sdm: a reproducible and extensible R platform for species distribution modelling

Ecography - Tập 39 Số 4 - Trang 368-375 - 2016
Babak Naimi1,2, Miguel B. Araújo1,3,2,4
1Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, Univ. of Copenhagen, Denmark
2Imperial College London, Silwood Park, Buckhurst Road, Ascot, Berkshire, SL5 7PY UK
3Dept of Biogeography and Global Change, National Museum of Natural Sciences, CSIC, c/Jose Gutierrez Abascal, ES-28006 Madrid Spain
4InBio‐CIBIO, Univ. of Évora Largo dos Colegiais PT‐7000 Évora Portugal

Tóm tắt

sdm is an object‐oriented, reproducible and extensible, platform for species distribution modelling. It uses individual species and community‐based approaches, enabling ensembles of models to be fitted and evaluated, to project species potential distributions in space and time. It provides a standardized and unified structure for handling species distributions data and modelling techniques, and supports markedly different modelling approaches, including correlative, process‐based (mechanistic), agent‐based, and cellular automata. The object‐oriented design of software is such that scientists can modify existing methods, extend the framework by developing new methods or modelling procedures, and share them to be reproduced by other scientists. sdm can handle spatial and temporal data for single or multiple species and uses high performance computing solutions to speed up modelling and simulations. The framework is implemented in R, providing a flexible and easy‐to‐use GUI interface.

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Ecography

Tập 39 Số 4

368-375

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