Morphological and molecular evidence reveals three new species of Lithocarpus (Fagaceae) from Bidoup-Nui Ba National Park, Vietnam.

PhytoKeys - Tập 186 - Trang 73-92 - 2021
Nguyen Van Ngoc1, Hoang Thi Binh1, Ai Nagahama2, Shuichiro Tagane3, Hironori Toyama4, Ayumi Matsuo5, Yoshihisa Suyama5, Tetsukazu Yahara2,6
1Faculty of Biology, Dalat University, 01 - Phu Dong Thien Vuong, Dalat, Vietnam Dalat University Dalat Vietnam.
2Faculty of Science, Kyushu University, 744 Motooka, Fukuoka, 819-0395, Japan Kyushu University Fukuoka Japan.
3The Kagoshima University Museum, Kagoshima University, 1-21-30 Korimoto, Kagoshima, 890-0065, Japan Kagoshima University Kagoshima Japan.
4Biodiversity Division, National Institute for Environmental Studies, Tsukuba, Ibaraki, 305-8506, Japan Biodiversity Division, National Institute for Environmental Studies Ibaraki Japan.
5Kawatabi Field Science Center, Graduate School of Agricultural Science, Tohoku University, 232-3 Yomogida, Naruko-onsen, Osaki, Miyagi 989-6711, Japan Tohoku University Miyagi Japan.
6Kyushu Open University, 744 Motooka, Fukuoka, 819-0395, Japan Kyushu Open University Fukuoka Japan.

Tóm tắt

Three new species, Lithocarpusbidoupensis Ngoc & Tagane, L.congtroiensis Ngoc & Yahara, and L.hongiaoensis Ngoc & Binh are described from Bidoup-Nui Ba National Park, Central Highland of Vietnam. Morphological analyses and Maximum likelihood tree based on genome-wide SNPs support the distinction of those species from the previously known taxa in the region. The three new species are considered to be endemic to the Bidoup-Nui Ba National Park and the preliminary conservation status for each species is evaluated as Critically Endangered.

Từ khóa

#Fagales #Lam Dong Province #MIG-seq #phylogeny #taxonomy

Tài liệu tham khảo

Ban NT. (2005) Fagaceae. In: Ban NT. (Ed.) Checklist of plant species of Vietnam 2.Agricultural Publishing House, Hanoi, 227–271.

Ban NT, Ly DT, Tap N, Dung VV, Thin NN, Tien VN, Khoi KN. (2007) Vietnam Red Data Book Part II. Plants. Natural Sciences and Technology Publishers, Hanoi, 563 pp.

Bidoup-Nui Ba National Park (2021 onwards) An overview of Bidoup-Nui Ba National Park. http://bidoupnuiba.gov.vn/en/introduction-menu.html [accessed 15.03.2021]

Binh HT, Ngoc NV, Tagane S, Toyama H, Mase K, Mitsuyuki C, Strijk JS, Suyama Y, Yahara T. (2018a) A taxonomic study of Quercuslangbianensis complex based on morphology and DNA barcodes of classic and next generation sequences. PhytoKeys 95: 37–70. 10.3897/phytokeys.95.21126

Binh HT, Ngoc NV, Bon TN, Tagane S, Suyama Y, Yahara T. (2018b) A new species and two new records of Quercus (Fagaceae) from northern Vietnam. PhytoKeys 92: 1–15. 10.3897/phytokeys.92.21831

Binh HT, Ngoc NV, Tai VA, Son HT, Tagane S, Yahara T. (2018c) Quercustrungkhanhensis (Fagaceae), a New Species from Cao Vit Gibbon Conservation Area, Cao Bang Province, northeastern Vietnam. Acta Phytotaxonomica et Geobotanica 69(1): 53–61.

Binh HT, Ngoc NV, Son HT, Tagane S, Yahara T. (2021) Quercusngochoaensis (Fagaceae), a new species from Ba Vi National Park, northern, Vietnam. Phytotaxa 516(3): 283–288. 10.11646/phytotaxa.516.3.7

Bolger AM, Lohse M, Usadel B. (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30(15): 2114–2120. 10.1093/bioinformatics/btu170

Camus A. (1931) Sur quelques genres de Fagacees. Riviera Scientifique 18: 37–42.

Camus A. (1938) Fagacées nouvelles de l’asie orientale. Notulae systematicae (Paris) 6(4): 178–185.

Camus A. (1942) Fagacées asiatiques nouvelles. Bulletin du Muséum National d’Histoire Naturelle Series II 14(5): 357–360.

Camus A. (1943) Lithocarpus (Fagacées) nouveaux d’Annam. Bulletin de la Société Botanique de France 90(4–6): 84–85. 10.1080/00378941.1943.10837497

Camus A. (1945) Espèces et variétés nouvelles du genre Lithocarpus. Bulletin de la Société Botanique de France 92(4–6): 82–84. 10.1080/00378941.1945.10834409

Camus A. (1948) Les Chênes: Monographie du genres Quercus et Lithocarpus. Chênes Atlas Volume 3. Paul Lechevalier & fils, 1314 pp.

Catchen JM, Amores A, Hohenlohe PA, Cresko WA, Postlethwait JH. (2011) Stacks: build- ing and genotyping loci de novo from short-read sequences. G3: Genes, Genomes. Genetics 1: 171–182. 10.1534/g3.111.000240

Catchen JM, Hohenlohe PA, Bassham S, Amores A, Cresko WA. (2013) Stacks: An analysis tool set for population genomics. Molecular Ecology 22(11): 3124–3140. 10.1111/mec.12354

Darriba D, Taboada GL, Doallo R, Posada D. (2012) jModelTest 2: More models, new heuristics and parallel computing. Nature Methods 9(8): e772. 10.1038/nmeth.2109

Doyle JJ, Doyle JL. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11–15.

Dung LV. (2005) Fagacae in Bidoup-Nui Ba National Park. Published by author, Lam Dong, 68 pp.

Hickel R, Camus A. (1930) Fagaceae. In: Lecomte PH, Gagnepain F. (Eds) Flore Générale de l’Indo-Chine 5.Masson, Paris, 962–1007.

Ho PH. (2003) An Illustrated Flora of Vietnam Vol. 2. Young Publishing House, Ho Chi Minh City, 951 pp.

Huang CC, Chang YT, Bartholomew B. (1999) Fagaceae. In: Wu ZY, Raven PH. (Eds) Flora of China 4.Science Press, Beijing & Missouri Botanical Garden Press, Saint Louis, 314–400.

IUCN (2012) IUCN Red List Categories and Criteria: Version 3.1. 2nd edn. Gland, Switzerland and Cambridge, UK, [iv +] 32 pp.

Linh DT, Thanh NT, Cuong NT, Hai DV, Hoan DT. (2013) Basis of taxonomy for Lithocarpus Blume (Fagaceae Dumort.) in Vietnam. Proceeding of the 5th National conference on Ecology and Biological resources. Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Hanoi, 127–131.

Ngoc NV, Dung LV, Tagane S, Binh HT, Son HT, Trung VQ, Yahara T. (2016) Lithocarpusdahuoaiensis (Fagaceae), a new species from Lam Dong Province, Vietnam. PhytoKeys 69: 23–30. 10.3897/phytokeys.69.9821

Ngoc NV, Hung NV, Hoang Thi B, Tagane S, Toyama H, Son HT, Ha TV, Yahara T. (2018) Lithocarpusvuquangensis (Fagaceae), a new species from Vu Quang National Park, Vietnam. PhytoKeys 95: 15–25. 10.3897/phytokeys.95.21832

Okabe N, Yahara T, Tagane S, Mitsuyuki C, Matsuo A, Sasaki T, Moritsuka E, Fuse K, Shimizu-Kaya U, Sang JA, Pungga RS. (2021) A new species of Actinodaphne (Lauraceae), A. lambirensis from Sarawak, Malaysia, and an analysis of its phylogenetic position using MIG- seq and ITS sequences. Acta Phytotaxonomica et Geobotanica 72(1): 43–59. 10.18942/apg.202005

Phengklai C. (2008) Fagaceae. In: Santisuk T, Larsen K. (Eds) Flora of Thailand 9(3).The Forest Herbarium, Bangkok, 179–410.

RCore Team (2021) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. https://www.R-project.org/

RStudio Team (2021) RStudio: Integrated Development for R. RStudio, PBC, Boston, MA. http://www.rstudio.com/

Schneider CA, Rasband WS, Eliceiri KW. (2012) NIH Image to ImageJ: 25 years of image analysis. Nature Methods 9(7): 671–675. 10.1038/nmeth.2089

Stamatakis A. (2014) RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics (Oxford, England) 30(9): 1312–1313. 10.1093/bioinformatics/btu033

Suyama Y, Matsuki Y. (2015) MIG-seq: An effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform. Scientific Reports 5: e16968. 10.1038/srep16963

Suyama Y, Hirota SK, Matsuo A, Tsunamoto Y, Mitsuyuki C, Shimura A, Okano K. (2021) . Complementary combination of multiplex high-throughput DNA sequencing for molecular phylogeny. Ecological Research: 1–11. 10.1111/1440-1703. 12270

Tagane S, Dang VS, Ngoc NV, Binh HT, Komada N, Wai JS, Naiki A, Nagamasu H, Toyama H, Yahara T. (2017) Macrosolenbidoupensis (Loranthaceae), a new species from Bidoup Nui Ba National Park, southern Vietnam. PhytoKeys 80: 113–120. 10.3897/phytokeys.80.13338

Tagane S, Ngoc NV, Binh HT, Nagahama A, Zhang M, Cuong TQ, Son LV, Dang VS, Toyama H, Komada N, Nagamasu H, Yahara T. (2020) Fifteen new species of angiosperms from Bidoup-Nui Ba National Park, southern highlands of Vietnam. Acta Phytotaxonomica et Geobotanica 71(3): 201–229. 10.18942/apg.202002

Takata K, Taninaka H, Nonaka M, Iwase F, Kikuchi T, Suyama Y, Nagai S, Yasuda N. (2019) Multiplexed ISSR genotyping by sequencing distinguishes two precious coral species (Anthozoa: Octocorallia: Coralliidae) that share a mitochondrial haplotype. PeerJ 7: e7769. 10.7717/peerj.7769

Toyama H, Kajisa T, Tagane S, Mase K, Chhang P, Samreth V, Ma V, Sokh H, Ichihasi R, Onoda Y, Mizoue N, Yahara T. (2015) Effects of logging and recruitment on community phylogenetic structure in 32 permanent forest plots of Kampong Thom, Cambodia. Philosophical Transactions of the Royal Society B: Biological Sciences 370(1662): 1–13. 10.1098/rstb.2014.0008

Tukey JW. (1953) The problem of multiple comparisons. Unpublished manuscript, Princeton University.

Vuong DH, Xia NH. (2014) Two new species in Castanopsis (Fagaceae) from Vietnam and their leaf cuticular features. Phytotaxa 186(1): 29–41. 10.11646/phytotaxa.186.1.2

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PhytoKeys

Tập 186

73-92

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