Molecular Ecology Resources
SCIE-ISI SCOPUS (2008-2025)
1755-098X
1755-0998
Anh Quốc
Cơ quản chủ quản: WILEY , Wiley-Blackwell Publishing Ltd
Lĩnh vực:
Ecology, Evolution, Behavior and SystematicsBiotechnologyGenetics
Các bài báo tiêu biểu
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
Tập 10 Số 3 - Trang 564-567 - 2010
AbstractWe present here a new version of the Arlequin program available under
three different forms: a Windows graphical version (Winarl35), a console version
of Arlequin (arlecore), and a specific console version to compute summary
statistics (arlsumstat). The command‐line versions run under both Linux and
Windows. The main innovations of the new version include enhanced outputs in XML
format, th...
Tập 8 Số 1 - Trang 103-106 - 2008
AbstractThis note summarizes developments of the genepop software since its
first description in 1995, and in particular those new to version 4.0: an
extended input format, several estimators of neighbourhood size under isolation
by distance, new estimators and confidence intervals for null allele frequency,
and less important extensions to previous options. genepop now runs under Linux
as well as...
Tập 15 Số 5 - Trang 1179-1191 - 2015
AbstractThe identification of the genetic structure of populations from
multilocus genotype data has become a central component of modern
population‐genetic data analysis. Application of model‐based clustering programs
often entails a number of steps, in which the user considers different modelling
assumptions, compares results across different predetermined values of the
number of assumed cluster...
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
Tập 20 Số 1 - Trang 348-355 - 2020
AbstractMultigene and genomic data sets have become commonplace in the field of
phylogenetics, but many existing tools are not designed for such data sets,
which often makes the analysis time‐consuming and tedious. Here, we present
PhyloSuite, a (cross‐platform, open‐source, stand‐alone Python graphical user
interface) user‐friendly workflow desktop platform dedicated to streamlining
molecular seq...
COLONY: a program for parentage and sibship inference from multilocus genotype data
Tập 10 Số 3 - Trang 551-555 - 2010
AbstractPedigrees, depicting genealogical relationships between individuals, are
important in several research areas. Molecular markers allow inference of
pedigrees in wild species where relationship information is impossible to
collect by observation. Marker data are analysed statistically using methods
based on Mendelian inheritance rules. There are numerous computer programs
available to conduc...
Tập 8 Số 1 - Trang 92-94 - 2008
Abstract msatcommander is a platform‐independent program designed to search for
microsatellite arrays, design primers, and tag primers using an automated
routine. msatcommander accepts as input DNA sequence data in single‐sequence or
concatenated, fasta‐formatted files. Search data and locus‐specific primers are
written to comma‐separated value files for subsequent use in spreadsheet or
database p...
Tập 17 Số 1 - Trang 27-32 - 2017
AbstractThepophelper rpackage and web app are software tools to aid in
population structure analyses. They can be used for the analyses and
visualization of output generated from population assignment programs such
asadmixture,structureandtess. Some of the functions include parsing output run
files to tabulate data, estimatingKusing the Evanno method, generating files
forclumppand functionality to...
Tập 11 Số 1 - Trang 141-145 - 2011
AbstractThe software package coancestry implements seven relatedness estimators
and three inbreeding estimators to estimate relatedness and inbreeding
coefficients from multilocus genotype data. Two likelihood estimators that allow
for inbred individuals and account for genotyping errors are for the first time
included in this user‐friendly program for PCs running Windows operating system.
A simul...
The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem
Tập 16 Số 3 - Trang 608-627 - 2016
AbstractInferences of population structure and more precisely the identification
of genetically homogeneous groups of individuals are essential to the fields of
ecology, evolutionary biology and conservation biology. Such population
structure inferences are routinely investigated via the program structure
implementing a Bayesian algorithm to identify groups of individuals at
Hardy–Weinberg and lin...
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
Tập 11 Số 6 - Trang 1002-1011 - 2011
AbstractOomycete species occupy many different environments and many ecological
niches. The genera Phytophthora and Pythium for example, contain many plant
pathogens which cause enormous damage to a wide range of plant species. Proper
identification to the species level is a critical first step in any
investigation of oomycetes, whether it is research driven or compelled by the
need for rapid and ...