X-ray microtomography in biology

Ananda, 2006, The visualization of hepatic vasculature by X-ray micro-computed tomography, J. Electron Microsc., 55, 151, 10.1093/jmicro/dfl015 Andrews, 2010, Nanoscale X-ray microscopic imaging of mammalian mineralized tissue, Microsc. Microanal., 16, 327, 10.1017/S1431927610000231 Arora, H., Wu, A., Paunesku, T., Woloschak, G., 2010. Conjugation of Fe3O4@TiO2 core-shell nanoparticles to doxorubicin improves localization and cytotoxicity in drug-resistant ovarian carcinoma. 10th International Conference on X-ray Microscopy, Abstracts, 278. Betz, 2007, Imaging applications of synchrotron X-ray phase-contrast microtomography in biological morphology and biomaterials science. I. General aspects of the technique and its advantages in the analysis of millimetre-sized arthropod structure, J. Microsc., 227, 51, 10.1111/j.1365-2818.2007.01785.x Bonse, 1996, X-ray computed microtomography (microCT) using synchrotron radiation, Prog. Biophys. Mol. Biol., 65, 133, 10.1016/S0079-6107(96)00011-9 Bonse, 1994, 3D computed X-ray tomography of human cancellous bone at 8 microns spatial and 10-4 energy resolution, Bone Miner., 25, 25, 10.1016/S0169-6009(08)80205-X Brabant, 2011, Three-dimensional analysis of high-resolution X-ray computed tomography data with Morpho+, Microsc. Microanal., 17, 252, 10.1017/S1431927610094389 Cancedda, 2007, Bulk and interface investigations of scaffolds and tissue-engineered bones by X-ray microtomography and X-ray microdiffraction, Biomaterials, 28, 2505, 10.1016/j.biomaterials.2007.01.022 Chaturvedi, 2005, Three-dimensional segmentation and skeletonization to build an airway tree data structure for small animals, Phys. Med. Biol., 50, 1405, 10.1088/0031-9155/50/7/005 Chen, 2009, Complex embryos displaying bilaterian characters from Precambrian Doushantuo phosphate deposits, Weng‘an, Guizhou, China, Proc. Natl. Acad. Sci. U. S. A., 106, 19056, 10.1073/pnas.0904805106 Connor, 2009, Computed tomography of amyloid plaques in a mouse model of Alzheimer‘s disease using diffraction enhanced imaging, Neuroimage, 46, 908, 10.1016/j.neuroimage.2009.03.019 Davit, 2011, Imaging biofilm in porous media using X-ray computed microtomography, J. Microsc., 242, 15, 10.1111/j.1365-2818.2010.03432.x de Crespigny, 2008, 3D micro-CT imaging of the postmortem brain, J. Neurosci. Methods, 171, 207, 10.1016/j.jneumeth.2008.03.006 de Jonge, 2010, Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400-nm resolution, Proc. Natl. Acad. Sci. U. S. A., 107, 15676, 10.1073/pnas.1001469107 Faraj, 2009, Micro-computed tomographical imaging of soft biological materials using contrast techniques, Tissue Eng. Part C, 15, 493, 10.1089/ten.tec.2008.0436 Friis, 2007, Phase-contrast X-ray microtomography links Cretaceous seeds with Gnetales and Bennettitales, Nature, 450, 549, 10.1038/nature06278 Frisullo, 2010, Assessment of intramuscular fat level and distribution in beef muscles using X-ray microcomputed tomography, Meat Sci., 85, 250, 10.1016/j.meatsci.2010.01.008 Fusseis, 2009, Creep cavitation can establish a dynamic granular fluid pump in ductile shear zones, Nature, 459, 974, 10.1038/nature08051 Giuliani, 2011, High-resolution X-ray microtomography for three-dimensional imaging of cardiac progenitor cell homing in infarcted rat hearts, J. Tissue Eng. Regen. Med., 5, e168, 10.1002/term.409 Goldman, 2007, Principles of CT: radiation dose and image quality, J. Nucl. Med. Technol., 35, 213, 10.2967/jnmt.106.037846 Grizzle, 1996, Theory and practice of silver staining in histopathology, J. Histotechnol., 19, 183, 10.1179/his.1996.19.3.183 Happel, 2010, Non-destructive, high-resolution 3-dimensional visualization of a cardiac defect in the chick embryo resembling complex heart defect in humans using micro-computed tomography: double outlet right ventricle with left juxtaposition of atrial appendages, Circulation, 122, e561, 10.1161/CIRCULATIONAHA.110.977884 Ho, 2006, A comparison of micro CT with other techniques used in the characterization of scaffolds, Biomaterials, 27, 1362, 10.1016/j.biomaterials.2005.08.035 Huckstorf, 2011, Comparative morphology of the hemolymph vascular system in krill (Euphausiacea; Crustacea), Arthropod Struct. Dev., 40, 39, 10.1016/j.asd.2010.07.004 Ikura, 2004, In vitro evaluation of normal and abnormal lungs with ultra-high-resolution CT, J. Thorac. Imag., 19, 8, 10.1097/00005382-200401000-00002 Jeffery, 2011, Micro-computed tomography with iodine staining resolves the arrangement of muscle fibres, J. Biomech., 44, 189, 10.1016/j.jbiomech.2010.08.027 Johnson, 2006, Virtual histology of transgenic mouse embryos for high-throughput phenotyping, PLoS Genet., 2, e61, 10.1371/journal.pgen.0020061 Kääb, 1998, Dimensional changes of articular cartilage during immersion-freezing and freeze-substitution for scanning electron microscopy, Scan. Microsc., 12, 465 Kamenz, 2009, Heavy metal: a contrasting substance for micro-tomographical visualization of scorpion book lungs, Micron, 40, 911, 10.1016/j.micron.2009.05.007 Lanzirotti, A., Sutton, S., Rivers, M., Newville, M., Tappero, R., 2010. Synchrotron X-ray fluorescence microtomography in geo-, cosmo- and biochemistry. 10th International Conference on X-ray Microscopy, Abstracts, 85. Lareida, 2009, High-resolution X-ray tomography of the human inner ear: synchrotron radiation-based study of nerve fibre bundles, membranes and ganglion cells, J. Microsc., 234, 95, 10.1111/j.1365-2818.2009.03143.x Lee, 2010, Flow tracing microparticle sensors designed for enhanced X-ray contrast, Biosens. Bioelectron., 25, 1571, 10.1016/j.bios.2009.11.010 Li, 2010, A novel functional CT contrast agent for molecular imaging of cancer, Phys. Med. Biol., 55, 4389, 10.1088/0031-9155/55/15/013 Lin, P.J.P., et al. 1993. AAPM Report No. 39: Specification and Acceptance Testing of Computed Tomography Scanners. American Institute of Physics, New York. Litzlbauer, 2006, Three-dimensional imaging and morphometric analysis of alveolar tissue from microfocal X-ray-computed tomography, Am. J. Physiol. Lung Cell. Mol. Physiol., 291, L535, 10.1152/ajplung.00088.2005 Mayhew, 2009, A review of recent methods for efficiently quantifying immunogold and other nanoparticles using TEM sections through cells, tissues and organs, Ann. Anat., 191, 153, 10.1016/j.aanat.2008.11.001 Metscher, 2009, MicroCT for comparative morphology: simple staining methods allow high-contrast 3D imaging of diverse non-mineralized animal tissues, BMC Physiol., 9, 11, 10.1186/1472-6793-9-11 Mizutani, 2009, X-ray microscopy for neural circuit reconstruction, J. Phys. Conf. Ser., 186, 012092, 10.1088/1742-6596/186/1/012092 Mizutani, 2010, Revealing human brain circuits by microtomography, SPring-8 Res. Front., 2009, 42 Mizutani, 2006, Microtomographic analysis of Drosophila brain, Biophysics (the Fifth East Asian Biophysics Symposium, the Biophysical Society of Japan), 46, S388 Mizutani, 2007, Computed tomography imaging of the neuronal structure of Drosophila brain, J. Synchrotron Radiat., 14, 282, 10.1107/S0909049507009004 Mizutani, 2008, Three-dimensional microtomographic imaging of human brain cortex, Brain Res., 1199, 53, 10.1016/j.brainres.2008.01.029 Mizutani, 2008, X-ray microtomographic imaging of three-dimensional structure of soft tissues, Tissue Eng. Part C, 14, 359, 10.1089/ten.tec.2008.0274 Mizutani, 2008, Element-specific microtomographic imaging of Drosophila brain stained with high-Z probes, J. Synchrotron Radiat., 15, 374, 10.1107/S0909049508003725 Mizutani, 2008, Evaluation of the improved three-dimensional resolution of a synchrotron radiation computed tomograph using a micro-fabricated test pattern, J. Synchrotron Radiat., 15, 648, 10.1107/S0909049508025685 Mizutani, 2009, Three-dimensional microstructural analysis of human brain tissue by using synchrotron radiation microtomographs, 247 Mizutani, 2010, Microtomographic analysis of neuronal circuits of human brain, Cereb. Cortex, 20, 1739, 10.1093/cercor/bhp237 Mizutani, 2010, Submicrometer tomographic resolution examined using a micro-fabricated test object, Micron, 41, 90, 10.1016/j.micron.2009.09.001 Mizutani, 2010, Estimation of presampling modulation transfer function in synchrotron radiation microtomography, Nucl. Instrum. Methods A, 621, 615, 10.1016/j.nima.2010.03.111 Mizutani, 2010, Unveiling 3D Biological Structures by X-ray Microtomography, 379 Mizutani, 2011, Building human brain network in 3D coefficient map determined by X-ray microtomography, AIP Conf. Proc., 1365, 403, 10.1063/1.3625388 Mokso, 2011, Following dynamic processes by X-ray tomographic microscopy with sub-second temporal resolution, AIP Conf. Proc., 1365, 38, 10.1063/1.3625299 Mondy, 2009, Micro-CT of corrosion casts for use in the computer-aided design of microvasculature, Tissue Eng. Part C, 15, 729, 10.1089/ten.tec.2008.0583 Natarajan, 2004, Recent advances in analytical modeling of lumbar disc degeneration, Spine, 29, 2733, 10.1097/01.brs.0000146471.59052.e6 Nelson, 2010, High-resolution X-ray diffraction microscopy of specifically labeled yeast cells, Proc. Natl. Acad. Sci. U. S. A., 107, 7235, 10.1073/pnas.0910874107 Neues, 2008, X-ray microcomputer tomography for the study of biomineralized endo- and exoskeletons of animals, Chem. Rev., 108, 4734, 10.1021/cr078250m Parameswaran, 2009, Three-dimensional measurement of alveolar airspace volumes in normal and emphysematous lungs using micro-CT, J. Appl. Physiol., 107, 583, 10.1152/japplphysiol.91227.2008 Salomé, 1999, A synchrotron radiation microtomography system for the analysis of trabecular bone samples, Med. Phys., 26, 2194, 10.1118/1.598736 Sasov, 2011, New lens-free X-ray source for laboratory nano-CT with 50-nm spatial resolution, AIP Conf. Proc., 1365, 140, 10.1063/1.3625324 Schulz, 2010, High-resolution tomographic imaging of a human cerebellum: comparison of absorption and grating-based phase contrast, J. R. Soc. Interface, 7, 1665, 10.1098/rsif.2010.0281 Seifert, 2002, Resolving power of 3D X-ray microtomography systems, Proc. SPIE., 4682, 407, 10.1117/12.465583 Small, 2008, Unravelling the structure of the lamellipodium, J. Microsc., 231, 479, 10.1111/j.1365-2818.2008.02060.x Stampanoni, 2010, Phase-contrast tomography at the nanoscale using hard X-rays, Phys. Rev. B, 81, 140105, 10.1103/PhysRevB.81.140105 Takeuchi, 2002, Submicrometer-resolution three-dimensional imaging with hard X-ray imaging microtomography, Rev. Sci. Instrum., 73, 4246, 10.1063/1.1515385 Tkachuk, 2007, X-ray computed tomography in Zernike phase contrast mode at 8keV with 50-nm resolution using Cu rotating anode X-ray source, Z. Kristallogr., 222, 650, 10.1524/zkri.2007.222.11.650 Toda, 2008, Direct measurement procedure for three-dimensional local crack driving force using synchrotron X-ray microtomography, Acta Mater., 56, 6027, 10.1016/j.actamat.2008.08.022 Tsuchiyama, 2005, Quantitative evaluation of attenuation contrast of X-ray computed tomography images using monochromatized beams, Am. Mineral., 90, 132, 10.2138/am.2005.1552 Tsuchiyama, 2011, Three-dimensional structure of Hayabusa samples: origin and evolution of Itokawa regolith, Science, 333, 1125, 10.1126/science.1207807 Uesugi, 2001, Development of high spatial resolution X-ray CT system at BL47XU in SPring-8, Nucl. Instrum. Methods A, 467-468, 853, 10.1016/S0168-9002(01)00491-0 Uesugi, 2011, Optimizing the illumination in a hard X-ray microscope with integrated Talbot interferometer, AIP Conf. Proc., 1365, 309, 10.1063/1.3625366 Valverde, 1970, The Golgi method, 12 van de Kamp, 2011, A biological screw in a beetle's leg, Science, 333, 52, 10.1126/science.1204245 Van Loo, D., Masschaele, B., Dierick, M., Boone, M.N., Van den Bulcke, J., Vansteenkiste, D., Van Hoorebeke, L., Van Acker, J., Jacobs, P., 2010. A flexible modular laboratory X-ray nano-CT scanner. 10th International Conference on X-ray Microscopy, Abstracts, 181. Wang, 2011, Computed tomography imaging of cancer cells using acetylated dendrimer-entrapped gold nanoparticles, Biomaterials, 32, 2979, 10.1016/j.biomaterials.2011.01.001 Watanabe, 2009, X-ray fluorescence micro-tomography and laminography using an X-ray scanning microscope, J. Phys. Conf. Ser., 186, 012022, 10.1088/1742-6596/186/1/012022 Winarski, R.P., Holt, M.V., Rose, V., De Carlo, F., Maser, J., 2010. Development of X-ray nanotomography with the hard X-ray nanoprobe. 10th International Conference on X-ray Microscopy, Abstracts, 191. Wu, 2009, Imaging renal structures by X-ray phase-contrast microtomography, Kidney Int., 75, 945, 10.1038/ki.2009.42 Yamanaka, 2010, Nuclear reprogramming to a pluripotent state by three approaches, Nature, 465, 704, 10.1038/nature09229 Young, 2008, Microcomputed tomography characterization of neovascularization in bone tissue engineering applications, Tissue Eng. Part B, 14, 295, 10.1089/ten.teb.2008.0153 Zhang, K., Li, D.-e., Huang, W., Yuan, Q., Zhu, P., Zhou, H., Gelb, J., Tkachuk, A., Yun, W., Wu, Z., 2010. 3D visualization of the microstructure of Amphizoa davidi Lucas using micro-CT. 10th International Conference on X-ray Microscopy, Abstracts, 306. Zhu, 2011, Microtomography of partially molten rocks: three-dimensional melt distribution in mantle peridotite, Science, 332, 88, 10.1126/science.1202221 Zou, 2011, Application of polychromatic μCT for mineral density determination, J. Dent. Res., 90, 18, 10.1177/0022034510378429