093/emboj/20.6.1331

Bereshchenko, 2002, Acetylation inactivates the transcriptional repressor BCL6, Nat Genet, 32, 606, 10.1038/ng1018

Mullighan, 2011, CREBBP mutations in relapsed acute lymphoblastic leukaemia, Nature, 471, 235, 10.1038/nature09727

The Cancer Genome Atlas Research Network, 2014, Comprehensive molecular characterization of urothelial bladder carcinoma, Nature

Pasqualucci, 2011, Inactivating mutations of acetyltransferase genes in B-cell lymphoma, Nature, 471, 189, 10.1038/nature09730

Kang-Decker, 2004, Loss of CBP causes T cell lymphomagenesis in synergy with p27Kip1 insufficiency, Cancer Cell, 5, 177, 10.1016/S1535-6108(04)00022-4

Zhang, 2017, The CREBBP acetyltransferase is a haploinsufficient tumor suppressor in B-cell lymphoma, Cancer Discov, 7, 322, 10.1158/2159-8290.CD-16-1417

Jiang, 2017, CREBBP inactivation promotes the development of HDAC3-dependent lymphomas, Cancer Discov, 7, 38, 10.1158/2159-8290.CD-16-0975

Horton, 2017, Early loss of Crebbp confers malignant stem cell properties on lymphoid progenitors, Nat Cell Biol, 19, 1093, 10.1038/ncb3597

Kim, 2016, Genetic requirement for Mycl and efficacy of RNA Pol I inhibition in mouse models of small cell lung cancer, Genes Dev, 30, 1289, 10.1101/gad.279307.116

Meuwissen, 2003, Induction of small cell lung cancer by somatic inactivation of both Trp53 and Rb1 in a conditional mouse model, Cancer Cell, 4, 181, 10.1016/S1535-6108(03)00220-4

Gazdar, 2015, The comparative pathology of genetically engineered mouse models for neuroendocrine carcinomas of the lung, J Thorac Oncol, 10, 553, 10.1097/JTO.0000000000000459

Sutherland, 2011, Cell of origin of small cell lung cancer: inactivation of Trp53 and Rb1 in distinct cell types of adult mouse lung, Cancer Cell, 19, 754, 10.1016/j.ccr.2011.04.019

Kim, 2011, Ascl1 (Mash1) defines cells with long-term neurogenic potential in subgranular and subventricular zones in adult mouse brain, PLoS One, 6, e18472, 10.1371/journal.pone.0018472

Jacks, 1992, Effects of an Rb mutation in the mouse, Nature, 359, 295, 10.1038/359295a0

Tsai, 2002, ARF mutation accelerates pituitary tumor development in Rb± mice, Proc Natl Acad Sci U S A, 99, 16865, 10.1073/pnas.262499599

Williams, 1994, Cooperative tumorigenic effects of germline mutations in Rb and p53, Nat Genet, 7, 480, 10.1038/ng0894-480

Harvey, 1995, Mice deficient in both p53 and Rb develop tumors primarily of endocrine origin, Cancer Res, 55, 1146

Subramanian, 2005, Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles, Proc Natl Acad Sci U S A, 102, 15545, 10.1073/pnas.0506580102

Liberzon, 2015, The molecular signatures database (MSigDB) hallmark gene set collection, Cell Syst, 1, 417, 10.1016/j.cels.2015.12.004

Robinson, 2010, edgeR: a Bioconductor package for differential expression analysis of digital gene expression data, Bioinformatics, 26, 139, 10.1093/bioinformatics/btp616

Shibue, 2017, EMT, CSCs, and drug resistance: the mechanistic link and clinical implications, Nat Rev Clin Oncol, 10.1038/nrclinonc.2017.44

Kuo, 2015, Formation of a neurosensory organ by epithelial cell slithering, Cell, 163, 394, 10.1016/j.cell.2015.09.021

Novotny-Diermayr, 2011, Pharmacodynamic evaluation of the target efficacy of SB939, an oral HDAC inhibitor with selectivity for tumor tissue, Mol Cancer Ther, 10, 1207, 10.1158/1535-7163.MCT-11-0044

Polley, 2016, Small cell lung cancer screen of oncology drugs, investigational agents, and gene and microRNA expression, J Natl Cancer Inst, 108

Ciriello, 2015, Comprehensive molecular portraits of invasive lobular breast cancer, Cell, 163, 506, 10.1016/j.cell.2015.09.033

Cancer Genome Atlas Research Network, 2014, Comprehensive molecular characterization of gastric adenocarcinoma, Nature, 513, 202, 10.1038/nature13480

Al-Ahmadie, 2016, Frequent somatic CDH1 loss-of-function mutations in plasmacytoid variant bladder cancer, Nat Genet, 48, 356, 10.1038/ng.3503

Stewart, 2017, Dynamic variations in epithelial-to-mesenchymal transition (EMT), ATM, and SLFN11 govern response to PARP inhibitors and cisplatin in small cell lung cancer, Oncotarget, 10.18632/oncotarget.15338

Semenova, 2016, Transcription factor NFIB is a driver of small cell lung cancer progression in mice and marks metastatic disease in patients, Cell Rep, 16, 631, 10.1016/j.celrep.2016.06.020

Tam, 2013, The epigenetics of epithelial-mesenchymal plasticity in cancer, Nat Med, 19, 1438, 10.1038/nm.3336

Nieto, 2016, Emt: 2016, Cell, 166, 21, 10.1016/j.cell.2016.06.028

Canadas, 2014, Targeting epithelial-to-mesenchymal transition with Met inhibitors reverts chemoresistance in small cell lung cancer, Clin Cancer Res, 20, 938, 10.1158/1078-0432.CCR-13-1330

Ogiwara, 2016;, Targeting p300 addiction in CBP-deficient cancers causes synthetic lethality via apoptotic cell death due to abrogation of MYC expression, Cancer Discov, 10.1158/2159-8290.CD-15-0754

Lasko, 2017, Discovery of a selective catalytic p300/CBP inhibitor that targets lineage-specific tumours, Nature, 550, 128, 10.1038/nature24028

DuPage, 2009, Conditional mouse lung cancer models using adenoviral or lentiviral delivery of Cre recombinase, Nat Protoc, 4, 1064, 10.1038/nprot.2009.95

Shechter, 2007, Extraction, purification and analysis of histones, Nat Protoc, 2, 1445, 10.1038/nprot.2007.202

Anderson, 2015, Initiation and characterization of small cell lung cancer patient-derived xenografts from ultrasound-guided transbronchial needle aspirates, PLoS One, 10, e0125255, 10.1371/journal.pone.0125255

Trapnell, 2009, TopHat: discovering splice junctions with RNA-Seq, Bioinformatics, 25, 1105, 10.1093/bioinformatics/btp120

Trapnell, 2013, Differential analysis of gene regulation at transcript resolution with RNA-seq, Nat Biotechnol, 31, 46, 10.1038/nbt.2450

Li, 2010, Fast and accurate long-read alignment with Burrows-Wheeler transform, Bioinformatics, 26, 589, 10.1093/bioinformatics/btp698

Heinz, 2010, Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities, Mol Cell, 38, 576, 10.1016/j.molcel.2010.05.004