genepop’007: a complete re‐implementation of the genepop software for Windows and Linux Tập 8 Số 1 - Trang 103-106 - 2008
François Rousset
AbstractThis note summarizes developments of the genepop software since its first description in 1995, and in particular those new to version 4.0: an extended input format, several estimators of neighbourhood size under isolation by distance, new estimators and confidence intervals for null allele frequency, and less important extensions to previ...... hiện toàn bộ
Clumpak: a program for identifying clustering modes and packaging population structure inferences across K Tập 15 Số 5 - Trang 1179-1191 - 2015
Naama M. Kopelman, Jonathan Mayzel, Mattias Jakobsson, Noah A. Rosenberg, Itay Mayrose
AbstractThe identification of the genetic structure of populations from multilocus genotype data has become a central component of modern population‐genetic data analysis. Application of model‐based clustering programs often entails a number of steps, in which the user considers different modelling assumptions, compares results across different predetermined values...... hiện toàn bộ
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies Tập 20 Số 1 - Trang 348-355 - 2020
Dong Zhang, Fangluan Gao, Ivan Jakovlić, Hong Zou, Jin Zhang, Wen X. Li, Gui T. Wang
AbstractMultigene and genomic data sets have become commonplace in the field of phylogenetics, but many existing tools are not designed for such data sets, which often makes the analysis time‐consuming and tedious. Here, we present PhyloSuite, a (cross‐platform, open‐source, stand‐alone Python graphical user interface) user‐friendly workflow desk...... hiện toàn bộ
COLONY: a program for parentage and sibship inference from multilocus genotype data Tập 10 Số 3 - Trang 551-555 - 2010
Owen Jones, Jinliang Wang
AbstractPedigrees, depicting genealogical relationships between individuals, are important in several research areas. Molecular markers allow inference of pedigrees in wild species where relationship information is impossible to collect by observation. Marker data are analysed statistically using methods based on Mendelian inheritance rules. There are numerous comp...... hiện toàn bộ
pophelper: an R package and web app to analyse and visualize population structure Tập 17 Số 1 - Trang 27-32 - 2017
Roger M. Francis
AbstractThepophelper rpackage and web app are software tools to aid in population structure analyses. They can be used for the analyses and visualization of output generated from population assignment programs such asadmixture,structureandtess. Some of the functions include parsing output r...... hiện toàn bộ
coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients Tập 11 Số 1 - Trang 141-145 - 2011
Jinliang Wang
AbstractThe software package coancestry implements seven relatedness estimators and three inbreeding estimators to estimate relatedness and inbreeding coefficients from multilocus genotype data. Two likelihood estimators that allow for inbred individuals and account for genotyping errors are for the first time included in this user‐friendly progr...... hiện toàn bộ
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer Tập 11 Số 6 - Trang 1002-1011 - 2011
G.P. Robideau, Arthur W. A. M. de Cock, Michael D. Coffey, Hermann Voglmayr, Henk J. Brouwer, Kanak Bala, David W. Chitty, N. L. Désaulniers, Quinn Eggertson, Claire M. M. Gachon, Chia-Hui Hu, Frithjof C. Küpper, Tara L. Rintoul, Ehab Sarhan, E.C.P. Verstappen, Yonghong Zhang, P.J.M. Bonants, Jean B. Ristaino, C. André Lévesque
AbstractOomycete species occupy many different environments and many ecological niches. The genera Phytophthora and Pythium for example, contain many plant pathogens which cause enormous damage to a wide range of plant species. Proper identification to the species level is a critical first step in any investigat...... hiện toàn bộ