uvsF, the large subunit of replication factor C in Aspergillus nidulans, is essential for DNA replication, functions in UV repair and is upregulated in response to MMS-induced DNA damage

Fungal Genetics and Biology - Tập 45 - Trang 1227-1234 - 2008
Etta Kafer1, Suhn-Kee Chae2
1Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada V5A 1S6
2Division of Life Sciences and Center for Biomedicinal Resources, Paichai University, Daejeon 302-735, South Korea

Tài liệu tham khảo

Aboussekhra, 1995, Mammalian DNA nucleotide excision repair reconstituted with purified protein components, Cell, 80, 859, 10.1016/0092-8674(95)90289-9 Amin, 1999, Dominant mutations in three different subunits of replication factor C suppress replication defects in yeast PCNA mutants, Genetics, 153, 1617, 10.1093/genetics/153.4.1617 Bellaoui, 2003, Elg1 forms an alternative RFC important for DNA replication and genome integrity, EMBO J., 22, 4304, 10.1093/emboj/cdg406 Bork, 1997, A superfamily of conserved domains in DNA damage responsive cell cycle checkpoint proteins, FASEB J., 11, 68, 10.1096/fasebj.11.1.9034168 Bowman, 2004, Structural analysis of a eukaryotic sliding DNA clamp–clamp loader complex, Nature, 429, 724, 10.1038/nature02585 Chae, 1993, uvsI mutants defective in UV mutagenesis define a fourth epistatic group of uvs genes in Aspergillus, Curr. Genet., 24, 67, 10.1007/BF00324667 Chae, 1997, Two uvs genes of Aspergillus nidulans with different functions in error-prone repair: uvsI, active in mutation-specific reversion and uvsC, a recA homolog, required for UV mutagenesis, Mol. Gen. Genet., 254, 643, 10.1007/s004380050462 Chamankhah, 1998, Isolation of hMRE11B: failure to complement yeast mre11 defects due to species-specific protein interactions, Gene, 225, 107, 10.1016/S0378-1119(98)00530-7 Cho, 2003, Identification and cloning of jipA encoding a polypeptide that interacts with a homolog of yeast Rad6, UVSJ, in Aspergillus nidulans, J. Microbiol. (Korea), 41, 46 Cohen-Fix, 2001, The making and breaking of sister chromatid cohesion, Cell, 107, 136 Cullman, 1995, Characterization of the five replication factor C genes of Saccharomyces cerevisiae, Mol. Cell. Biol., 15, 4661, 10.1128/MCB.15.9.4661 Debets, 1986, Isolation of small protoplasts from Aspergillus niger, Fungal Genet. Newsl., 33, 24 Denison, 1993, Mutation in the bimD gene of Aspergillus nidulans confers a conditional mitotic block and sensitivity to DNA damaging agents, Genetics, 134, 1085, 10.1093/genetics/134.4.1085 De Souza, 1999, Checkpoint defects leading to premature mitosis also cause endoreplication of DNA in Aspergillus nidulans, Mol. Biol. Cell, 10, 3662, 10.1091/mbc.10.11.3661 Dutton, 1997, StuAp is a sequence-specific transcription factor that regulates developmental complexity in Aspergillus nidulans, EMBO J., 16, 5710, 10.1093/emboj/16.18.5710 Edgell, 1997, Archaea and the origin(s) of DNA replication proteins, Cell, 89, 995, 10.1016/S0092-8674(00)80285-8 Evangelista, 2000, A role for myosin I in actin assembly through interactions with Vrp1p, Bee1p, and the Arp2/3 complex, J. Cell Biol., 148, 353, 10.1083/jcb.148.2.353 Gary, 1997, The DNA repair endonuclease XPG binds to proliferating cell nuclear antigen (PCNA) and shares sequence elements with the PCNA-binding regions of FEN-1 and cyclin-dependent kinase inhibitor p21, J. Biol. Chem., 272, 24522, 10.1074/jbc.272.39.24522 Goldman, 2004, Aspergillus nidulans as a model system to characterize the DNA damage response in eukaryotes, Fung. Genet. Biol., 41, 428, 10.1016/j.fgb.2003.12.001 Goldman, 2002, The DNA damage response in filamentous fungi, Fung. Genet. Biol., 35, 183, 10.1006/fgbi.2002.1344 Green, 2000, A novel Rad24 checkpoint protein complex closely related to replication factor C, Curr. Biol., 10, 39, 10.1016/S0960-9822(99)00263-8 Guenther, 1997, Crystal structure of the δ’ subunit of the clamp-loader complex of E. coli DNA polymerase III, Cell, 91, 335, 10.1016/S0092-8674(00)80417-1 Hill, 2001, Improved protocols for Aspergillus minimal medium: trace element and minimal medium stock solutions, Fungal Genet. Newsl., 48, 20 Hingorani, 2000, Sliding clamps: a (tail)ored fit, Curr. Biol., 10, R25, 10.1016/S0960-9822(99)00252-3 Inoue, 1999, DNA repair and specific-locus mutagenesis in Neurospora crassa, Mutat. Res., 437, 121, 10.1016/S1383-5742(99)00079-4 Ito, 1983, Transformation of intact cells treated with alkali cations, J. Bacteriol., 153, 163, 10.1128/jb.153.1.163-168.1983 James, 1999, nimO, an Aspergillus gene related to budding yeast Dbf4, is required for DNA synthesis and mitotic checkpoint control, J. Cell Sci., 112, 1313, 10.1242/jcs.112.9.1313 Jeong, 2000, The rpl16a gene for ribosomal protein L16A identified from an expressed sequence tags is differentially expressed during sexual development of Aspergillus nidulans, Fungal Genet. Biol., 31, 69, 10.1006/fgbi.2000.1233 Jeruzalmi, 2001, Crystal structure of the processivity clamp loader gamma (γ) complex of E. coli DNA polymerase III, Cell, 106, 429, 10.1016/S0092-8674(01)00463-9 Kafer, 1977, Meiotic and mitotic recombination in Aspergillus and its chromosomal aberrations, Adv. Genet., 19, 33, 10.1016/S0065-2660(08)60245-X Kafer, 1994, Phenotypic and epistatic grouping of hypo- and hyper-rec mus mutants in Aspergillus, Curr. Genet., 25, 223, 10.1007/BF00357166 Kafer, 1997, The uvsF gene region in Aspergillus nidulans codes for a protein with homology to DNA replication Factor C, Gene, 191, 155, 10.1016/S0378-1119(97)00052-8 Kafer, 1998, Toward repair pathways in Aspergillus nidulans, vol. 1, 477 Kafer, 1986, Genetic analysis of DNA repair in Aspergillus: evidence for different types of MMS-sensitive hyperrec mutants, Mutat. Res., 161, 119, 10.1016/0027-5107(86)90003-5 Kai, 2001, Fission yeast Rad17 associates with chromatin in response to aberrant genomic structures, Mol. Cell. Biol., 21, 3289, 10.1128/MCB.21.10.3289-3301.2001 Kim, 2003, Genome stability: a new member of the RFC family, Curr. Biol., 13, 873, 10.1016/j.cub.2003.10.048 Kruglyak, 2000, Regulation of adjacent yeast genes, Trends Genet., 16, 109, 10.1016/S0168-9525(99)01941-1 Levin, 2000, Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair, Curr. Biol., 10, 919, 10.1016/S0960-9822(00)00619-9 MacNeill, 2001, DNA replication: partners in the Okazaki two-step, Curr. Biol., 11, R842, 10.1016/S0960-9822(01)00500-0 May, 1985, Identification and functional analysis of beta-tubulin genes by site specific integrative transformation in Aspergillus nidulans, J. Cell Biol., 101, 712, 10.1083/jcb.101.3.712 McAlear, 1994, PCNA mutations suppress the cell cycle defect conferred by cdc44 mutations, Mol. Cell. Biol., 14, 4390 McAlear, 1996, The large subunit of replication factor C (Rfc1p/Cdc44p) is required for DNA replication and DNA repair in Saccharomyces cerevisiae, Genetics, 142, 65, 10.1093/genetics/142.1.65 Merrill, 1998, The RAD52 recombinational repair pathway is essential in pol30 (PCNA) mutants that accumulate small single-stranded fragments during DNA synthesis, Genetics, 148, 611, 10.1093/genetics/148.2.611 Morris, 1998, Nuclear migration, nucleokinesis and lissencephally, Trends Cell Biol., 8, 467, 10.1016/S0962-8924(98)01389-0 Mossi, 1998, Clamping down on clamps and clamp-loaders: The eukaryotic replication factor C, Eur. J. Biochem., 254, 209 O’Donnell, 2001, Clamp-loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC, Curr. Biol., 11, R935, 10.1016/S0960-9822(01)00559-0 Osmani, 1987, Regulation of the mRNA levels of nimA, a gene required for the G2-M transition in Aspergillus nidulans, J. Cell Biol., 104, 1495, 10.1083/jcb.104.6.1495 Osmani, 1997, Targets of checkpoints controlling mitosis: lessons from lower eukaryotes, Trends Cell Biol., 7, 283, 10.1016/S0962-8924(97)01086-6 Pan, 1995, Identification of the yeast nuclear gene for the mitochondrial homologue of bacterial ribosomal protein L16, Nucleic Acids Res., 23, 3673, 10.1093/nar/23.18.3673 Pontecorvo, 1953, The genetics of Aspergillus nidulans, Adv. Genet., 5, 141, 10.1016/S0065-2660(08)60408-3 Punt, 1995, The intergenic region between the divergently transcribed niiA and niaD genes of Aspergillus nidulans contains multiple NirA binding sites which act bidirectionally, Mol. Cell. Biol., 15, 5688, 10.1128/MCB.15.10.5688 Ronen, 2001, Human DNA repair genes, Environ. Mol. Mutagen., 37, 241, 10.1002/em.1033 Scott, 1982, Aspergillus nidulans—an organism for detecting a range of genetic damage, vol. 7, 447 Shiomi, 2000, ATP-dependent structural change of the eukaryotic clamp-loader protein, replication factor C, Proc. Natl. Acad. Sci. USA, 97, 14127, 10.1073/pnas.97.26.14127 Shivji, 1995, Nucleotide excision repair DNA synthesis by DNA polymerase epsilon in the presence of PCNA, RFC, and RPA, Biochemistry, 34, 5011, 10.1021/bi00015a012 Sikorski, 1989, A system of shuttle vectors and yeast host strains designed for efficient manipulations of DNA in Saccharomyces cerevisiae, Genetics, 122, 19, 10.1093/genetics/122.1.19 Thompson, 1994, CLUSTAL, W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673 Turner, 1999, The internal workings of a DNA polymerase clamp-loading machine, EMBO J., 18, 738, 10.1093/emboj/18.3.771 Van Driessche, 2005, Epistasis analysis with global transcriptional phenotypes, Nat. Genet., 37, 471, 10.1038/ng1545 van Heemst, 2001, BimD/SPO76 is at the interface of cell cycle progression, chromosome morphogenesis, and recombination, Proc. Natl. Acad. Sci. USA, 98, 6267, 10.1073/pnas.081088498 van Heemst, 1997, Cloning, sequencing, disruption and phenotypic analysis of uvsC, an Aspergillus nidulans homologue of yeast RAD51, Mol. Gen. Genet., 254, 654, 10.1007/s004380050463 Waga, 1994, Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro, Nature, 369, 207, 10.1038/369207a0 Waga, 1998, The DNA replication fork in eukaryotic cells, Annu. Rev. Biochem., 67, 721, 10.1146/annurev.biochem.67.1.721 Waring, 1989, Characterization of an inducible expression system in Aspergillus nidulans using alcA and tubulin-coding genes, Gene, 79, 119, 10.1016/0378-1119(89)90097-8 Weiland, 1997, Rapid procedure for the extraction of DNA from fungal spores and mycelia, Fungal Genet. Newsl., 44, 60 Wood, 2001, Human DNA repair genes, Science, 291, 1248, 10.1126/science.1056154 Yoon, 1995, The Aspergillus uvsH gene encodes a product homologous to yeast Rad18 and Neurospora UVS-2, Mol. Gen. Genet., 248, 174, 10.1007/BF02190798 Yu, 1996, Conservation of structure and function of the aflatoxin regulatory gene aflR from Aspergillus nidulans and A.flavus, Curr. Genet., 29, 549, 10.1007/BF02426959 Zhang, 1999, Studies on the interactions between human replication factor C and human proliferating cell nuclear antigen, Proc. Natl. Acad. Sci. USA, 96, 1869, 10.1073/pnas.96.5.1869