Whole genome sequence data of an Antarctic bacterium, Arthrobacter sp. ES1 from the Schirmacher Oasis, East Antarctica

Data in Brief - Tập 48 - Trang 109052 - 2023
Chui Peng Teoh1, Nur Athirah Yusof1, Cahyo Budiman1, Yoke Kqueen Cheah2, Clemente Michael Vui Ling Wong1
1Biotechnology Research Institute, Universiti Malaysia Sabah, 88400 Kota Kinabalu, Sabah, Malaysia
2Department of Biomedical Science, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor Darul Ehsan, Malaysia

Tài liệu tham khảo

Cox, 2010, SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data, BMC Bioinform., 11, 485, 10.1186/1471-2105-11-485 Langmead, 2012, Fast gapped-read alignment with Bowtie 2, Nat. Method., 9, 357, 10.1038/nmeth.1923 Zerbino, 2008, Velvet: Algorithms for de novo short read assembly using de Bruijn graphs, Genome Res., 18, 821, 10.1101/gr.074492.107 Simão, 2015, BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs, Bioinformatics, 31, 3210, 10.1093/bioinformatics/btv351 Aziz, 2008, The RAST Server: Rapid Annotations using Subsystems Technology, BMC Genom., 9, 75, 10.1186/1471-2164-9-75 Mongodin, 2006, Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1, PLoS Genet., 2, e214, 10.1371/journal.pgen.0020214 Wietz, 2012, Wide distribution of closely related, antibiotic-producing Arthrobacter strains throughout the Arctic Ocean, Appl. Environ. Microbiol., 78, 2039, 10.1128/AEM.07096-11 S. Andrew, FastQC: A Quality Control Tool for High Throughput Sequence Data, https://www.bioinformatics.babraham.ac.uk/projects/fastqc/, 2010.