WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

2008, WikiPathways: pathway editing for the people, PLoS Biol., 6, e184, 10.1371/journal.pbio.0060184

2013, WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks, Rice, 6, 14, 10.1186/1939-8433-6-14

2014, The application of the open pharmacological concepts triple store (Open PHACTS) to support drug discovery research, PLoS ONE, 9, e115460, 10.1371/journal.pone.0115460

2016, The Reactome pathway Knowledgebase, Nucleic Acids Res., 44, D481, 10.1093/nar/gkv1351

2017, KEGG: new perspectives on genomes, pathways, diseases and drugs, Nucleic Acids Res., 45, D353, 10.1093/nar/gkw1092

2016, Recon 2.2: from reconstruction to model of human metabolism, Metabolomics, 12, 1

2010, Pathway Commons, a web resource for biological pathway data, Nucleic Acids Res., 39, D685

2013, The ConsensusPathDB interaction database: 2013 update, Nucleic Acids Res., 41, D793, 10.1093/nar/gks1055

2010, Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes, Drug Discov. Today, 15, 851, 10.1016/j.drudis.2010.08.002

2016, Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington’s disease peripheral blood samples, Metabolomics, 12, 137, 10.1007/s11306-016-1084-8

2017, A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury, Nat. Commun., 8, 15932, 10.1038/ncomms15932

2017, Bayesian model of signal rewiring reveals mechanisms of gene dysregulation in acquired drug resistance in breast cancer, PLoS ONE, 12, e0173331, 10.1371/journal.pone.0173331

2016, WikiPathways: capturing the full diversity of pathway knowledge, Nucleic Acids Res., 44, D488, 10.1093/nar/gkv1024

2015, PathVisio 3: an extendable pathway analysis toolbox, PLoS Comput. Biol., 11, e1004085, 10.1371/journal.pcbi.1004085

2010, The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services, BMC Bioinf., 11, 5, 10.1186/1471-2105-11-5

2016, The metabolome 18 years on: a concept comes of age, Metabolomics, 12, 148, 10.1007/s11306-016-1108-4

2013, MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data, Nucleic Acids Res., 41, D781, 10.1093/nar/gks1004

2015, Enabling Open Science: Wikidata for Research (Wiki4R), RIO, 1, e7573, 10.3897/rio.1.e7573

2016, ChEBI in 2016: Improved services and an expanding collection of metabolites, Nucleic Acids Res., 44, D1214, 10.1093/nar/gkv1031

2013, HMDB 3.0—the Human Metabolome Database in 2013, Nucleic Acids Res., 41, D801

2016, Reactome from a WikiPathways perspective, PLoS Comput. Biol., 12, e1004941, 10.1371/journal.pcbi.1004941

2011, KNApSAcK family databases: integrated metabolite–plant species databases for multifaceted plant research, Plant Cell Physiol., 53, e1

2013, Multivariate analysis of analytical chemistry data and utility of the KNApSAcK family database to understand metabolic diversity in medicinal plants, Biotechnology for Medicinal Plants, 413, 10.1007/978-3-642-29974-2_18

2009, Update of the LIPID MAPS comprehensive classification system for lipids, J. Lipid Res., 50, S9, 10.1194/jlr.R800095-JLR200

2017, Identifying known unknowns using the US EPA’s CompTox Chemistry Dashboard, Anal. Bioanal. Chem., 409, 1729, 10.1007/s00216-016-0139-z

2012, Mining and integration of pathway diagrams from imaging data, Bioinformatics, 28, 739, 10.1093/bioinformatics/bts018

2011, BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications, Nucleic Acids Res., 39, W541, 10.1093/nar/gkr469

2014, WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization [version 2; referees: 2 approved], F1000Research, 3, 152, 10.12688/f1000research.4254.2

2016, Using the semantic web for rapid integration of WikiPathways with other biological online data resources, PLoS Comput. Biol., 12, e1004989, 10.1371/journal.pcbi.1004989

2017, WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata, Database, 2017

2016, The FAIR Guiding Principles for scientific data management and stewardship, Sci. Data, 3, 160018, 10.1038/sdata.2016.18

2011, The value of data, Nat. Genet., 43, 281, 10.1038/ng0411-281

2017, Reliable granular references to Changing Linked Data, The Semantic Web ISWC 2017