Xylanases, xylanase families and extremophilic xylanases
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Prade R.A. (1995) Xylanases: from biology to biotechnology. Biotech. Genet. Eng. Rev. 13, 100–131.
Wong K.K.Y. Tan L.U.L. Saddler J.N. (1988) Multiplicity of beta-1,4-xylanases in microorganisms: functions and applications. Microbiol. Rev. 52, 305–317.
Chanda, S.K., Hirst, E.L., Jones, J.K.N., Percival, E.G.V. The constitution of xylan from esparto grass. J. Chem. Soc. 1950. 12889–12897
Eda S. Ohnishi A. Kato K. (1976) Xylan isolated from the stalk of Nicotiana tabacum . Agric. Biol. Chem. 40, 359–364.
Elegir G. Szakacs M. Jeffries T.W. (1994) Purification, characterization and substrate specificities of multiple xylanases from Streptomyces sp. strain B-12-2. Appl. Environ. Microbiol. 60, 2609–2615.
Wubah D.A. Akin D.E. Borneman W.S. (1993) Biology, fiber-degradation, and enzymology of anaerobic zoosporic fungi. Crit. Rev. Microbiol. 19, 99–115.
Matte A. Forsberg C.W. (1992) Purification, characterization, and mode of action of endoxylanases 1 and 2 from Fibrobacter succinogenes S85. Appl. Environ. Microbiol. 58, 157–168.
Yang R.C. MacKenzie C.R. Bilous D. Narang S.A. (1989) Identification of two distinct Bacillus circulans xylanases by molecular cloning of the genes and expression in Escherichia coli . Appl. Environ. Microbiol. 55, 568–572.
Luthi E. Love D.R. McAnulty J. Wallace C. Caughey P.A. Saul D. Bergquist P.L. (1990) Cloning, sequence analysis, and expression of genes encoding xylan-degrading enzymes from the thermophile Caldocellum saccharolyticum . Appl. Environ. Microbiol. 56, 1017–1024.
Zhu H. Paradis F.W. Krell P.J. Phillips J.P. Forsberg C.W. (1994) Enzymatic specificities and modes of action of the two catalytic domains of the XynC xylanase from Fibrobacter succinogenes S85. J. Bacteriol. 176, 3885–3894.
Irwin D. Jung E.D. Wilson D.B. (1994) Characterization and sequence of a Thermomonospora fusca xylanase. Appl. Environ. Microbiol. 60, 763–770.
Hayashi H. Takagi K.I. Fukumura M. Kimura T. Karita S. Sakka K. Ohmiya K. (1997) Sequence of xynC and properties of XynC, a major component of the Clostridium thermocellum cellulosome. J. Bacteriol. 179, 4246–4253.
Grepinet O. Chebrou M.C. Beguin P. (1988) Purification of Clostridium thermocellum xylanase Z expressed in Escherichia coli and identification of the corresponding product in the culture medium of C. thermocellum . J. Bacteriol. 170, 4576–4581.
Gilkes N.R. Henrissat B. Kilburn D.G. Miller R.C. Jr. Warren R.A. (1991) Domains in microbial 4-glycanases: sequence conservation, function, and enzyme families. Microbiol. Rev. 55, 303–315.
Defaye J. Guillot J.M. Biely P. Vrsanska M. (1992) Positional isomers of thioxylobiose, their synthesis and inducing ability for d-xylan-degrading enzymes in the yeast Cryptococcus albidus . Carbohydr. Res. 228, 47–64.
Fontes C.M. Gilbert H.J. Hazlewood G.P. Clarke J.H. Prates J.A. McKie V.A. Nagy T. Fernandes T.H. Ferreira L.M. (2000) A novel Cellvibrio mixtus family 10 xylanase that is both intracellular and expressed under non-inducing conditions. Microbiology 146 (Pt 8), 1959–1967.
Shulami S. Gat O. Sonenshein A.L. Shoham Y. (1999) The glucuronic acid utilization gene cluster from Bacillus stearothermophilus T-6. J. Bacteriol. 181, 3695–3704.
Coutinho, P.M. and Henrissat, B. (1999) Carbohydrate-active enzyme server (CAZY) at URL: http://afmb.cnrs-mrs.fr/˜cazy/CAZY/
Gebler J. Gilkes N.R. Claeyssens M. Wilson D.B. Beguin P. Wakarchuk W.W. Kilburn D.G. Miller R.C. Jr. Warren R.A. Withers S.G. (1992) Stereoselective hydrolysis catalyzed by related beta-1,4-glucanases and beta-1,4-xylanases. J. Biol. Chem. 267, 12559–12561.
Flint H.J. Martin J. McPherson C.A. Daniel A.S. Zhang J.X. (1993) A bifunctional enzyme, with separate xylanase and beta(1,3-1,4)-glucanase domains, encoded by the xynD gene of Ruminococcus flavefaciens . J. Bacteriol. 175, 2943–2951.
Saloheimo, M., Siika-aho, M., Tenkanen, M. and Penttila, M.E. (2003) Novel xylanase from Trichoderma reesei, method for production thereof, and methods employing this enzyme. In: United States Patent Application 20030054518
Tenkanen, M., Burgermeister, M., Vrsanska, M., Biely, P., Saloheimo, M., Siika-aho, M. (2003) A novel xylanase XYN IV from Trichoderma reesei and its action on different xylans. In: Recent Advances in Enzymes in Grain Processing (Courtin, C.M., Veraverbeke, W.S., Delcour, J.A., Eds.), pp.41–46 Kat. Univ. Leuven, Leuven.
Suzuki T. Ibata K. Hatsu M. Takamizawa K. Keiichi K. (1997) Cloning and expression of a 58-kDa xylanase VI gene (xynD) of Aeromonas caviae ME-1 in Escherichia coli which is not categorized as a family F or family G xylanase. J. Fermen. Bioeng. 84, 86–89.
Nishitani K. Nevins D.J. (1991) Glucuronoxylan xylanohydrolase. A unique xylanase with the requirement for appendant glucuronosyl units. J. Biol. Chem. 266, 6539–6543.
Biely, P., Vrsanska, M., Kremnicky, L., Tenkanen, M., Poutanen, K., Hayn, M. (1993) Catalytic properties of endo-b-1,4-xylanases of Trichoderma reesei. In: Trichoderma reesei Cellulases and Other Hydrolases (Suominen, P., Reinikainen, T., Eds.), pp.125–135 Fagepaino Oy, Helsinki.
Parkkinen T. Hakulinen N. Tenkanen M. Siika-aho M. Rouvinen J. (2004) Crystallization and preliminary X-ray analysis of a novel Trichoderma reesei xylanase IV belonging to glycoside hydrolase family 5. Acta Crystallogr. D: Biol. Crystallogr. 60, 542–544.
Dutron, A., Georis, J., Genot, B., Dauvrin, T., Collins, T., Hoyoux, A. and Feller, G. (2004) Use of family 8 enzymes with xylanolytic activity in baking. In: World Intellectual Property Organization, PCT, WO 2004/023879 A1
Yoon K.H. Yun H.N. Jung K.H. (1998) Molecular cloning of a Bacillus sp. KK-1 xylanase gene and characterization of the gene product. Biochem. Mol. Biol. Int. 45, 337–347.
Fierobe H.P. Bagnara-Tardif C. Gaudin C. Guerlesquin F. Sauve P. Belaich A. Belaich J.P. (1993) Purification and characterization of endoglucanase C from Clostridium cellulolyticum. Catalytic comparison with endoglucanase A. Eur. J. Biochem. 217, 557–565.
Biely, P. (2003) Diversity of microbial endo-b-1,4-xylanases. In: Applications of Enzymes to Lignocellulosics (Mansfield, S.D., Saddler, J.N., Eds.), pp.361–380 American chemical Society, Washington.
Gilkes N.R. Claeyssens M. Aebersold R. Henrissat B. Meinke A. Morrison H.D. Kilburn D.G. Warren R.A. Miller R.C. Jr. (1991) Structural and functional relationships in two families of beta-1,4-glycanases. Eur. J. Biochem. 202, 367–377.
Van Tilbeurgh H. Claeyssens M. (1985) Detection and differentiation of cellulase components using low molecular mass fluorogenic substrates. FEBS Lett. 187, 283–288.
Haas H. Herfurth E. Stoffler G. Redl B. (1992) Purification, characterization and partial amino acid sequences of a xylanase produced by Penicillium chrysogenum . Biochim. Biophys. Acta 1117, 279–286.
Biely P. Kratky Z. Vrsanska M. (1981) Substrate-binding site of endo-1,4-beta-xylanase of the yeast Cryptococcus albidus . Eur. J. Biochem. 119, 559–564.
Derewenda U. Swenson L. Green R. Wei Y. Morosoli R. Shareck F. Kluepfel D. Derewenda Z.S. (1994) Crystal structure, at 2.6-Å resolution, of the Streptomyces lividans xylanase A, a member of the F family of beta-1,4-d-glycanases. J. Biol. Chem. 269, 20811–20814.
Ryttersgaard C. Lo Leggio L. Coutinho P.M. Henrissat B. Larsen S. (2002) Aspergillus aculeatus beta-1,4-galactanase: substrate recognition and relations to other glycoside hydrolases in clan GH-A. Biochemistry 41, 15135–15143.
Ntarima, P. (2000) Les xylanases des familles 10 et 11: différentiation et caractérisation, Laboratory of Biochemistry, University of Gent, Gent, pp. 96
Bray M.R. Clarke A.J. (1992) Action pattern of xylo-oligosaccharide hydrolysis by Schizophyllum commune xylanase A. Eur. J. Biochem. 204, 191–196.
Vrsanska M. Gorbacheva I.V. Kratky Z. Biely P. (1982) Reaction pathways of substrate degradation by an acidic endo-1,4-beta-xylanase of Aspergillus niger . Biochim. Biophys. Acta 704, 114–122.
Oakley A.J. Heinrich T. Thompson C.A. Wilce M.C. (2003) Characterization of a family 11 xylanase from Bacillus subtillis B230 used for paper bleaching. Acta Crystallogr. D: Biol. Crystallogr. 59, 627–636.
Hakulinen N. Turunen O. Janis J. Leisola M. Rouvinen J. (2003) Three-dimensional structures of thermophilic beta-1,4-xylanases from Chaetomium thermophilum and Nonomuraea flexuosa. Comparison of twelve xylanases in relation to their thermal stability. Eur. J. Biochem. 270, 1399–1412.
Campbell, R.L., Rose, D.R., Wakarchuk, W.W., To, R.J., Sung, Z., Yagushi, M. (1993) High resolution structures of xylanases from Bacillus circulans and Trichoderma harzianum identify a new folding pattern and implications for the atomic basis of the catalysis. Foundation for biotechnical and industrial fermentation research. In: Trichoderma reesei Cellulases and Other Hydrolases (Souminen, P., Reikainen, T., Eds.), pp.63–72 Espoo, Finland.
Torronen A. Harkki A. Rouvinen J. (1994) Three-dimensional structure of endo-1,4-beta-xylanase II from Trichoderma reesei: two conformational states in the active site. EMBO J. 13, 2493–2501.
Penttila M. Lehtovaara P. Nevalainen H. Bhikhabhai R. Knowles J. (1986) Homology between cellulase genes of Trichoderma reesei: complete nucleotide sequence of the endoglucanase I gene. Gene 1692, 253–263.
Biely P. Vrsanska M. Claeyssens M. (1991) The endo-1,4-beta-glucanase I from Trichoderma reesei. Action on beta-1,4-oligomers and polymers derived from d-glucose and d-xylose. Eur. J. Biochem. 200, 157–163.
Gosalbes M.J. Perez-Gonzalez J.A. Gonzalez R. Navarro A. (1991) Two beta-glycanase genes are clustered in Bacillus polymyxa: molecular cloning, expression, and sequence analysis of genes encoding a xylanase and an endo-beta-(1,3)-(1,4)-glucanase. J. Bacteriol. 173, 7705–7710.
Waino M. Ingvorsen K. (2003) Production of beta-xylanase and beta-xylosidase by the extremely halophilic archaeon Halorhabdus utahensis . Extremophiles 7, 87–93.
Wejse P.L. Ingvorsen K. Mortensen K.K. (2003) Purification and characterisation of two extremely halotolerant xylanases from a novel halophilic bacterium. Extremophiles 7, 423–431.
Sunna A. Bergquist P.L. (2003) A gene encoding a novel extremely thermostable1,4-beta-xylanase isolated directly from an environmental DNA sample. Extremophiles 7, 63–70.
Luthi E. Jasmat N.B. Bergquist P.L. (1990) Xylanase from the extremely thermophilic bacterium Caldocellum saccharolyticum: overexpression of the gene in Escherichia coli and characterization of the gene product. Appl. Environ. Microbiol. 56, 2677–2683.
Khasin A. Alchanati I. Shoham Y. (1993) Purification and characterization of a thermostable xylanase from Bacillus stearothermophilus T-6. Appl. Environ. Microbiol. 59, 1725–1730.
Andrade C.M.M.C. Pereira N. Antranikian G. (1999) Extremely thermophilic microorganisms and their polymer-hydrolytic enzymes. Rev. Microbiol. 30, 287–298.
Bragger J.M. Daniel R.M. Coolbear T. Morgan H.W. (1989) Very stable enzymes from extremely thermophilic archaebacteria and eubacteria. Appl. Environ. Microbiol. 31, 556–561.
Humphry D.R. George A. Black G.W. Cummings S.P. (2001) Flavobacterium frigidarium sp. nov., an aerobic, psychrophilic, xylanolytic and laminarinolytic bacterium from Antarctica. Int. J. Syst. Evol. Microbiol. 51, 1235–1243.
Akila G. Chandra T.S. (2003) A novel cold-tolerant Clostridium strain PXYL1 isolated from a psychrophilic cattle manure digester that secretes thermolabile xylanase and cellulase. FEMS Microbiol. Lett. 219, 63–67.
Turkiewiz M. Kalinowska H. Zielinska M. Bielecki S. (2000) Purification and characterisation of two endo-1,4-xylanases from Antarctic krill, Euphasia superba Dana . Comp. Biol. Physiol. Part B 127, 325–335.
Bradner J.R. Sidhu R.K. Gillings M. Nevalainen K.M. (1999) Hemicellulase activity of antarctic microfungi. J. Appl. Microbiol. 87, 366–370.
Inglis G.D. Popp A.P. Selinger L.B. Kawchuk L.M. Gaudet D.A. McAllister T.A. (2000) Production of cellulases and xylanases by low-temperature basidiomycetes. Can. J. Microbiol. 46, 860–865.
Collins, T., Claverie, P., D'Amico, S., Georlette, D., Gratia, E., Hoyoux, A., Meuwis, M.A., Poncin, J., Sonan, G., Feller, G., Gerday, C., Life in the Cold: Psychrophilic Enzymes. Recent Research Developments in Proteins. Vol. 1, 2002. Transworld Research Network, Trivandrum. pp. 13–26
Horikoshi K. (1999) Alkaliphiles: some applications of their products for biotechnology. Microbiol. Mol. Biol. Rev. 63, 735–750.
Gessesse A. (1998) Purification and properties of two thermostable alkaline xylanases from an alkaliphilic Bacillus sp. Appl. Environ. Microbiol. 64, 3533–3535.
Ratanakhanokchai K. Kyu K.L. Tanticharoen M. (1999) Purification and properties of a xylan-binding endoxylanase from alkaliphilic Bacillus sp. strain K-1. Appl. Environ. Microbiol. 65, 694–697.
Duarte M.C. Pellegrino A.C. Portugal E.P. Ponezi A.N. Franco T.T. (2000) Characterization of alkaline xylanases from Bacillus pumilus . Braz. J. Microbiol. 31, 90–94.
Nakamura S. Wakabayashi K. Nakai R. Aono R. Horikoshi K. (1993) Purification and some properties of an alkaline xylanase from alkaliphilic Bacillus sp. strain 41M-1. Appl. Environ. Microbiol. 59, 2311–2316.
Horikoshi K. Atsukawa Y. (1973) Xylanase produced by alkalophilic Bacillus no C-59-2. Agric. Biol. Chem. 37, 2097–2103.
Inagaki K. Nakahira K. Mukai K. Tamura T. Tanaka H. (1998) Gene cloning and characterization of an acidic xylanase from Acidobacterium capsulatum . Biosci. Biotechnol. Biochem. 62, 1061–1067.
Godfrey, T., West, S. (1996) Industrial Enzymology, Second ed. Macmillan Press Ltd., London.
Godfrey, T. (2003) The enzymes market for grain processing. In: Recent Advances in Enzymes in Grain Processing (Courtin, C.M., Veraverbeke, W.S., Delcour, J.A., Eds.), pp.401–406 Kat. Univ. Leuven, Leuven.
Tikhomirov, D.F., Sinitsyn, A.P., Zorov, I.N., Williams, C. (2003) Non-starch polysaccharide hydrolysing microbial enzymes in grain processing. In: Recent Advances in Enzymes in Grain Processing (Courtin, C.M., Veraverbeke, W.S., Delcour, J.A., Eds.), pp.413–418 Kat. Univ. Leuven, Leuven.
Kamal Kumar, B., Balakrishnan, H. and Rele, M.V. (2004) Compatibility of alkaline xylanases from an alkaliphilic Bacillus NCL (87-6-10) with commercial detergents and proteases. J. Ind. Microbiol. Biotechnol. Epub ahead of print
Katapodis P. Vardakou M. Kalogeris E. Kekos D. Macris B.J. Christakopoulos P. (2003) Enzymic production of a feruloylated oligosaccharide with antioxidant activity from wheat flour arabinoxylan. Eur. J. Nutr. 42, 55–60.
Matsumura S. Sakiyama K. Toshima K. (1999) Preparation of octyl-B-d-xylobioside and xyloside by xylanase catalyzed direct transglycosylation reaction of xylan and octanol. Biotechnol. Lett. 21, 17–22.
Imanaka, T. and Sakurai, S. (1992) Method of washing super precision devices, semiconductors, with enzymes. United States Patent 5,078,802
Campenhout, L.V., Somers, I., Van de Craen, S., Adams, C. (2003) In vitro test to evaluate protein degradation by feed enzymes. In: Recent Advances in Enzymes in Grain Processing (Courtin, C.M., Veraverbeke, W.S., Delcour, J.A., Eds.), pp.387–390 Kat. Univ. Leuven., Leuven.
Galante, Y.M., De Conti, A., Monteverdi, R. (1998) Application of Trichoderma enzymes in food and feed industries. In: Trichoderma and Gliocladium– Enzymes, Biological Control and Commercial Applications (Harman, G.E., Kubicek, C.P., Eds.), pp.327–342 Taylor and Francis, London.
Wong, K.K.Y., Saddler, J.N. (1993) Applications of hemicellulases in the food, feed and pulp and paper industries. In: Hemicelluloses and Hemicellulases (Coughlan, M.P., Hazlewood, G.P., Eds.), pp.127–143 Portland Press, London.
Maat, J., Roza, M., Verbakel, J., Stam, H., daSilra, M.J.S., Egmond, M.R., Hagemans, M.L.D., van Garcom, R.F.M., Hessing, J.G.M., van Derhondel, C., van Rotterdam, C. (1992) Xylanases and their application in baking. In: Xylan and Xylanases (Visser, J., Beldman, G., van Someren, M.A.K., Voragen, A.G.J., Eds.), pp.349–360 Elsevier, Amsterdam.
Mathlouthi N. Lalles J.P. Lepercq P. Juste C. Larbier M. (2002) Xylanase and beta-glucanase supplementation improve conjugated bile acid fraction in intestinal contents and increase villus size of small intestine wall in broiler chickens fed a rye-based diet. J. Anim. Sci. 80, 2773–2779.
Pala H. Mota M. Gama F.M. (2004) Enzymatic versus chemical deinking of non-impact ink printed paper. J. Biotechnol. 108, 79–89.
Frederix, S.A., Courtin, C.M., Delcour, J.A. (2003) Impact of endoxylanases with different substrate selectivity on gluten-starch separation. In: Recent Advances in Enzymes in Grain Processing (Courtin, C.M., Veraverbeke, W.S., Delcour, J.A., Eds.), pp.247–254 Kat. Univ. Leuven, Leuven.
Sharma H.S.S. (1987) Enzymatic degradation of residual non-cellulosic polysaccharides present on dew-retted flax fibers. Appl. Microbiol. Biotechnol. 26, 2714–2723.