Whole brain transcriptomics of intermittently fed individuals of the marine teleost Sparus aurata
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics - Tập 36 - Trang 100737 - 2020
Tài liệu tham khảo
Amigo, 2017, Caloric restriction increases brain mitochondrial calcium retention capacity and protects against excitotoxicity, Aging Cell, 16, 73, 10.1111/acel.12527
Andrews, S., FastQC A Quality Control Tool for High Throughput Sequence Data.
Benedito-Palos, 2014, Wide-gene expression analysis of lipid-relevant genes in nutritionally challenged gilthead sea bream (Sparus aurata), Gene, 547, 34, 10.1016/j.gene.2014.05.073
Bertucci, 2019, Nutrient regulation of endocrine factors influencing feeding and growth in fish, Front. Endocrinol., 10, 10.3389/fendo.2019.00083
Biagioli, 2009, Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells, Proc. Natl. Acad. Sci. U. S. A., 106, 15454, 10.1073/pnas.0813216106
Davis, 2011, Effect of fasting on body composition and responses to stress in sunshine bass, Comp. Biochem. Phys. A, 158, 30, 10.1016/j.cbpa.2010.08.019
Drew, 2008, Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio), Physiol. Genomics, 35, 283, 10.1152/physiolgenomics.90213.2008
Foss, 2009, Compensatory growth in Atlantic halibut: effect of starvation and subsequent feeding on growth, maturation, feed utilization and flesh quality, Aquaculture, 290, 304, 10.1016/j.aquaculture.2009.02.021
Galicia, 2018, Expression patterns of dscam and sdk gene paralogs in developing zebrafish retina, Mol. Vis., 24, 443
Hampel, 2014, The antidepressant drug carbamazepine induces differential transcriptome expression in the brain of Atlantic salmon, Salmo salar, Aquat. Toxicol., 151, 114, 10.1016/j.aquatox.2013.12.018
Hanahisa, 1997, Increase in calcium content and Ca(2+)-ATPase activity in the brain of fasted rats: comparison with different ages, Mol. Cell. Biochem., 171, 127, 10.1023/A:1006852404215
Henry, 2001, Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis, Dev. Biol., 240, 474, 10.1006/dbio.2001.0467
Hirayama, 2013, Chapter seven - clustered protocadherins and neuronal diversity, 145, 10.1016/B978-0-12-394311-8.00007-8
Huang, 2007, The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists, Genome Biol., 8, R183, 10.1186/gb-2007-8-9-r183
Inness, 2008, The impact of dietary restriction, intermittent feeding and compensatory growth on reproductive investment and lifespan in a short-lived fish, Proc. R. Soc. B Biol. Sci., 275, 1703, 10.1098/rspb.2008.0357
Johansen, 2001, Weight gain and lipid deposition in Atlantic salmon, Salmo salar, during compensatory growth: evidence for lipostatic regulation?, Aquac. Res., 32, 963, 10.1046/j.1365-2109.2001.00632.x
Kennedy, 2017, HSPB1 facilitates ERK-mediated phosphorylation and degradation of BIM to attenuate endoplasmic reticulum stress-induced apoptosis, Cell Death Dis., 8, 10.1038/cddis.2017.408
Kim, 2015, HISAT: a fast spliced aligner with low memory requirements, Nat. Methods, 12, 357, 10.1038/nmeth.3317
Kopylova, 2012, SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data, Bioinformatics, 28, 3211, 10.1093/bioinformatics/bts611
London, 2019, Cloning and effects of fasting on the brain expression levels of appetite-regulators and reproductive hormones in glass catfish (Kryptopterus vitreolus), Comp. Biochem. Phys. A, 228, 94, 10.1016/j.cbpa.2018.11.009
Louro, 2016, Having a BLAST: searchable transcriptome resources for the gilthead sea bream and the European sea bass, Mar. Genom., 30, 67, 10.1016/j.margen.2016.10.004
Love, 2014, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol., 15, 550, 10.1186/s13059-014-0550-8
Maciel, 2018, Compensatory growth and feed restriction in marine shrimp production, with emphasis on biofloc technology, Aquacult. Int., 26, 203, 10.1007/s10499-017-0209-z
Martin, 2011, 17
Midwood, 2016, Stress and food deprivation: linking physiological state to migration success in a teleost fish, J. Exp. Biol., 219, 3712, 10.1242/jeb.140665
Nicieza, 1997, Growth compensation in juvenile Atlantic salmon: responses to depressed temperature and food availability, Ecology, 78, 2385, 10.1890/0012-9658(1997)078[2385:GCIJAS]2.0.CO;2
Pedroso, 2006, Changes in mRNA expression of grouper (Epinephelus coioides) growth hormone and insulin-like growth factor I in response to nutritional status, Gen. Comp. Endocrinol., 145, 237, 10.1016/j.ygcen.2005.09.001
Pertea, 2015, StringTie enables improved reconstruction of a transcriptome from RNA-seq reads, Nat. Biotechnol., 33, 290, 10.1038/nbt.3122
Peyric, 2013, Circadian clock regulation of the cell cycle in the zebrafish intestine, PLoS One, 8, 10.1371/journal.pone.0073209
Pfaffl, 2002, Relative expression software tool (REST (c)) for group-wise comparison and statistical analysis of relative expression results in real-time PCR, Nucleic Acids Res., 30, 10.1093/nar/30.9.e36
Pikle, 2017, Food-deprivation-induced suppression of pituitary-testicular-axis in the tilapia Oreochromis mossambicus, Int. Aquat. Res., 9, 203, 10.1007/s40071-017-0169-y
Polakof, 2006, Food deprivation alters osmoregulatory and metabolic responses to salinity acclimation in gilthead sea bream Sparus auratus, J. Comp. Physiol. B Biochem. Syst. Environ. Physiol., 176, 441, 10.1007/s00360-006-0065-z
Saha, 2014, Hemoglobin expression in nonerythroid cells: novel or ubiquitous?, Int. J. Inflamm., 2014, 10.1155/2014/803237
Salazar-Roa, 2017, Fueling the cell division cycle, Trends Cell Biol., 27, 69, 10.1016/j.tcb.2016.08.009
Salin, 2018, Decreased mitochondrial metabolic requirements in fasting animals carry an oxidative cost, Funct. Ecol., 32, 2149, 10.1111/1365-2435.13125
Schmieder, 2011, Quality control and preprocessing of metagenomic datasets, Bioinformatics, 27, 863, 10.1093/bioinformatics/btr026
Sidell, 2006, When bad things happen to good fish: the loss of hemoglobin and myoglobin expression in Antarctic icefishes, J. Exp. Biol., 209, 1791, 10.1242/jeb.02091
Smagin, 2019, Aberrant expression of collagen gene family in the brain regions of male mice with behavioral psychopathologies induced by chronic agonistic interactions, Biomed. Res. Int., 2019, 10.1155/2019/7276389
Sohn, 2013, Ion channels in the central regulation of energy and glucose homeostasis, Front. Neurosci. Switz, 7
Volkoff, 2016, The neuroendocrine regulation of food intake in fish: a review of current knowledge, Front. Neurosci., 10, 540, 10.3389/fnins.2016.00540
Wasilewska, 2019, Identification of zebrafish calcium toolkit genes and their expression in the brain, Genes-Basel, 10
Yang, 2019, Effect of fasting and subsequent refeeding on the transcriptional profiles of brain in juvenile Spinibarbus hollandi, PLoS One, 14
Yimlamai, 2005, The zebrafish down syndrome cell adhesion molecule is involved in cell movement during embryogenesis, Dev. Biol., 279, 44, 10.1016/j.ydbio.2004.12.001
