iTRAQ and PRM-based quantitative proteomics in T2DM-susceptible and -tolerant models of Bama mini-pig

Alfadda, 2017, A proteomics based approach reveals differential regulation of visceral adipose tissue proteins between metabolically healthy and unhealthy obese patients, Mol. Cell, 40, 685, 10.14348/molcells.2017.0073

Andersen, 1997, Muscular atrophy in diabetic neuropathy: a stereological magnetic resonance imaging study, Diabetologia, 40, 1062, 10.1007/s001250050788

Atalay, 2004, Exercise training modulates heat shock protein response in diabetic rats, J. Appl. Physiol., 97, 605, 10.1152/japplphysiol.01183.2003

Barrett, 2017, Diabetes-mediated myelopoiesis and the relationship to cardiovascular risk, Ann. N. Y. Acad. Sci., 1402, 31, 10.1111/nyas.13462

Bassols, 2014, The pig as an animal model for human pathologies: a proteomics perspective, Proteomics Clin. Appl., 8, 715, 10.1002/prca.201300099

Baudino, 2006, Cardiac fibroblasts: friend or foe?, Am. J. Physiol. Heart Circ. Physiol., 291, H1015, 10.1152/ajpheart.00023.2006

Bonnans, 2014, Remodelling the extracellular matrix in development and disease, Nat. Rev. Mol. Cell Biol., 15, 786, 10.1038/nrm3904

Bostrom, 2012, A PGC1-alpha-dependent myokine that drives brown-fat-like development of white fat and thermogenesis, Nature, 481, 463, 10.1038/nature10777

Bowe, 2000, The small leucine-rich repeat proteoglycan biglycan binds to alpha-dystroglycan and is upregulated in dystrophic muscle, J. Cell Biol., 148, 801, 10.1083/jcb.148.4.801

Braga, 2016, Liver proteome in diabetes type 1 rat model: insulin-dependent and -independent changes, OMICS, 20, 711, 10.1089/omi.2016.0135

Cai, 2005, Local and systemic insulin resistance resulting from hepatic activation of IKK-beta and NF-kappaB, Nat. Med., 11, 183, 10.1038/nm1166

Cehofski, 2016, Retinal proteome changes following experimental branch retinal vein occlusion and intervention with ranibizumab, Exp. Eye Res., 152, 49, 10.1016/j.exer.2016.09.002

Cehofski, 2017, A review: proteomics in retinal artery occlusion, retinal vein occlusion, diabetic retinopathy and acquired macular disorders, Int. J. Mol. Sci., 18, 10.3390/ijms18050907

Chakravarti, 2017, Pancreatic proteome profiling of type 1 diabetic mouse: differential expression of proteins involved in exocrine function, stress response, growth, apoptosis and metabolism, Biochem. Biophys. Res. Commun., 487, 930, 10.1016/j.bbrc.2016.04.121

Chaves, 2017, Proteomic analysis of peripheral blood mononuclear cells after a high-fat, high-carbohydrate meal with orange juice, J. Proteome Res., 16, 4086, 10.1021/acs.jproteome.7b00476

Chen, 2012, Altered microRNA expression in skeletal muscle results from high-fat diet-induced insulin resistance in mice, Mol. Med. Rep., 5, 1362

Chinen, 2007, Vascular lipotoxicity: endothelial dysfunction via fatty-acid-induced reactive oxygen species overproduction in obese Zucker diabetic fatty rats, Endocrinology, 148, 160, 10.1210/en.2006-1132

Corcoran, 2007, Skeletal muscle lipid deposition and insulin resistance: effect of dietary fatty acids and exercise, Am. J. Clin. Nutr., 85, 662, 10.1093/ajcn/85.3.662

Deckx, 2016, The diverse functions of osteoglycin: a deceitful dwarf, or a master regulator of disease?, FASEB J., 30, 2651, 10.1096/fj.201500096R

Dodington, 2018, JAK/STAT - emerging players in metabolism, Trends Endocrinol. Metab., 29, 55, 10.1016/j.tem.2017.11.001

Frolova, 2012, Thrombospondin-4 regulates fibrosis and remodeling of the myocardium in response to pressure overload, FASEB J., 26, 2363, 10.1096/fj.11-190728

Gougeon, 2013, Insulin resistance of protein metabolism in type 2 diabetes and impact on dietary needs: a review, Can. J. Diabetes, 37, 115, 10.1016/j.jcjd.2013.01.007

Greco, 1995, Daily energy metabolism in patients with type 1 diabetes mellitus, J. Am. Coll. Nutr., 14, 286, 10.1080/07315724.1995.10718509

Gurzov, 2016, The JAK/STAT pathway in obesity and diabetes, FEBS J., 283, 3002, 10.1111/febs.13709

Han, 2011, Detection of differential proteomes associated with the development of type 2 diabetes in the Zucker rat model using the iTRAQ technique, J. Proteome Res., 10, 564, 10.1021/pr100759a

Hickey, 1995, Skeletal muscle fiber composition is related to adiposity and in vitro glucose transport rate in humans, Am. J. Phys., 268, E453

Holecek, 2002, Relation between glutamine, branched-chain amino acids, and protein metabolism, Nutrition, 18, 130, 10.1016/S0899-9007(01)00767-5

Hotamisligil, 2006, Inflammation and metabolic disorders, Nature, 444, 860, 10.1038/nature05485

Houpt, 1979, The pig as a model for the study of obesity and of control of food intake: a review, Yale J. Biol. Med., 52, 307

Inoguchi, 2000, High glucose level and free fatty acid stimulate reactive oxygen species production through protein kinase C—dependent activation of NAD(P)H oxidase in cultured vascular cells, Diabetes, 49, 1939, 10.2337/diabetes.49.11.1939

Jere, 2017, The JAK/STAT signaling pathway and photobiomodulation in chronic wound healing, Cytokine Growth Factor Rev., 38, 73, 10.1016/j.cytogfr.2017.10.001

Jiang, 2017, iTRAQ-based quantitative proteomic analysis on differentially expressed proteins of rat mandibular condylar cartilage induced by reducing dietary loading, Front. Med., 11, 97, 10.1007/s11684-016-0496-1

Kamei, 2004, Skeletal muscle FOXO1 (FKHR) transgenic mice have less skeletal muscle mass, down-regulated Type I (slow twitch/red muscle) fiber genes, and impaired glycemic control, J. Biol. Chem., 279, 41114, 10.1074/jbc.M400674200

Kasper, 2018, Cognitive deficits associated with a high-fat diet and insulin resistance are potentiated by overexpression of ecto-nucleotide pyrophosphatase phosphodiesterase-1[J], Int. J. Dev. Neurosci., 64, 48, 10.1016/j.ijdevneu.2017.03.011

de Lange, 2007, Fuel economy in food-deprived skeletal muscle: signaling pathways and regulatory mechanisms, FASEB J., 21, 3431, 10.1096/fj.07-8527rev

Lee, 2018, Fibromodulin and regulation of the intricate balance between myoblast differentiation to myocytes or adipocyte-like cells[J], FASEB J., 32, 768, 10.1096/fj.201700665R

Li, 2018, RNA-seq analysis of the transcriptome of the liver of cynomolgus monkeys with type 2 diabetes, Gene, 651, 118, 10.1016/j.gene.2018.02.010

Liu, 2007, Severe insulin resistance and moderate glomerulosclerosis in a minipig model induced by high-fat/high-sucrose/high-cholesterol diet, Exp. Anim., 56, 11, 10.1538/expanim.56.11

Lynch, 2014, Branched-chain amino acids in metabolic signalling and insulin resistance, Nat. Rev. Endocrinol., 10, 723, 10.1038/nrendo.2014.171

Ma, 2016, Identification of a novel function of adipocyte plasma membrane-associated protein (APMAP) in gestational diabetes mellitus by proteomic analysis of omental adipose tissue, J. Proteome Res., 15, 628, 10.1021/acs.jproteome.5b01030

Man, 2009, Effects of high-sugar and high-fat diet on growth and carbohydrate, lipid metabolism in Wistar rats, Wei Sheng Yan Jiu, 38, 722

Maris, 2015, Asporin is a fibroblast-derived TGF-beta1 inhibitor and a tumor suppressor associated with good prognosis in breast cancer, PLoS Med., 12, 10.1371/journal.pmed.1001871

Mielke, 2006, Longitudinal study of the effects of a high-fat diet on glucose regulation, hippocampal function, and cerebral insulin sensitivity in C57BL/6 mice, Behav. Brain Res., 175, 374, 10.1016/j.bbr.2006.09.010

Miller, 1987, The pig as a model for human nutrition, Annu. Rev. Nutr., 7, 361, 10.1146/annurev.nu.07.070187.002045

Milner, 2002, The integrin family of cell adhesion molecules has multiple functions within the CNS, J. Neurosci. Res., 69, 286, 10.1002/jnr.10321

Mosher, 2012, Adhesion-modulating/matricellular ECM protein families: a structural, functional and evolutionary appraisal, Matrix Biol., 31, 155, 10.1016/j.matbio.2012.01.003

Murfitt, 2018, Metabolomics and lipidomics study of mouse models of type 1 diabetes highlights divergent metabolism in purine and tryptophan metabolism prior to disease onset[J], J. Proteome Res., 17, 946, 10.1021/acs.jproteome.7b00489

Niu, 2017, Adiponectin induced AMP-activated protein kinase impairment mediates insulin resistance in Bama mini-pig fed high-fat and high-sucrose diet, Asian Australas. J. Anim. Sci., 30, 1190, 10.5713/ajas.17.0006

Oberbach, 2006, Altered fiber distribution and fiber-specific glycolytic and oxidative enzyme activity in skeletal muscle of patients with type 2 diabetes, Diabetes Care, 29, 895, 10.2337/diacare.29.04.06.dc05-1854

O'Shea, 2012, JAK and STAT signaling molecules in immunoregulation and immune-mediated disease, Immunity, 36, 542, 10.1016/j.immuni.2012.03.014

Ouchi, 2011, Adipokines in inflammation and metabolic disease, Nat. Rev. Immunol., 11, 85, 10.1038/nri2921

Pereira, 2008, Insulin resistance of protein metabolism in type 2 diabetes, Diabetes, 57, 56, 10.2337/db07-0887

Peterson, 2012, Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics, Mol. Cell. Proteomics, 11, 1475, 10.1074/mcp.O112.020131

Podell, 2017, A model of type 2 diabetes in the guinea pig using sequential diet-induced glucose intolerance and streptozotocin treatment, Dis. Model. Mech., 10, 151

Poolsup, 2017, Effect of dragon fruit on glycemic control in prediabetes and type 2 diabetes: a systematic review and meta-analysis, PLoS One, 12, 10.1371/journal.pone.0184577

Reynes, 2017, Gene expression modulation of lipid and central energetic metabolism related genes by high-fat diet intake in the main homeostatic tissues, Food Funct., 8, 629, 10.1039/C6FO01473A

Ross, 2004, Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents, Mol. Cell. Proteomics, 3, 1154, 10.1074/mcp.M400129-MCP200

Sexton, 1994, Microcirculatory structure-function relationships in skeletal muscle of diabetic rats, Am. J. Phys., 266, H1502

She, 2007, Disruption of BCATm in mice leads to increased energy expenditure associated with the activation of a futile protein turnover cycle, Cell Metab., 6, 181, 10.1016/j.cmet.2007.08.003

Shoelson, 2006, Inflammation and insulin resistance, J. Clin. Invest., 116, 1793, 10.1172/JCI29069

Speirs, 2018, Linking energy sensing to suppression of JAK-STAT signalling: a potential route for repurposing AMPK activators?, Pharmacol. Res., 128, 88, 10.1016/j.phrs.2017.10.001

Spurlock, 2008, The development of porcine models of obesity and the metabolic syndrome, J. Nutr., 138, 397, 10.1093/jn/138.2.397

Sure, 2016, Janus face of thrombospondin-4: impairs small artery vasodilation but protects against cardiac hypertrophy and aortic aneurysm formation, Am. J. Physiol. Heart Circ. Physiol., 310, H1383, 10.1152/ajpheart.00273.2016

Tao, 2012, Collagen XIV is important for growth and structural integrity of the myocardium, J. Mol. Cell. Cardiol., 53, 626, 10.1016/j.yjmcc.2012.08.002

Tsuchiya, 2013, The parallel reaction monitoring method contributes to a highly sensitive polyubiquitin chain quantification, Biochem. Biophys. Res. Commun., 436, 223, 10.1016/j.bbrc.2013.05.080

Unger, 2003, Lipid overload and overflow: metabolic trauma and the metabolic syndrome, Trends Endocrinol. Metab., 14, 398, 10.1016/j.tem.2003.09.008

Verma, 2011, Recent advances in the use of Sus scrofa (pig) as a model system for proteomic studies, Proteomics, 11, 776, 10.1002/pmic.201000320

Wang, 2010, Genetic breeding of Guangxi Bama mini-pig, Lab. Anim. Sci., 1, 025

Wilson, 2017, High fat diet and associated changes in the expression of micro-RNAs in tissue: lessons learned from animal studies, Mol. Nutr. Food Res., 61, 10.1002/mnfr.201600943

Wu, 2017, Skeletal muscle inflammation and insulin resistance in obesity, J. Clin. Invest., 127, 43, 10.1172/JCI88880

Wu, 2006, Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF, J. Proteome Res., 5, 651, 10.1021/pr050405o

Wu, 2018, Comparative analysis on liver transcriptome profiles of different methods to establish type 2 diabetes mellitus models in Guangxi Bama mini-pig, Gene, 673, 194, 10.1016/j.gene.2018.06.014

Yu, 2014, A novel targeted proteomics method for identification and relative quantitation of difference in nitration degree of OGDH between healthy and diabetic mouse, Proteomics, 14, 2417, 10.1002/pmic.201400274