m4C DNA methylation regulates biosynthesis of daptomycin in Streptomyces roseosporus L30
Tài liệu tham khảo
Oliveira, 2021, Conserved DNA methyltransferases: a window into fundamental mechanisms of epigenetic regulation in bacteria, Trends Microbiol, 29, 28, 10.1016/j.tim.2020.04.007
Genilloud, 2017, Actinomycetes: still a source of novel antibiotics, Nat Prod Rep, 34, 1203, 10.1039/C7NP00026J
Schmitz, 2019, DNA methylation: shared and divergent features across eukaryotes, Trends Genet, 35, 818, 10.1016/j.tig.2019.07.007
Beaulaurier, 2019, Deciphering bacterial epigenomes using modern sequencing technologies, Nat Rev Genet, 20, 157, 10.1038/s41576-018-0081-3
Luo, 2015, DNA N6-methyladenine: a new epigenetic mark in eukaryotes?, Nat Rev Mol Cell Biol, 16, 705, 10.1038/nrm4076
Yu, 2015, Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite-sequencing, Nucleic Acids Res, 43
Moore, 2013, DNA methylation and its basic function, Neuropsychopharmacology, 38, 23, 10.1038/npp.2012.112
Matthew, 2016, The epigenomic landscape of prokaryotes, PLoS Genet, 12
Adhikari, 2016, DNA methyltransferases and epigenetic regulation in bacteria, FEMS (Fed Eur Microbiol Soc) Microbiol Rev, 40, 575
Gonzalez, 2014, The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach, Nucleic Acids Res, 42, 3720, 10.1093/nar/gkt1352
Sánchez-Romero, 2020, Contribution of DNA adenine methylation to gene expression heterogeneity in Salmonella enterica, Nucleic Acids Res, 48, 11857, 10.1093/nar/gkaa730
Mouammine, 2018, The impact of DNA methylation in Alphaproteobacteria, Mol Microbiol, 110, 1, 10.1111/mmi.14079
Gaultney, 2020, 4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans, Nucleic Acids Res, 48, 12102, 10.1093/nar/gkaa966
Kumar, 2018, N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori, Nucleic Acids Res, 46, 3429, 10.1093/nar/gky126
Robbel, 2010, Daptomycin, a bacterial lipopeptide synthesized by a nonribosomal machinery, J Biol Chem, 285, 27501, 10.1074/jbc.R110.128181
McHenney, 1996, Gene transfer and transposition mutagenesis in Streptomyces roseosporus: mapping of insertions that influence daptomycin or pigment production, Microbiology (Read), 142, 2363, 10.1099/00221287-142-9-2363
Luo, 2018, Transposon-based identification of a negative regulator for the antibiotic hyper-production in Streptomyces, Appl Microbiol Biotechnol, 102, 6581, 10.1007/s00253-018-9103-5
Flett, 1997, High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes, FEMS (Fed Eur Microbiol Soc) Microbiol Lett, 155, 223, 10.1111/j.1574-6968.1997.tb13882.x
Liu, 2015, Generation of the natamycin analogs by gene engineering of natamycin biosynthetic genes in Streptomyces chattanoogensis L10, Microbiol Res, 173, 25, 10.1016/j.micres.2015.01.013
Bierman, 1992, Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp, Gene, 116, 43, 10.1016/0378-1119(92)90627-2
Blin, 2021, antiSMASH 6.0: improving cluster detection and comparison capabilities, Nucleic Acids Res, 49, W29, 10.1093/nar/gkab335
Nieselt, 2010, The dynamic architecture of the metabolic switch in Streptomyces coelicolor, BMC Genom, 11, 10, 10.1186/1471-2164-11-10
Horinouchi, 2002, A microbial hormone, A-factor, as a master switch for morphological differentiation and secondary metabolism in Streptomyces griseus, Front Biosci, 7, d2045
Wang, 2020, Harnessing the intracellular triacylglycerols for titer improvement of polyketides in Streptomyces, Nat Biotechnol, 38, 76, 10.1038/s41587-019-0335-4
Roberts, 2015, REBASE--a database for DNA restriction and modification: enzymes, genes and genomes, Nucleic Acids Res, 43, D298, 10.1093/nar/gku1046
Milot, 2021, ColabFold - making protein folding accessible to all, bioRxiv
Vandenbussche, 2020, DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility, mSphere, 5, 10.1128/mSphere.00455-20
Debono, 1987, A21978C, a complex of new acidic peptide antibiotics: isolation, chemistry, and mass spectral structure elucidation, J Antibiot, 40, 761, 10.7164/antibiotics.40.761
Lim, 2018, Auroramycin: a potent antibiotic from Streptomyces roseosporus by CRISPR-Cas9 activation, Chembiochem, 19, 1716, 10.1002/cbic.201800266
Liu, 2011, Imaging mass spectrometry and genome mining via short sequence tagging identified the anti-infective agent arylomycin in Streptomyces roseosporus, J Am Chem Soc, 133, 18010, 10.1021/ja2040877
Liu, 2014, MS/MS-based networking and peptidogenomics guided genome mining revealed the stenothricin gene cluster in Streptomyces roseosporus, J Antibiot (Tokyo), 67, 99, 10.1038/ja.2013.99
Zhang, 2017, CRISPR-Cas9 strategy for activation of silent Streptomyces biosynthetic gene clusters, Nat Chem Biol, 13, 607, 10.1038/nchembio.2341
Miao, 2005, Daptomycin biosynthesis in Streptomyces roseosporus: cloning and analysis of the gene cluster and revision of peptide stereochemistry, Microbiology (Read), 151, 1507, 10.1099/mic.0.27757-0
Zmijewski, 1986, Role of branched chain fatty acid precursors in regulating factor profile in the biosynthesis of A21978C complex, J Antibiot, 39, 1483, 10.7164/antibiotics.39.1483
Zheng, 2019, Dual regulation between the two-component system PhoRP and AdpA regulates antibiotic production in Streptomyces, J Ind Microbiol Biotechnol, 46, 725, 10.1007/s10295-018-02127-5
Zhang, 2015, A MarR family transcriptional regulator, DptR3, activates daptomycin biosynthesis and morphological differentiation in Streptomyces roseosporus, Appl Environ Microbiol, 81, 3753, 10.1128/AEM.00057-15
Huang, 2017, wblA, a pleiotropic regulatory gene modulating morphogenesis and daptomycin production in Streptomyces roseosporus, J Appl Microbiol, 123, 669, 10.1111/jam.13512
Yan, 2020, BldD, a master developmental repressor, activates antibiotic production in two Streptomyces species, Mol Microbiol, 113, 123, 10.1111/mmi.14405
Wang, 2014, DptR2, a DeoR-type auto-regulator, is required for daptomycin production in Streptomyces roseosporus, Gene, 544, 208, 10.1016/j.gene.2014.04.044
Mao, 2017, Negative regulation of daptomycin production by DepR2, an ArsR-family transcriptional factor, J Ind Microbiol Biotechnol, 44, 1653, 10.1007/s10295-017-1983-3
Sprusansky, 2005, The bkdR gene of Streptomyces coelicolor is required for morphogenesis and antibiotic production and encodes a transcriptional regulator of a branched-chain amino acid dehydrogenase complex, J Bacteriol, 187, 664, 10.1128/JB.187.2.664-671.2005
Luo, 2018, Regulatory and biosynthetic effects of the bkd gene clusters on the production of daptomycin and its analogs A21978C1–3, J Ind Microbiol Biotechnol, 45, 271, 10.1007/s10295-018-2011-y
Liu, 2013, Molecular regulation of antibiotic biosynthesis in streptomyces, Microbiol Mol Biol Rev, 77, 112, 10.1128/MMBR.00054-12
Molina-Henares, 2006, Members of the IclR family of bacterial transcriptional regulators function as activators and/or repressors, FEMS (Fed Eur Microbiol Soc) Microbiol Rev, 30, 157
Mehta, 2020, Discovery of ANTAR-RNAs and their mechanism of action in mycobacteria, J Mol Biol, 432, 4032, 10.1016/j.jmb.2020.05.003
Jones, 2017, Streptomyces exploration: competition, volatile communication and new bacterial behaviours, Trends Microbiol, 25, 522, 10.1016/j.tim.2017.02.001
Kato, 2007, Biosynthesis of gamma-butyrolactone autoregulators that switch on secondary metabolism and morphological development in Streptomyces, Proc Natl Acad Sci U S A, 104, 2378, 10.1073/pnas.0607472104
Sánchez-Romero, 2020, The bacterial epigenome, Nat Rev Microbiol, 18, 7, 10.1038/s41579-019-0286-2