Whole Brain Segmentation

Neuron - Tập 33 Số 3 - Trang 341-355 - 2002
Bruce Fischl1, David H. Salat1, Evelina Busa1, Marilyn Albert2,3, Megan Dieterich4, Christian Haselgrove4, André van der Kouwe1, Ronald Killiany5, David N. Kennedy4, Shuna Klaveness4, Albert Montillo6, Nikos Makris4, Bruce R. Rosen1, Anders M. Dale1
1Massachusetts General Hospital, Nuclear Magnetic Resonance Center, Rm. 2328, Building 149, 13th Street, Charlestown, MA 02129 USA
2Department of Neurology, Massachusetts General Hospital, Harvard Medical School, 55 Fruit Street, VBK 901, Boston, MA 02114 USA
3Department of Psychiatry, CNY-9, Massachusetts General Hospital, Boston, MA 02114 USA
4Center for Morphometric Analysis, Neuroscience Center, MGH-East, Building 149, 13th Street, Charlestown, MA 02129 USA
5Department of Anatomy and Neurobiology, Boston University School of Medicine, 715 Albany Street, Boston, MA 02118, USA
6Computer Science Department, University of Pennsylvania, 111 Towne Building, 220 South 33rd Street, Philadelphia, PA 19104 USA

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Albert, 1996, Cognitive and neurobiologic markers of early Alzheimer disease, Proc. Natl. Acad. Sci. USA, 93, 13547, 10.1073/pnas.93.24.13547

Ashburner, 1997, Incorporating prior knowledge into image registration, Neuroimage, 6, 344, 10.1006/nimg.1997.0299

Bajcsy, 1983, A computerized system for the elastic matching of deformed radiographic images to idealized atlas images, J. Comput. Assist. Tomogr., 5, 618, 10.1097/00004728-198308000-00008

Ball, 1985, A new definition of Alzheimer's disease, Lancet, 1, 14, 10.1016/S0140-6736(85)90965-1

Ballester, 2000, Segmentation and measurement of brain structures in MRI including confidence bounds, Med. Image Anal., 4, 189, 10.1016/S1361-8415(00)00013-X

Besag, 1974, Spatial interaction and the statistical analysis of lattice systems (with discussion), J. R. Stat. Soc. [Ser B], 36, 192

Besag, 1986, On the statistical analysis of dirty pictures (with discussion), J. R. Stat. Soc. [Ser B], 48, 259

Bloch, 1946, Nuclear Induction, Phys. Rev., 70, 460, 10.1103/PhysRev.70.460

Bookstein, 1989, Principal warps, IEEE Transactions on Pattern Analysis and Machine Intelligence, 11, 567, 10.1109/34.24792

Braak, 1991, Neuropathological staging of Alzheimer-related changes, Acta Neuropathol. (Berl.), 82, 239, 10.1007/BF00308809

Breiter, 1994, Retrocallosal white matter abnormalities in patients with obsessive-compulsive disorder, Arch. Gen. Psychiatry, 51, 663, 10.1001/archpsyc.1994.03950080075010

Burt, 1983, The Laplacian pyramid as a compact image code, IEEE Transactions on Communications, 9, 532, 10.1109/TCOM.1983.1095851

Caviness, 1989, Magnetic resonance technology in human brain science, Brain Dev., 11, 1, 10.1016/S0387-7604(89)80002-6

Caviness, 1992, Quantitative magnetic resonance imaging and studies of degenerative diseases of the developing human brain, Brain Dev. Suppl., 14, S80

Caviness, 1996, The human brain age 7-11 years, Cereb. Cortex, 6, 726, 10.1093/cercor/6.5.726

Caviness, 1996, MRI-based topographic parcellation of the human neocortex, J. Cogn. Neurosci., 8, 566, 10.1162/jocn.1996.8.6.566

Cho, 1997, Establishing norms for age-related changes in proton T1 of human brain tissue in vivo, Magn. Reson. Imaging, 15, 1133, 10.1016/S0730-725X(97)00202-6

Christensen, 1996, Deformable templates using large deformation kinematics, IEEE Transactions on Image Processing, 5, 1435, 10.1109/83.536892

Collins, 1997, Animal, International Journal of Pattern Recognition and Artificial Intelligence, 11, 1271, 10.1142/S0218001497000597

Collins, 1994, Data in standardized talairach space, J. Comput. Assist. Tomogr., 18, 192, 10.1097/00004728-199403000-00005

Collins, 1995, Automatic 3D model-based neuroanatomical segmentation, Hum. Brain Mapp., 3, 190, 10.1002/hbm.460030304

Convit, 1997, Specific hippocampal volume reductions in individuals at risk for Alzheimer's disease, Neurobiol. Aging, 18, 131, 10.1016/S0197-4580(97)00001-8

Dale, 1999, Cortical surface-based analysis I, Neuroimage, 9, 179, 10.1006/nimg.1998.0395

Daly, 2000, Predicting conversion to Alzheimer disease using standardized clinical information, Arch. Neurol., 57, 675, 10.1001/archneur.57.5.675

Davatzikos, 1996, Using a deformable surface model to obtain a shape representation of the cortex, IEEE Transactions on Medical Imaging, 15, 785, 10.1109/42.544496

Dempster, 1977, Maximum likelihood from incomplete data via the EM algorithm, J. R. Stat. Soc. [Ser B], 39, 1

De Toledo-Morrell, 2000, From healthy aging to early Alzheimer's disease, Ann. N Y Acad. Sci., 911, 240, 10.1111/j.1749-6632.2000.tb06730.x

Double, 1996, Topography of brain atrophy during normal aging and Alzheimer's disease, Neurobiol. Aging, 17, 513, 10.1016/0197-4580(96)00005-X

Filipek, 1994, The young adult human brain, Cereb. Cortex, 4, 344, 10.1093/cercor/4.4.344

Fischl, 1999, High-resolution inter-subject averaging and a coordinate system for the cortical surface, Hum. Brain Mapp., 8, 272, 10.1002/(SICI)1097-0193(1999)8:4<272::AID-HBM10>3.0.CO;2-4

Forstl, 1995, Brain atrophy in normal aging and Alzheimer's disease. Volumetric discrimination and clinical correlations, Br. J. Psychiatry, 167, 739, 10.1192/bjp.167.6.739

Fox, 1984, Stereotactic method for determining anatomical localization in physiological brain images, J. Cereb. Blood Flow Metab., 4, 634, 10.1038/jcbfm.1984.91

Fox, 1994, BrainMap

Frisoni, 1996, Linear measures of atrophy in mild Alzheimer disease, Am. J. Neuroradiol., 17, 913

Gee, 1994, Finite element approach to warping of brain images

Geman, 1984, Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images, IEEE Transactions on Pattern Analysis and Machine Intelligence, 6, 721, 10.1109/TPAMI.1984.4767596

Germond, 2000, A cooperative framework for segmentation of MRI brain scans, Artif. Intell. Med., 20, 77, 10.1016/S0933-3657(00)00054-3

Ghanei, 1998, A 3D deformable surface model for segmentation of objects from volumetric data in medical images, Comput. Biol. Med., 28, 239, 10.1016/S0010-4825(98)00007-9

Goldstein, 1999, Cortical abnormalities in schizophrenia identified by structural magnetic resonance imaging, Arch. Gen. Psychiatry, 56, 537, 10.1001/archpsyc.56.6.537

Tang, 2000, MRI brain image segmentation by multi-resolution edge detection and region selection, Computerized Medical Imaging and Graphics, 24, 349, 10.1016/S0895-6111(00)00037-9

Halliday, 1998, Regional specificity of brain atrophy in Huntington's disease, Exp. Neurol., 154, 663, 10.1006/exnr.1998.6919

Held, 1997, Markov random field segmentation of brain MR images, IEEE Transactions on Medical Imaging, 16, 876, 10.1109/42.650883

Hughes, 1982, A new clinical scale for the staging of dementia, Br. J. Psychiatry, 140, 566, 10.1192/bjp.140.6.566

Jack, 1992, MR-based hippocampal volumetry in the diagnosis of Alzheimer's disease, Neurology, 42, 183, 10.1212/WNL.42.1.183

Jack, 1997, Medial temporal atrophy on MRI in normal aging and very mild Alzheimer's disease, Neurology, 49, 786, 10.1212/WNL.49.3.786

Jack, 1999, Prediction of AD with MRI-based hippocampal volume in mild cognitive impairment, Neurology, 52, 1397, 10.1212/WNL.52.7.1397

Jack, 2000, Rates of hippocampal atrophy correlate with change in clinical status in aging and AD, Neurology, 55, 484, 10.1212/WNL.55.4.484

Jackson, 1993, Detection of hippocampal pathology in intractable partial epilepsy, Neurology, 43, 1793, 10.1212/WNL.43.9.1793

Jenike, 1996, Cerebral structural abnormalities in obsessive-compulsive disorder. A quantitative morphometric magnetic resonance imaging study, Arch. Gen. Psychiatry, 53, 625, 10.1001/archpsyc.1996.01830070073011

Jernigan, 1991, Cerebral structure on MRI, Part II, Biol. Psychiatry, 29, 68, 10.1016/0006-3223(91)90211-4

Johnson, 1998, Preclinical prediction of Alzheimer's disease using SPECT, Neurology, 50, 1563, 10.1212/WNL.50.6.1563

Kapur, T., Grimson, W.E.L., Wells, W.M., and Kikinis, R. (1998). Enhanced Spatial Priors for Segmentation of Magnetic Resonance Imagery. Medical Image Computing and Computer-Assisted Intervention, Massachusetts Institute of Technology, Cambridge, MA.

Kaye, 1997, Volume loss of the hippocampus and temporal lobe in healthy elderly persons destined to develop dementia, Neurology, 48, 1297, 10.1212/WNL.48.5.1297

Kennedy, 1989, Anatomic segmentation and volumetric calculations in nuclear magnetic resonance imaging, IEEE Transactions on Medical Imaging, 8, 1, 10.1109/42.20356

Killiany, 1993, Temporal lobe regions on magnetic resonance imaging identify patients with early Alzheimer's disease, Arch. Neurol., 50, 949, 10.1001/archneur.1993.00540090052010

Killiany, 2000, The use of structural MRI to predict who will get Alzheimer's disease, Ann. Neurol., 47, 430, 10.1002/1531-8249(200004)47:4<430::AID-ANA5>3.0.CO;2-I

Laakso, 1995, Volumes of hippocampus, amygdala and frontal lobes in the MRI-based diagnosis of early Alzheimer's disease, J. Neural Transm. Park. Dis. Dement. Sect., 9, 73, 10.1007/BF02252964

Leahy, R.M., and Yan, X. (1991). Incorporation of Anatomical MR Data for Improved Functional Imaging with PET. Information Processing in Medical Imaging, 12th international conference, Wye, UK.

Lehtovirta, 1995, Volumes of hippocampus, amygdala and frontal lobe in Alzheimer patients with different apolipoprotein E genotypes, Neuroscience, 67, 65, 10.1016/0306-4522(95)00014-A

Luxenberg, 1987, Rate of ventricular enlargement in dementia of the Alzheimer type correlates with rate of neuropsychological deterioration, Neurology, 37, 1135, 10.1212/WNL.37.7.1135

MacDonald, 2000, Automated 3-D extraction of inner and outer surfaces of cerebral cortex from MRI, Neuroimage, 12, 340, 10.1006/nimg.1999.0534

Magnotta, 1999, Measurement of brain structures with artificial neural networks, Radiology, 211, 781, 10.1148/radiology.211.3.r99ma07781

Makris, 1997, Morphometry of in vivo human white matter association pathways with diffusion-weighted magnetic resonance imaging, Ann. Neurol., 42, 951, 10.1002/ana.410420617

Mazziotta, 1995, A probabilistic atlas of the human brain, Neuroimage, 2, 297, 10.1006/nimg.1995.1012

Miller, 1993, A mathematical textbook of deformable neuroanatomies, Proc. Natl. Acad. Sci. USA, 90, 11944, 10.1073/pnas.90.24.11944

Mizuno, 2000, Medial temporal atrophy and memory impairment in early stage of Alzheimer's disease, J. Neurol. Sci., 173, 18, 10.1016/S0022-510X(99)00289-0

Murphy, 1993, Volumetric magnetic resonance imaging in men with dementia of the Alzheimer type, Biol. Psychiatry, 34, 612, 10.1016/0006-3223(93)90153-5

Ogg, 1998, Age-related changes in brain T1 are correlated with iron concentration, Magn. Reson. Med., 40, 749, 10.1002/mrm.1910400516

O'Sullivan, 1997, Reduced basal ganglia volumes in trichotillomania measured via morphometric magnetic resonance imaging, Biol. Psychiatry, 42, 39, 10.1016/S0006-3223(96)00297-1

Pedersen, 1999, Neuroimaging findings in twins discordant for Alzheimer's disease, Dement. Geriatr. Cogn. Disord., 10, 51, 10.1159/000017097

Powell, 1993, Convex third ventricle, J. Geriatr. Psychiatry Neurol., 6, 217, 10.1177/089198879300600407

Press, 1994

Puri, 1999, Cerebral ventricular asymmetry in schizophrenia, Int. J. Psychophysiol., 34, 207, 10.1016/S0167-8760(99)00078-1

Rademacher, 1992, Human cerebral cortex, J. Cogn. Neurosci., 4, 352, 10.1162/jocn.1992.4.4.352

Rosen, 1984, Spin lattice relaxation time measurements in two-dimensional nuclear magnetic resonance imaging, J. Comput. Assist. Tomogr., 8, 195

Ruan, 2000, Brain tissue classification of magnetic resonance images using partial volume modeling, IEEE Transactions on Medical Imaging, 19, 1179, 10.1109/42.897810

Sandor, 1997, Surface-based labeling of cortical anatomy using a deformable atlas, IEEE Transactions on Medical Imaging, 16, 41, 10.1109/42.552054

Seidman, 1999, Thalamic and amygdala-hippocampal volume reductions in first-degree relatives of patients with schizophrenia, Biol. Psychiatry, 46, 941, 10.1016/S0006-3223(99)00075-X

Small, 2000, Evaluating the function of hippocampal subregions with high-resolution MRI in Alzheimer's disease and aging, Microsc. Res. Tech., 51, 101, 10.1002/1097-0029(20001001)51:1<101::AID-JEMT11>3.0.CO;2-H

Steen, 2000, More than meets the eye, Magn. Reson. Imaging, 18, 361, 10.1016/S0730-725X(00)00123-5

Suckling, 1999, A modified fuzzy clustering algorithm for operator independent brain tissue classification, Magn. Reson. Imaging, 17, 1065, 10.1016/S0730-725X(99)00055-7

Talairach, 1967

Talairach, 1988

Teo, 1997, Creating connected representations of cortical gray matter for functional MRI visualization, IEEE Transactions on Medical Imaging, 16, 852, 10.1109/42.650881

Thompson, 1996, High-resolution random mesh algorithms for creating a probabilistic 3D surface atlas of the human brain, Neuroimage, 3, 19, 10.1006/nimg.1996.0003

Thompson, 1997, Detection and mapping of abnormal brain structure with a probabilistic atlas of cortical surfaces, J. Comput. Assist. Tomogr., 21, 567, 10.1097/00004728-199707000-00008

Thompson, 2000, Mathematical/computational challenges in creating deformable and probabilistic atlases of the human brain, Hum. Brain Mapp., 9, 81, 10.1002/(SICI)1097-0193(200002)9:2<81::AID-HBM3>3.0.CO;2-8

Van Essen, 1997, Structural and functional analyses of human cerebral cortex using a surface-based atlas, J. Neurosci., 17, 7079, 10.1523/JNEUROSCI.17-18-07079.1997

Vannier, 1994, Modeling and data structures for registration of a brain atlas of mutimodality images

Vonsattel, 1998, Huntington disease, J. Neuropathol. Exp. Neurol., 57, 369, 10.1097/00005072-199805000-00001

Wang, 1998, Quantification and segmentation of brain tissues from MR images, IEEE Transactions on Image Processing, 7, 1165, 10.1109/83.704309

Warfield, 1996, Fast k-NN classification for multichannel image data, Pattern Recognition Letters, 17, 713, 10.1016/0167-8655(96)00036-0

Wells, 1996, Adaptive segmentation of MRI data, IEEE Transactions on Medical Imaging, 15, 429, 10.1109/42.511747

Wolf, 2001, Hippocampal volume discriminates between normal cognition; questionable and mild dementia in the elderly, Neurobiol. Aging, 22, 177, 10.1016/S0197-4580(00)00238-4

Woods, 1992, Rapid automated algorithm for aligning and reslicing PET images, J. Comput. Assist. Tomogr., 16, 620, 10.1097/00004728-199207000-00024

Woods, 1998, Automated image registration, J. Comput. Assist. Tomogr., 22, 155

Worsley, 1992, A three dimensional statistical analysis for CBF activation studies in human brain, J. Cereb. Blood Flow Metab., 12, 900, 10.1038/jcbfm.1992.127

Xu, 1999, Reconstruction of the human cerebral cortex from magnetic resonance images, IEEE Transactions on Medical Imaging, 18, 467, 10.1109/42.781013

Zeng, 1999, Segmentation and measurement of the cortex from 3-d MR images using coupled-surfaces propagation, IEEE Transactions on Medical Imaging, 18, 927, 10.1109/42.811276

Zhang, 2001, Segmentation of Brain MR Images through hidden markov random field model and the expectation maximization algorithm, IEEE Transactions on Medical Imaging, 20, 45, 10.1109/42.906424