What is the shape of the fundamental Grinnellian niche?
Tóm tắt
Từ khóa
Tài liệu tham khảo
Angilletta M (2009) Thermal adaptation. A theoretical and empirical synthesis. Oxford University Press, Oxford
Araújo MB, Guisan A (2006) Five (or so) challenges for species distribution modelling. Glob Ecol Biogeogr 33:1677–1688
Austin MP (1985) Continuum concept, ordination methods, and niche theory. Annu Rev Ecol Syst 16:39–61
Austin M (1999) A silent clash of paradigms: some inconsistencies in community ecology. Oikos 86:170–178
Bennett, J. M., P. Calosi, S. Clusella-Trullas, B. Martínez, J. Sunday, A. C. Algar, . . . I. Kühn. 2018. GlobTherm, a global database on thermal tolerances for aquatic and terrestrial organisms. Scientific Data 5:180022
Birch LC (1953) Experimental background to the study of the distribution and abundance of insects: I. the influence of temperature, moisture and food on the innate capacity for increase of three grain beetles. Ecology 34:698–711
Blonder B, Lamanna C, Violle C, Enquist BJ (2014) The n-dimensional hypervolume. Glob Ecol Biogeogr 23:595–609
Booth TH, Nix HA, Busby JR, Hutchinson MF (2014) BIOCLIM: the first species distribution modelling package, its early applications and relevance to most current MAXENT studies. Divers Distrib 20:1–9
Brewer A, Gaston KJ (2003) The geographical range structure of the holly leaf-miner. II. Demographic rates. J Anim Ecol 72:82–93
Brewer M, O’Hara R, Anderson B, Ohlemüller R (2016) Plateau: a new method for ecologically plausible climate envelopes for species distribution modelling. Methods Ecol Evol 7:1489–1502
Broennimann O, Treier UA, Muller-Schaerer H, Thuiller W, Peterson AT, Guisan A (2007) Evidence of climatic niche shift during biological invasion. Ecol Lett 10:701–709
Broennimann, O., M. C. Fitzpatrick, P. B. Pearman, B. Petitpierre, L. Pellissier, N. G. Yoccoz, . . . A. Guisan. 2012. Measuring ecological niche overlap from occurrence and spatial environmental data. Glob Ecol Biogeogr 21:481–497
Brown JH (1995) Macroecology. University of Chicago Press, Chicago
Buckley LB, Urban MC, Angilletta MJ, Crozier LG, Rissler LJ, Sears MW (2010) Can mechanism inform species’ distribution models? Ecol Lett 13:1041–1054
Carpenter G, Gillison AN, Winter J (1993) DOMAIN: a flexible modeling procedure for mapping potential distributions of animals and plants. Biodivers Conserv 2:667–680
Caswell H (2001) Matrix population models. Sinauer Associates, Inc, Sunderland
Chapman A (2005a) Principles and methods of data cleaning-primary species and species-occurrence data. Global Biodiversity Information Facility, Copenhagen
Chapman AD (2005b) Uses of primary species-occurrence data. Global Biodiversity Information Facility, Copenhagen
Chase JM, Leibold M (2003) Ecological niches: linking classical and contemporary approaches. University of Chicago Press, Chicago and London
Cohen JE (1978) Food webs and niche space. Princeton University Press, Princeton
Crozier L, Dwyer G (2006) Combining population-dynamic and ecophysiological models to predict climate-induced insect range shifts. Am Nat 167:853–866
Dallas T, Decker RR, Hastings A (2017) Species are not most abundant in the centre of their geographic range or climatic niche. Ecol Lett 20:1526–1533
Daly C, Gibson WP, Taylor GH, Johnson GL, Pasteris P (2002) A knowledge-based approach to the statistical mapping of climate. Clim Res 22:99–113
Drake JM (2015) Range bagging: a new method for ecological niche modelling from presence-only data. Interface 12:20150086
Eckhart V, Geber M, Morris W, Fabio E, Tiffin P, Moeller D (2011) The geography of demography: long-term demographic studies and species distribution models reveal a species border limited by adaptation. Am Nat 178:S26–S43
Elith J, Graham C (2009) Do they? How do they? WHY do they differ? On finding reasons for differing performances of species distribution models. Ecography 32:66–77
Elith, J., C. Graham, R. Anderson, M. Dudik, S. Ferrier, A. Guisan, . . . N. Zimmermann. 2006. Novel methods improve prediction of species’ distributions from occurrence data. Ecography 29:129–151
Farber O, Kadmon R (2003) Assessment of alternative approaches for bioclimatic modeling with special emphasis on the Mahalanobis distance. Ecol Model 160:115–130
Franklin J (2009) Mapping species distributions: spatial inference and prediction. Cambridge University Press, Cambridge
Godsoe W (2009) I can’t define the niche but I know it when I see it: a formal link between statistical theory and the ecological niche. Oikos 119:53–60
Graham C, Ferrier S, Huettman F, Moritz C, Peterson AT (2004) New developments in museum-based informatics and applications in biodiversity analysis. Trends Ecol Evol 19:497–503
Grubb PJ (1977) The maintenance of species-richness in plant communities: the importance of the regeneration niche. Biol Rev 52:107–145
Guisan, A., R. Tingley, J. B. Baumgartner, I. Naujokaitis-Lewis, P. R. Sutcliffe, A. I. T. Tulloch, . . . Y. M. Buckley. 2013. Predicting species distributions for conservation decisions. Ecol Lett 16:1424–1435
Hijmans RJ, Cameron S, Parra J, Jones PG, Jarvis A (2005) Very high resolution interpolated climate surfaces for global land areas. Int J Climatol 25:1965–1978
Hirzel AH, Hausser J, Chessel D, Perrin N (2002) Ecological-niche factor analysis: how to compute habitat-suitability maps without absence data? Ecology 83:2027–2036
Hitchcock L (1955) Studies on the parasitic stages of the cattle tick Boophilus Microplus (Acarina: Ixodidae). Aust J Zoology 3:145–155
Holt RD (2009) Bringing the Hutchinsonian niche into the 21st century: ecological and evolutionary perspectives. Proc Natl Acad Sciences USA 106:19659–19665
Holt RD, Gomulkiewicz R (1997) The evolution of species niches: a populations dynamic perspective. In: Othmer HG, Adler FR, Lewis MA, Dillon J (eds) Case studies in mathematical modelling: ecology. Physiology and Cell Biology. Prentice-Hall, Englewood Cliffs, NJ, pp 25–50
Hooper H, Connon R, Callaghan A, Fryer G, Yarwood-Buchanan S, Biggs J et al (2008) The ecological niche of Daphnia magna characterized using population growth rate. Ecology 89:1015–1022
Hutchinson GE (1978) An introduction to population ecology. Yale University Press, New Haven
Jackson ST, Overpeck JT (2000) Responses of plant populations and communities to environmental changes of the late Quaternary. Paleobiology 26(Supplement):194–220
Jiménez-Valverde A, Lobo JM, Hortal J (2008) Not as good as they seem: the importance of concept in species distribution modelling. Divers Distrib 14:885–890
Joppa, L. N., G. McInerny, R. Harper, L. Salido, K. Takeda, K. O’Hara, . . . S. Emmott. 2013. Troubling trends in scientific software use. Science 340:814–815
Lande R, Engen S, Saether B-E (2003) Stochastic population dynamics in ecology and conservation. Oxford University Press, Oxford
Leverich WJ, Levin DA (1979) Age-specific survivorship and reproduction in Phlox drummondii. Am Nat 113:881–903
Lira-Noriega A, Manthey JD (2014) Relationship of genetic diversity and niche centrality: a survey and analysis. Evolution 68:1082–1093
Maguire B (1973) Niche response structure and the analytical potentials of its relationship to the habitat. Am Nat 107:213–246
Martínez-Meyer E, Díaz-Porras D, Peterson AT, Yáñez-Arenas C (2013) Ecological niche structure and rangewide abundance patterns of species. Biol Lett 9:20120637
Materna AC, Friedman J, Bauer C, David C, Chen S, Huang IB, Gillens A, Clarke SA, Polz MF, Alm EJ (2012) Shape and evolution of the fundamental niche in marine vibrio. The ISME journal 6(12):2168–2177
McInerny GJ, Etienne RS (2012) Ditch the niche – is the niche a useful concept in ecology or species distribution modelling? J Biogeogr 39:2096–2102
Merow C, Smith MJ, Silander J (2013) A practical guide to MaxEnt for modeling species’ distributions: what it does, and why inputs and settings matter. Ecography 36:1058–1069
Merow C, Latimer AM, Wilson AM, McMahon SM, Rebelo AG, Silander JA (2014) On using integral projection models to generate demographically driven predictions of species’ distributions: development and validation using sparse data. Ecography 37:1167–1183
Nix, H. A. 1986. A biogeographic analysis of Australian elapid snakes.in R. Longmore, editor. Atlas of Elapid Snakes of Australia. Australian Government Publishing Service, Canberra
Osorio-Olvera L, Falconi M, Soberón J (2016) Sobre la relación entre idoneidad del hábitat y la abundancia poblacional bajo diferentes escenarios de dispersión. Rev Mex Biodiversidad 87:1080–1088
Owens, H. L., L. P. Campbell, L. L. Dornak, E. E. Saupe, N. Barve, J. Soberón, . . . A. T. Peterson. 2013. Constraints on interpretation of ecological niche models by limited environmental ranges on calibration areas. Ecol Model 263:10–18
Peterson AT (2003) Predicting the geography of species’ invasions via ecological niche modeling. Q Rev Biol 78:419–433
Peterson AT (2011) Ecological niche conservatism: a time-structured review of evidence. J Biogeogr 38:817–827
Peterson AT, Soberon J, Sanchez-Cordero V (1999) Conservatism of ecological niches in evolutionary time. Science 285:1265–1267
Peterson AT, Martínez-Campos C, Nakazawa Y, Martínez-Meyer E (2005) Time-specific ecological niche modeling predicts spatial dynamics of vector insects and human dengue cases. Trans R Soc Trop Med Hyg 99:647–655
Peterson AT, Soberón J, Pearson RG, Anderson R, Martínez-Meyer E, Nakamura M, Araújo M (2011) Ecological niches and geographic distributions. Princeton University Press, Princeton
Peterson AT, Papeş M, Soberón J (2015) Mechanistic and correlative models of ecological niches. European Journal of Ecology 1:28–38
Phillips SJ, Anderson RP, Schapire RE (2006) Maximum entropy modeling of species geographic distributions. Ecol Model 190:231–259
Pironon S, Villellas J, Thuiller W, Eckhart VM, Geber MA, Moeller DA, García MB (2017) The ‘Hutchinsonian niche’as an assemblage of demographic niches: implications for species geographic ranges. Ecography 41:1103–1113
Sheth SN, Angert AL (2014) The evolution of environmental tolerance and range size: a comparison of geographically restricted and widespread Mimulus. Evolution 68:2917–2931
Soberón J, Arroyo-Peña B (2017) Are fundamental niches larger than the realized? Testing a 50-year-old prediction by Hutchinson. PLoS One 12:e0175138
Soberón J, Peterson AT (2011) Ecological shifts and environmental space anisotropy: a cautionary note. Rev Mex Biodiversidad 82:1348–1355
Soberón J, Llorente J, Benítez H (1996) An international view of national biological surveys. Ann Mo Bot Gard 83:562–573
Sunday JM, Bates AE, Dulvy NK (2011) Global analysis of thermal tolerance and latitude in ectotherms. Proc R Soc Lond B Biol Sci 278:1823–1830
Sutherst RW, Maywald GF (1985) A computerized system for matching climates in. Ecol Agric, Ecosyst Environ 13:281–299
Swanson HK, Lysy M, Power M, Stasko AD, Johnson JD, Reist JD (2015) A new probabilistic method for quantifying n-dimensional ecological niches and niche overlap. Ecology 96:318–324
Tuljarpurkar S, Caswell H (1997) Structured-population models in marine, terrestrial and freshwater systems. Chapman & Hall, New York
VanDerWal J, Shoo LP, Graham C, Williams SE (2009) Selecting pseudo-absence data for presence-only distribution modeling: how far should you stray from what you know? Ecol Model 220:589–594
Ward G, Hastie T, Barry S, Elith J, Leathwick JR (2009) Presence-only data and the EM algorithm. Biometrics 65:554–563