YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration
Tài liệu tham khảo
Azzolin, 2012, Role of TAZ as mediator of Wnt signaling, Cell, 151, 1443, 10.1016/j.cell.2012.11.027
Azzolin, 2014, YAP/TAZ incorporation in the β-catenin destruction complex orchestrates the Wnt response, Cell, 158, 157, 10.1016/j.cell.2014.06.013
Barker, 2012, Identifying the stem cell of the intestinal crypt: strategies and pitfalls, Cell Stem Cell, 11, 452, 10.1016/j.stem.2012.09.009
Barry, 2013, Restriction of intestinal stem cell expansion and the regenerative response by YAP, Nature, 493, 106, 10.1038/nature11693
Beaugerie, 2015, Cancers complicating inflammatory bowel disease, N. Engl. J. Med., 372, 1441, 10.1056/NEJMra1403718
Blanpain, 2014, Stem cell plasticity. Plasticity of epithelial stem cells in tissue regeneration, Science, 344, 1242281, 10.1126/science.1242281
Cai, 2010, The Hippo signaling pathway restricts the oncogenic potential of an intestinal regeneration program, Genes Dev., 24, 2383, 10.1101/gad.1978810
Camargo, 2007, YAP1 increases organ size and expands undifferentiated progenitor cells, Curr. Biol., 17, 2054, 10.1016/j.cub.2007.10.039
Carvalho, 2010, A framework for oligonucleotide microarray preprocessing, Bioinformatics, 26, 2363, 10.1093/bioinformatics/btq431
Cordero, 2014, c-Src drives intestinal regeneration and transformation, EMBO J., 33, 1474
Dunning, 2007, beadarray: R classes and methods for Illumina bead-based data, Bioinformatics, 23, 2183, 10.1093/bioinformatics/btm311
Dupont, 2011, Role of YAP/TAZ in mechanotransduction, Nature, 474, 179, 10.1038/nature10137
el Marjou, 2004, Tissue-specific and inducible Cre-mediated recombination in the gut epithelium, Genesis, 39, 186, 10.1002/gene.20042
Fernandez Vallone, 2016, Trop2 marks transient gastric fetal epithelium and adult regenerating cells after epithelial damage, Development, 143, 1452
Flanagan, 2008, Intestinal epithelial cell up-regulation of LY6 molecules during colitis results in enhanced chemokine secretion, J. Immunol., 180, 3874, 10.4049/jimmunol.180.6.3874
Fordham, 2013, Transplantation of expanded fetal intestinal progenitors contributes to colon regeneration after injury, Cell Stem Cell, 13, 734, 10.1016/j.stem.2013.09.015
Gjorevski, 2016, Designer matrices for intestinal stem cell and organoid culture, Nature, 539, 560, 10.1038/nature20168
Gregorieff, 2015, Yap-dependent reprogramming of Lgr5(+) stem cells drives intestinal regeneration and cancer, Nature, 526, 715, 10.1038/nature15382
Kim, 2015, Adhesion to fibronectin regulates Hippo signaling via the FAK-Src-PI3K pathway, J. Cell Biol., 210, 503, 10.1083/jcb.201501025
Kim, 2017, Prostaglandin E2 Activates YAP and a Positive-Signaling Loop to Promote Colon Regeneration After Colitis but Also Carcinogenesis in Mice, Gastroenterology, 152, 616, 10.1053/j.gastro.2016.11.005
MacDonald, J.W. (2008). affycoretools: functions useful for those doing repetitive analyses with Affymetrix GeneChips. R package version 1.46.1.
Miyoshi, 2017, Prostaglandin E2 promotes intestinal repair through an adaptive cellular response of the epithelium, EMBO J., 36, 5, 10.15252/embj.201694660
Morrison, 1995, The biology of hematopoietic stem cells, Annu. Rev. Cell Dev. Biol., 11, 35, 10.1146/annurev.cb.11.110195.000343
Muñoz, 2012, The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4′ cell markers, EMBO J., 31, 3079, 10.1038/emboj.2012.166
Mustata, 2013, Identification of Lgr5-independent spheroid-generating progenitors of the mouse fetal intestinal epithelium, Cell Rep., 5, 421, 10.1016/j.celrep.2013.09.005
Muzumdar, 2007, A global double-fluorescent Cre reporter mouse, Genesis, 45, 593, 10.1002/dvg.20335
Owen, 2011, FAK regulates intestinal epithelial cell survival and proliferation during mucosal wound healing, PLoS ONE, 6, e23123, 10.1371/journal.pone.0023123
Panciera, 2016, Induction of Expandable Tissue-Specific Stem/Progenitor Cells through Transient Expression of YAP/TAZ, Cell Stem Cell, 19, 725, 10.1016/j.stem.2016.08.009
Piccolo, 2014, The biology of YAP/TAZ: hippo signaling and beyond, Physiol. Rev., 94, 1287, 10.1152/physrev.00005.2014
Ritchie, 2015, limma powers differential expression analyses for RNA-sequencing and microarray studies, Nucleic Acids Res., 43, e47, 10.1093/nar/gkv007
Robles, 2016, Whole-Exome Sequencing Analyses of Inflammatory Bowel Disease-Associated Colorectal Cancers, Gastroenterology, 150, 931, 10.1053/j.gastro.2015.12.036
Sato, 2009, Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche, Nature, 459, 262, 10.1038/nature07935
Sato, 2011, Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett’s epithelium, Gastroenterology, 141, 1762, 10.1053/j.gastro.2011.07.050
Schnell, 2013, EpCAM proteolysis: new fragments with distinct functions?, Biosci. Rep., 33, e00030, 10.1042/BSR20120128
Schwank, 2013, Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients, Cell Stem Cell, 13, 653, 10.1016/j.stem.2013.11.002
Schweiger, 2016, Modeling human disease using organotypic cultures, Curr. Opin. Cell Biol., 43, 22, 10.1016/j.ceb.2016.07.003
Sorrentino, 2014, Metabolic control of YAP and TAZ by the mevalonate pathway, Nat. Cell Biol., 16, 357, 10.1038/ncb2936
Stappenbeck, 2009, The role of stromal stem cells in tissue regeneration and wound repair, Science, 324, 1666, 10.1126/science.1172687
Taniguchi, 2015, A gp130-Src-YAP module links inflammation to epithelial regeneration, Nature, 519, 57, 10.1038/nature14228
Van der Goten, 2014, Integrated miRNA and mRNA expression profiling in inflamed colon of patients with ulcerative colitis, PLoS ONE, 9, e116117, 10.1371/journal.pone.0116117
Wong, 2012, Lrig1 controls intestinal stem-cell homeostasis by negative regulation of ErbB signalling, Nat. Cell Biol., 14, 401, 10.1038/ncb2464
Yaeger, 2016, Genomic Alterations Observed in Colitis-Associated Cancers Are Distinct From Those Found in Sporadic Colorectal Cancers and Vary by Type of Inflammatory Bowel Disease, Gastroenterology, 151, 278, 10.1053/j.gastro.2016.04.001
Yanger, 2013, Robust cellular reprogramming occurs spontaneously during liver regeneration, Genes Dev., 27, 719, 10.1101/gad.207803.112
Yui, 2012, Functional engraftment of colon epithelium expanded in vitro from a single adult Lgr5+ stem cell, Nat. Med., 18, 618, 10.1038/nm.2695
Zhang, 2010, The Merlin/NF2 tumor suppressor functions through the YAP oncoprotein to regulate tissue homeostasis in mammals, Dev. Cell, 19, 27, 10.1016/j.devcel.2010.06.015