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Hairpin-based state machine and conformational addressing: Design and experiment
Springer Science and Business Media LLC - Tập 4 - Trang 103-126 - 2005
Atsushi Kameda, Masahito Yamamoto, Hiroki Uejima, Masami Hagiya, Kensaku Sakamoto, Azuma Ohuchi
In this paper, we propose a new architecture for a multi-state DNA machine whose conformation of repeated hairpin structures changes sequentially in response to input oligomers. As an application of the machine, we also propose molecular memory in which the machine is used as a memory unit. Addressing in the memory is realized through state transitions of the machine. We then describe a method for...... hiện toàn bộ
Distance-based affective states in cellular automata pedestrian simulation
Springer Science and Business Media LLC - - Trang 1-13
Bandini, Stefania, Briola, Daniela, Dennunzio, Alberto, Gasparini, Francesca, Giltri, Marta, Vizzari, Giuseppe
Cellular Automata have successfully been successfully applied to the modeling and simulation of pedestrian and crowd dynamics. In particular, the investigated scenarios have often been focused on the evaluation of medium–high population density situations, in which the motivation of pedestrians to reach a certain location overcomes their tendency to naturally respect proxemic distances. The global...... hiện toàn bộ
On string languages generated by spiking neural P systems with exhaustive use of rules
Springer Science and Business Media LLC - Tập 7 - Trang 535-549 - 2008
Xingyi Zhang, Xiangxiang Zeng, Linqiang Pan
We continue the study of (extended) spiking neural P systems with exhaustive use of rules by considering these computing devices as language generators. Specifically, a step is associated with a symbol according to the number of spikes emitted by the output neuron and the sequence of these symbols associated with a halting computation constitutes a string. Two cases are considered: one of them int...... hiện toàn bộ
Cellular automata-based systems with fault-tolerance
Springer Science and Business Media LLC - Tập 11 - Trang 673-685 - 2012
Luděk Žaloudek, Lukáš Sekanina
One of the new computing paradigms which could overcome some of the problems of existing computing architectures may be cellular computing. In the investigated scenario, cellular automata-based systems are intended for yet-unknown methods of fabrication and as such, they need to address the problem of fault-tolerance in a way which is not tightly connected to used technology. Our goal is to reach ...... hiện toàn bộ
On Cellular Automata rules of molecular arrays
Springer Science and Business Media LLC - Tập 11 Số 2 - Trang 311-321 - 2012
Satyajit Sahu, Hiroshi Oono, Subrata Ghosh, Anirban Bandyopadhyay, Daisuke Fujita, Ferdinand Peper, Teijiro Isokawa, Ranjit Pati
Comparison of synchronous and asynchronous parallelization of extreme surrogate-assisted multi-objective evolutionary algorithm
Springer Science and Business Media LLC - - 2022
Tomohiro Harada, Misaki Kaidan, Ruck Thawonmas
AbstractThis paper investigates the integration of a surrogate-assisted multi-objective evolutionary algorithm (MOEA) and a parallel computation scheme to reduce the computing time until obtaining the optimal solutions in evolutionary algorithms (EAs). A surrogate-assisted MOEA solves multi-objective optimization problems while estimating the evaluation of solution...... hiện toàn bộ
Lattice-based versus lattice-free individual-based models: impact on coexistence in competitive communities
Springer Science and Business Media LLC - Tập 18 - Trang 855-864 - 2019
Aisling J. Daly, Ward Quaghebeur, Tim M. A. Depraetere, Jan M. Baetens, Bernard De Baets
Individual-based modelling is an increasingly popular framework for modelling biological systems. Many of these models represent space as a lattice, thus imposing unrealistic limitations on the movement of the modelled individuals. We adapt an existing model of three competing species by using a lattice-free approach, thereby improving the realism of the spatial dynamics. We retrieve the same qual...... hiện toàn bộ
A multi-objective feature selection method based on bacterial foraging optimization
Springer Science and Business Media LLC - Tập 20 - Trang 63-76 - 2019
Ben Niu, Wenjie Yi, Lijing Tan, Shuang Geng, Hong Wang
Feature selection plays an important role in data preprocessing. The aim of feature selection is to recognize and remove redundant or irrelevant features. The key issue is to use as few features as possible to achieve the lowest classification error rate. This paper formulates feature selection as a multi-objective problem. In order to address feature selection problem, this paper uses the multi-o...... hiện toàn bộ
Preface
Springer Science and Business Media LLC - Tập 20 - Trang 191-192 - 2021
Ian McQuillan, Shinnosuke Seki
Physical modeling of biomolecular computers: Models, limitations, and experimental validation
Springer Science and Business Media LLC - - 2004
John A. Rose, Akira Suyama
A principal challenge facing the development and scaling of biomolecular computers is the design of physically well-motivated, experimentally validated simulation tools. In particular, accurate simulations of computational behavior are needed to establish the feasibility of new architectures, and to guide process implementation, by aiding strand design. Key issues accompanying simulator developmen...... hiện toàn bộ
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