Whole-genome re-sequencing

Current Opinion in Genetics & Development - Tập 16 Số 6 - Trang 545-552 - 2006
David Bentley1
1Solexa Ltd, Chesterford Research Park, Little Chesterford, Near Saffron Walden, Essex, CB10 1XL, UK

Tóm tắt

Từ khóa


Tài liệu tham khảo

1997, The yeast genome directory, Nature, 387, 5

1998, Genome sequence of the nematode C. elegans: a platform for investigating biology. The C. elegans Sequencing Consortium, Science, 282, 2012, 10.1126/science.282.5396.2012

Cole, 1998, Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence, Nature, 393, 537, 10.1038/31159

2004, Finishing the euchromatic sequence of the human genome, Nature, 431, 931, 10.1038/nature03001

2001, A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms, Nature, 409, 928, 10.1038/35057149

Velculescu, 1995, Serial analysis of gene expression, Science, 270, 484, 10.1126/science.270.5235.484

Sanger, 1977, DNA sequencing with chain-terminating inhibitors, Proc Natl Acad Sci USA, 74, 5463, 10.1073/pnas.74.12.5463

Shendure, 2004, Advanced sequencing technologies: methods and goals, Nat Rev Genet, 5, 335, 10.1038/nrg1325

Paegel, 2003, Microfluidic devices for DNA sequencing: sample preparation and electrophoretic analysis, Curr Opin Biotechnol, 14, 42, 10.1016/S0958-1669(02)00004-6

Chee, 1996, Accessing genetic information with high-density DNA arrays, Science, 274, 610, 10.1126/science.274.5287.610

Patil, 2001, Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21, Science, 294, 1719, 10.1126/science.1065573

Hinds, 2005, Whole-genome patterns of common DNA variation in three human populations, Science, 307, 1072, 10.1126/science.1105436

Margulies, 2005, Genome sequencing in microfabricated high-density picolitre reactors, Nature, 437, 376, 10.1038/nature03959

Hardenbol, 2003, Multiplexed genotyping with sequence-tagged molecular inversion probes, Nat Biotechnol, 21, 673, 10.1038/nbt821

Shendure, 2005, Accurate multiplex polony sequencing of an evolved bacterial genome, Science, 309, 1728, 10.1126/science.1117389

Balasubramanian S, Bentley DR: Polynucleotide arrays and their use in sequencing. Patent WO 01/157248 2001.

Braslavsky, 2003, Sequence information can be obtained from single DNA molecules, Proc Natl Acad Sci USA, 100, 3960, 10.1073/pnas.0230489100

Winters-Hilt, 2003, Highly accurate classification of Watson-Crick basepairs on termini of single DNA molecules, Biophys J, 84, 967, 10.1016/S0006-3495(03)74913-3

Levene, 2003, Zero-mode waveguides for single-molecule analysis at high concentrations, Science, 299, 682, 10.1126/science.1079700

Ewing, 1998, Base-calling of automated sequencer traces using Phred. I. Accuracy assessment, Genome Res, 8, 175, 10.1101/gr.8.3.175

Ewing, 1998, Base-calling of automated sequencer traces using phred. II. Error probabilities, Genome Res, 8, 186, 10.1101/gr.8.3.175

Whiteford, 2005, An analysis of the feasibility of short read sequencing, Nucleic Acids Res, 33, e171, 10.1093/nar/gni170

Bonfield, 1995, A new DNA sequence assembly program, Nucleic Acids Res, 23, 4992, 10.1093/nar/23.24.4992